Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NFATC2IP Sequence: fasta or formatted (419aa) NCBI GI: 46447823
Description:

nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein

Referenced in:

T cells
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         20           2
 C cysteine            0.7          3           1
 D aspartate           6.2         26           2
 E glutamate           9.1         38           3
 F phenylalanine       1.4          6           3
 G glycine             9.1         38           2
 H histidine           1.4          6           1
 I isoleucine          1.7          7           2
 K lysine              5.5         23           3
 L leucine            12.2         51           3
 M methionine          1.4          6           1
 N asparagine          1.0          4           1
 P proline             9.5         40           2
 Q glutamine           3.1         13           2
 R arginine            9.1         38           5
 S serine             10.0         42           2
 T threonine           5.3         22           1
 V valine              6.7         28           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of activated T-cells, cytoplasmic, ca... 
SUMO2                 0.034   SMT3 suppressor of mif two 3 homolog 2 isoform a pre...
SUMO4                 0.034   SMT3 suppressor of mif two 3 homolog 4 
SUMO3                 0.030   small ubiquitin-like modifier protein 3 
SOS1                  0.023   son of sevenless homolog 1 
SUMO1                 0.021   SMT3 suppressor of mif two 3 homolog 1 isoform a pre...
SUMO1                 0.021   SMT3 suppressor of mif two 3 homolog 1 isoform a prec...
LOC100290946          0.021   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.021   PREDICTED: hypothetical protein XP_002344246 
CHD4                  0.020   chromodomain helicase DNA binding protein 4 
NCL                   0.018   nucleolin 
SUMO1                 0.017   SMT3 suppressor of mif two 3 homolog 1 isoform b pre...
MLL2                  0.017   myeloid/lymphoid or mixed-lineage leukemia 2 
BRWD3                 0.016   bromodomain and WD repeat domain containing 3 [Homo...
LOC100129053          0.015   PREDICTED: hypothetical protein 
LOC100129053          0.015   PREDICTED: hypothetical protein 
LOC100129053          0.015   PREDICTED: hypothetical protein 
PCNXL3                0.015   pecanex-like 3 
FAM98B                0.015   family with sequence similarity 98, member B isofor...
CAST                  0.015   calpastatin isoform l 
CAST                  0.015   calpastatin isoform k 
CAST                  0.015   calpastatin isoform j 
CAST                  0.015   calpastatin isoform i 
CAST                  0.015   calpastatin isoform h 
CAST                  0.015   calpastatin isoform g 
CAST                  0.015   calpastatin isoform f 
CAST                  0.015   calpastatin isoform e 
CAST                  0.015   calpastatin isoform c 
CAST                  0.015   calpastatin isoform b 
CAST                  0.015   calpastatin isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press