Search of human proteins with 4757812

Search of human proteins with 4757812

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2a [Homo sapiens]
         (94 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl...   198   9e-52
gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp...   177   2e-45
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting...   121   1e-28
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,...   121   1e-28
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,...   121   1e-28
gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp...    99   1e-21
gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp...    77   2e-15
gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting...    74   3e-14
gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]    42   8e-05
gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]     38   0.002
gi|187423910 solute carrier family 7, member 9 [Homo sapiens]          28   1.6  
gi|7657591 solute carrier family 7, member 9 [Homo sapiens]            28   1.6  
gi|27477095 nuclear receptor binding SET domain protein 1 isofor...    26   7.9  
gi|19923586 nuclear receptor binding SET domain protein 1 isofor...    26   7.9  

>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2a [Homo sapiens]
          Length = 94

 Score =  198 bits (503), Expect = 9e-52
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKK 60
          MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKK
Sbjct: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKK 60

Query: 61 GSISGITMVLACYVLFSYSFSYKHLKHERLRKYH 94
          GSISGITMVLACYVLFSYSFSYKHLKHERLRKYH
Sbjct: 61 GSISGITMVLACYVLFSYSFSYKHLKHERLRKYH 94


>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2b [Homo sapiens]
          Length = 88

 Score =  177 bits (448), Expect = 2e-45
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL
Sbjct: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 64

Query: 71 ACYVLFSYSFSYKHLKHERLRKYH 94
          ACYVLFSYSFSYKHLKHERLRKYH
Sbjct: 65 ACYVLFSYSFSYKHLKHERLRKYH 88


>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  121 bits (303), Expect = 1e-28
 Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 3/84 (3%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70
          +PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+TMVL
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGLTMVL 61

Query: 71 ACYVLFSYSFSYKHLKHERLRKYH 94
          A Y+LF Y  SYK LKH+RL +YH
Sbjct: 62 AGYMLFRYCLSYKELKHKRLCRYH 85


>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  121 bits (303), Expect = 1e-28
 Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 3/84 (3%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70
          +PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+TMVL
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGLTMVL 61

Query: 71 ACYVLFSYSFSYKHLKHERLRKYH 94
          A Y+LF Y  SYK LKH+RL +YH
Sbjct: 62 AGYMLFRYCLSYKELKHKRLCRYH 85


>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  121 bits (303), Expect = 1e-28
 Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 3/84 (3%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70
          +PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+TMVL
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGLTMVL 61

Query: 71 ACYVLFSYSFSYKHLKHERLRKYH 94
          A Y+LF Y  SYK LKH+RL +YH
Sbjct: 62 AGYMLFRYCLSYKELKHKRLCRYH 85


>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2c [Homo sapiens]
          Length = 55

 Score = 98.6 bits (244), Expect = 1e-21
 Identities = 47/50 (94%), Positives = 48/50 (96%)

Query: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 50
          MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 50


>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2d [Homo sapiens]
          Length = 49

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 50
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 44


>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 79

 Score = 73.9 bits (180), Expect = 3e-14
 Identities = 37/45 (82%), Positives = 39/45 (86%), Gaps = 1/45 (2%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKY 55
          VPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQR  + +  KY
Sbjct: 35 VPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQR-EHEWLRKY 78


>gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]
          Length = 583

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 5   GECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSIS 64
           GE  + V + ++    ++  E P+ +   +FS   + GA Q+G+ R       ++K    
Sbjct: 499 GERLSQVSLLERSSTHIRSLEPPAGLTTSNFSLMRLLGAVQKGWIRCNT---TIRKSGFG 555

Query: 65  GITMVLACYVLFSYSFSYKHLKHERLRK 92
           GITM+   Y +   S+S++ LK +R RK
Sbjct: 556 GITMLFTGYFVLCCSWSFRRLKLQRWRK 583


>gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]
          Length = 609

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 5   GECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSIS 64
           GE  + V + ++    ++  E P+ +   +FS   + GA Q+G+ R       ++K    
Sbjct: 499 GERLSQVSLLERSSTHIRSLEPPAGLTTSNFSLMRLLGAVQKGWIRCNT---TIRKSGFG 555

Query: 65  GITMVLACYVLFSYSFSYKHLK 86
           GITM+   Y +   S+S++ LK
Sbjct: 556 GITMLFTGYFVLCCSWSFRRLK 577


>gi|187423910 solute carrier family 7, member 9 [Homo sapiens]
          Length = 487

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 53  NKYINVKKGSISGITMVLACYVLFSYSF 80
           N Y N+    I GI +V ACY+L + S+
Sbjct: 247 NPYRNLPLAIIIGIPLVTACYILMNVSY 274


>gi|7657591 solute carrier family 7, member 9 [Homo sapiens]
          Length = 487

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 53  NKYINVKKGSISGITMVLACYVLFSYSF 80
           N Y N+    I GI +V ACY+L + S+
Sbjct: 247 NPYRNLPLAIIIGIPLVTACYILMNVSY 274


>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
            [Homo sapiens]
          Length = 2427

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 3    SVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIF 41
            S+G+ PA +P ++KKL+     E   W L +  S +G++
Sbjct: 2333 SLGKAPASLPTEEKKLVTT---EQSPWALGKASSRAGLW 2368


>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
            [Homo sapiens]
          Length = 2696

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 3    SVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIF 41
            S+G+ PA +P ++KKL+     E   W L +  S +G++
Sbjct: 2602 SLGKAPASLPTEEKKLVTT---EQSPWALGKASSRAGLW 2637


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.141    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,756,800
Number of Sequences: 37866
Number of extensions: 145351
Number of successful extensions: 405
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 17
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.