Guide to the Human Genome
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Name: MAN2C1 Sequence: fasta or formatted (1040aa) NCBI GI: 46852164
Description:

mannosidase, alpha, class 2C, member 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         86           5
 C cysteine            2.0         21           1
 D aspartate           4.2         44           2
 E glutamate           6.0         62           2
 F phenylalanine       5.0         52           2
 G glycine             7.7         80           4
 H histidine           3.7         38           2
 I isoleucine          2.2         23           2
 K lysine              2.8         29           2
 L leucine            12.5        130           4
 M methionine          1.8         19           1
 N asparagine          2.5         26           2
 P proline             6.3         66           3
 Q glutamine           5.3         55           2
 R arginine            5.7         59           2
 S serine              6.8         71           2
 T threonine           5.1         53           2
 V valine              7.3         76           2
 W tryptophan          2.7         28           2
 Y tyrosine            2.1         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mannosidase, alpha, class 2C, member 1 
MAN2A1                0.010   mannosidase, alpha, class 2A, member 1 
MAN2A2                0.009   mannosidase, alpha, class 2A, member 2 
MAN2B2                0.009   mannosidase, alpha, class 2B, member 2 
JUND                  0.005   jun D proto-oncogene 
RXRA                  0.005   retinoid X receptor, alpha 
KIF19                 0.004   kinesin family member 19 
PHF21A                0.003   BRAF35/HDAC2 complex isoform b 
PHF21A                0.003   BRAF35/HDAC2 complex isoform a 
CABLES1               0.003   Cdk5 and Abl enzyme substrate 1 isoform 2 
ZMYM3                 0.003   zinc finger protein 261 
ZMYM3                 0.003   zinc finger protein 261 
NUP155                0.003   nucleoporin 155kDa isoform 2 
NUP155                0.003   nucleoporin 155kDa isoform 1 
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.002   SWI/SNF-related matrix-associated actin-dependent re...
LOC100293952          0.002   PREDICTED: hypothetical protein 
LOC100291385          0.002   PREDICTED: hypothetical protein XP_002347391 
LOC100287839          0.002   PREDICTED: hypothetical protein XP_002343254 
PIK3CD                0.002   catalytic phosphatidylinositol 3-kinase delta [Homo...
LATS2                 0.002   LATS, large tumor suppressor, homolog 2 
SETD1B                0.002   SET domain containing 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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