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Search of human proteins with 46358066
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46358066 hypothetical protein LOC388325 [Homo sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46358066 hypothetical protein LOC388325 [Homo sapiens] 304 1e-83
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 40 7e-04
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 35 0.022
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 34 0.049
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 34 0.049
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 34 0.049
gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens] 32 0.14
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi... 32 0.19
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens] 32 0.25
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 32 0.25
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 31 0.32
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 31 0.42
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 31 0.42
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 31 0.42
gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens] 31 0.42
gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens] 31 0.42
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 30 0.55
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 30 0.55
gi|4505683 platelet-derived growth factor receptor beta precurso... 30 0.71
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 30 0.71
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 30 0.71
gi|46048439 N-acetyltransferase 6 [Homo sapiens] 30 0.71
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 30 0.71
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 30 0.71
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 30 0.93
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 0.93
gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] 30 0.93
gi|236459851 ubinuclein 2 [Homo sapiens] 29 1.2
gi|169204626 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239750266 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
>gi|46358066 hypothetical protein LOC388325 [Homo sapiens]
Length = 145
Score = 304 bits (779), Expect = 1e-83
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MDTFTVQDSTAMSWWRNNFWIILAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKH 60
MDTFTVQDSTAMSWWRNNFWIILAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKH
Sbjct: 1 MDTFTVQDSTAMSWWRNNFWIILAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKH 60
Query: 61 KQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVS 120
KQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVS
Sbjct: 61 KQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVS 120
Query: 121 IPSYIEPEDDYDDVEIPANTEKASF 145
IPSYIEPEDDYDDVEIPANTEKASF
Sbjct: 121 IPSYIEPEDDYDDVEIPANTEKASF 145
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 40.0 bits (92), Expect = 7e-04
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 15 WRNNFWIILAVAIIVVSVGLGLI-LYCVCKWQLRRGK-KWEIAKPLKHKQVDEEKMYENV 72
W + + VA+ V +G+ ++ L C+ +W+ R+G+ + + P + + E+ YEN+
Sbjct: 190 WHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQNTEEPYENI 249
Query: 73 LNESPVQLPPLPPRN----WPSL---EDSSPQEAPSQPP 104
NE P L P++ + SL +SP+ PS P
Sbjct: 250 RNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRP 288
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 35.0 bits (79), Expect = 0.022
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 70 ENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPED 129
+N + +SP PP PP + P +DS P P PP Y + ++ Y +P
Sbjct: 330 QNSIADSPTPPPPPPPDDIPMFDDSPP--PPPPPPVDY-------EDEEAAVVQYNDPYA 380
Query: 130 DYDDVEIPAN 139
D D P N
Sbjct: 381 DGDPAWAPKN 390
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 33.9 bits (76), Expect = 0.049
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 67 KMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIE 126
++ EN+ +SP PP PP + P +DS P P PP Y + ++ Y +
Sbjct: 352 RVQENIA-DSPTPPPPPPPDDIPMFDDSPP--PPPPPPVDY-------EDEEAAVVQYND 401
Query: 127 PEDDYDDVEIPAN 139
P D D P N
Sbjct: 402 PYADGDPAWAPKN 414
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 33.9 bits (76), Expect = 0.049
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 67 KMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIE 126
++ EN+ +SP PP PP + P +DS P P PP Y + ++ Y +
Sbjct: 357 RVQENIA-DSPTPPPPPPPDDIPMFDDSPP--PPPPPPVDY-------EDEEAAVVQYND 406
Query: 127 PEDDYDDVEIPAN 139
P D D P N
Sbjct: 407 PYADGDPAWAPKN 419
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 33.9 bits (76), Expect = 0.049
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 67 KMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIE 126
++ EN+ +SP PP PP + P +DS P P PP Y + ++ Y +
Sbjct: 384 RVQENIA-DSPTPPPPPPPDDIPMFDDSPP--PPPPPPVDY-------EDEEAAVVQYND 433
Query: 127 PEDDYDDVEIPAN 139
P D D P N
Sbjct: 434 PYADGDPAWAPKN 446
>gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens]
Length = 365
Score = 32.3 bits (72), Expect = 0.14
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 19 FWIILAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKHKQVDEE-KMYENVLNESP 77
FW L + +I+ ++ LG L C C W+ +R +K P + + E+ K + N
Sbjct: 222 FWPFLVIIVILSALFLGT-LACFCVWRRKRKEKQSETSPKEFLTIYEDVKDLKTRRNHEQ 280
Query: 78 VQLPPLPPRNWPSLEDSSPQEAPSQPPA--TYSLV---NKVKNKKTVSIPSY 124
Q P S+ S SQ PA YSL+ K ++K PS+
Sbjct: 281 EQTFPGGGSTIYSMIQSQSSAPTSQEPAYTLYSLIQPSRKSGSRKRNHSPSF 332
>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo
sapiens]
Length = 1157
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 47 RRGKKWEIAKPLKHKQVDEEKMYE--NVLNESPVQLP----------PLPPRNWPSLEDS 94
R+ ++W A+ + ++ + E E + L+E P P PLPP PS +
Sbjct: 151 RKRRRWPSAEEEEEEEEESESELEEESELDEDPAAEPAEAGVGTTVAPLPPAPAPSSQPV 210
Query: 95 SPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDDYDDVEIPANTEK 142
PPA + + K V IP PE + +++P +E+
Sbjct: 211 PAGMTVPPPPAAAPPLPRALAKPAVFIPVNRSPEMQEERLKLPILSEE 258
>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
Length = 4588
Score = 31.6 bits (70), Expect = 0.25
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 23 LAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKH---------KQVDEEKMYENVL 73
+ + + V + L ++++ +C+ + R KK + KH + + K+ +N+
Sbjct: 4183 IGIVVFVAGIFLLVVVFVLCRKMISRKKKHQAEPKDKHLGPATAFLQRPYFDSKLNKNIY 4242
Query: 74 NESPVQLPPLPPRNWPSLEDSS 95
++ P Q+P P PS+ S
Sbjct: 4243 SDIPPQVPVRPISYTPSIPSDS 4264
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 31.6 bits (70), Expect = 0.25
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 31/124 (25%)
Query: 21 IILAVAIIVVSVGLGLILYCVCKWQLRRGKKWEIAKPLKHKQVDEEKMYENVLNESPVQL 80
I+ + A ++ + L LIL C RGKK + K K + ++K ENV + P +
Sbjct: 4508 IVGSCATVLALLVLSLILCNQC-----RGKKAKNPKEEKKPKEKKKKGSENVAFDDPDNI 4562
Query: 81 PPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDD---YDDVEIP 137
PP +D + ++ P P P IE E+ YD+ +IP
Sbjct: 4563 PPYG-------DDMTVRKQPEGNPK----------------PDIIERENPYLIYDETDIP 4599
Query: 138 ANTE 141
N+E
Sbjct: 4600 HNSE 4603
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 31.2 bits (69), Expect = 0.32
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 46 LRRGKKWEIAKPLKHKQVDEEKMYEN-----VLNESPVQL---PPLPPRNWPSLEDSSPQ 97
+R+ K E + K V++ E+ V + P++ P + + PS E+ SP
Sbjct: 557 VRKESKEETPEVTKVNHVEKPPKVESKEKVMVKKDKPIKTETKPSVTEKEVPSKEEPSPV 616
Query: 98 EAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDDYDDVEIP 137
+A + K +KTV + ++PED ++ E P
Sbjct: 617 KAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKP 656
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 30.8 bits (68), Expect = 0.42
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 81 PPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDDYDDVEIP 137
P LPP+ P + +P AP P T+ VN+ K P+ +EPE + + + P
Sbjct: 422 PQLPPQ--PQTQPQTPTPAPQHPQQTWPPVNEGPPKP----PTELEPEPEIEGLLTP 472
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 30.8 bits (68), Expect = 0.42
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 81 PPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDDYDDVEIP 137
P LPP+ P + +P AP P T+ VN+ K P+ +EPE + + + P
Sbjct: 422 PQLPPQ--PQTQPQTPTPAPQHPQQTWPPVNEGPPKP----PTELEPEPEIEGLLTP 472
>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
1 isoform c [Homo sapiens]
Length = 1450
Score = 30.8 bits (68), Expect = 0.42
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 77 PVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYI 125
P ++PP P R +P +DS E P + P + +V KK PS +
Sbjct: 212 PPEIPPKPVRLFPEFDDSDYDEVPEEGPGAPA---RVMTKKEEPPPSRV 257
>gi|50897850 KIAA1914 protein isoform 1 [Homo sapiens]
Length = 818
Score = 30.8 bits (68), Expect = 0.42
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 59 KHKQVDEEKMYENVLN-------ESPVQLPP---LPPRNWPSLEDSSPQEA-PSQPPATY 107
K DEE +Y N + ES + P L P PS S+PQ++ P PP
Sbjct: 46 KSSSSDEEYIYMNKVTINKQQNAESQGKAPEEQGLLPNGEPSQHSSAPQKSLPDLPPP-- 103
Query: 108 SLVNKVKNKKTVSIPSYIEPEDDYDDVE 135
+ +K ++IP PE Y++ E
Sbjct: 104 ---KMIPERKQLAIPKTESPEGYYEEAE 128
>gi|24308338 KIAA1914 protein isoform 2 [Homo sapiens]
Length = 814
Score = 30.8 bits (68), Expect = 0.42
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 59 KHKQVDEEKMYENVLN-------ESPVQLPP---LPPRNWPSLEDSSPQEA-PSQPPATY 107
K DEE +Y N + ES + P L P PS S+PQ++ P PP
Sbjct: 46 KSSSSDEEYIYMNKVTINKQQNAESQGKAPEEQGLLPNGEPSQHSSAPQKSLPDLPPP-- 103
Query: 108 SLVNKVKNKKTVSIPSYIEPEDDYDDVE 135
+ +K ++IP PE Y++ E
Sbjct: 104 ---KMIPERKQLAIPKTESPEGYYEEAE 128
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 73 LNESPVQLPPLPPRNWPSLEDS--SPQEAPSQPPATYSLVNKVKNKKTVSIP 122
L SP PP+PP P LE S S ++PPA + + KV T P
Sbjct: 971 LAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKP 1022
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 73 LNESPVQLPPLPPRNWPSLEDS--SPQEAPSQPPATYSLVNKVKNKKTVSIP 122
L SP PP+PP P LE S S ++PPA + + KV T P
Sbjct: 1053 LAPSPAMQPPVPPCPGPGLESSAASRWNGETEPPAAPAALLKVPGAGTAPKP 1104
>gi|4505683 platelet-derived growth factor receptor beta precursor
[Homo sapiens]
Length = 1106
Score = 30.0 bits (66), Expect = 0.71
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 82 PLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEPEDD 130
PLP P + D P E P S +N+V T+S S +EP+D+
Sbjct: 1024 PLPDPK-PEVADEGPLEG--SPSLASSTLNEVNTSSTISCDSPLEPQDE 1069
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 30.0 bits (66), Expect = 0.71
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 58 LKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKK 117
L KQVD E M++NV P + + S +E P PA S + +
Sbjct: 426 LSRKQVDSEHMHQNV----PTEEQRTNKSTGGEHKKSDRKEEPQYEPANTS---EDLDMD 478
Query: 118 TVSIPSYIEPEDDYDDVE 135
VS+PS + PED ++++E
Sbjct: 479 IVSVPSSV-PEDIFENLE 495
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 30.0 bits (66), Expect = 0.71
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 58 LKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNKK 117
L KQVD E M++NV P + + S +E P PA S + +
Sbjct: 464 LSRKQVDSEHMHQNV----PTEEQRTNKSTGGEHKKSDRKEEPQYEPANTS---EDLDMD 516
Query: 118 TVSIPSYIEPEDDYDDVE 135
VS+PS + PED ++++E
Sbjct: 517 IVSVPSSV-PEDIFENLE 533
>gi|46048439 N-acetyltransferase 6 [Homo sapiens]
Length = 308
Score = 30.0 bits (66), Expect = 0.71
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 52 WEIAKPLKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPP 104
+++ +P++ ++ +LN P P PPR P+L + P PP
Sbjct: 210 YQLGEPVQGLVFTSRRLPATLLNAFPTAPSPRPPRKAPNLTAQAAPRGPKGPP 262
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 30.0 bits (66), Expect = 0.71
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 80 LPPLPPRNWPSLEDSSPQEAPSQPP 104
+PPLPP P++ P+E P PP
Sbjct: 1146 VPPLPPEEPPTMPPLPPEEPPMTPP 1170
Score = 29.6 bits (65), Expect = 0.93
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 75 ESPVQLPPLPPRNWPSLEDSSPQEAPSQP--PATYSLVNKVKNKKTVSIPSYIEPEDDYD 132
E P +PPLPP P P+E P P P S + +N +PS E+
Sbjct: 1152 EEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALT-AENTWPTEVPS-SPSEESVS 1209
Query: 133 DVEIPANTEKAS 144
E P + + S
Sbjct: 1210 QPEPPVSQSEIS 1221
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 30.0 bits (66), Expect = 0.71
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 80 LPPLPPRNWPSLEDSSPQEAPSQPP 104
+PPLPP P++ P+E P PP
Sbjct: 1146 VPPLPPEEPPTMPPLPPEEPPMTPP 1170
Score = 29.6 bits (65), Expect = 0.93
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 75 ESPVQLPPLPPRNWPSLEDSSPQEAPSQP--PATYSLVNKVKNKKTVSIPSYIEPEDDYD 132
E P +PPLPP P P+E P P P S + +N +PS E+
Sbjct: 1152 EEPPTMPPLPPEEPPMTPPLPPEEPPEGPALPTEQSALT-AENTWPTEVPS-SPSEESVS 1209
Query: 133 DVEIPANTEKAS 144
E P + + S
Sbjct: 1210 QPEPPVSQSEIS 1221
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 29.6 bits (65), Expect = 0.93
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 58 LKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPPATYSLVNKVKNK- 116
L E +EN +NE LP P PS P S+ P YS+ + +
Sbjct: 1854 LSRCSTSETSGFENQVNEQSAPLPVPVPVPVPSYGGEEPVRKESKTPPPYSVYERTLRRP 1913
Query: 117 ----KTVSIPSYIEP 127
++SIP EP
Sbjct: 1914 VPLPHSLSIPVTSEP 1928
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 29.6 bits (65), Expect = 0.93
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 75 ESPVQLPPLPPRNWPSLEDS----SPQEAPSQPPATYSLVNKVKNKKTVSIPSYIEP 127
ESP+ PP R +P E+S P+E+P PP S ++ +S P P
Sbjct: 587 ESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESP 643
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 55 AKPLKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPP 104
AKPL V E E LNE LP PP P P+E+P+ PP
Sbjct: 416 AKPLGKAGVQLEPQLEAPLNEEMPLLP--PPEESPL--SPPPEESPTSPP 461
Score = 28.5 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 75 ESPVQLPPLPPRNWPSLEDS----SPQEAPSQPPATYSLVN 111
ESP PP R P EDS P+++P+ PP SL++
Sbjct: 677 ESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMS 717
Score = 26.6 bits (57), Expect = 7.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 15/56 (26%)
Query: 76 SPVQLPPLPPRNWPSLEDS-SPQEAP---SQPPATYSLVNKVKNKKTVSIPSYIEP 127
SP+ + PLPP+ P L+ S PQ +P PPA +S+PS + P
Sbjct: 1013 SPILMEPLPPQCSPLLQHSLVPQNSPPSQCSPPAL-----------PLSVPSPLSP 1057
>gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens]
Length = 643
Score = 29.6 bits (65), Expect = 0.93
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 55 AKPLKHKQVDEEKMYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPP 104
A P + K ++E M + P P +PP+ P + P ++P Q P
Sbjct: 366 ASPQQKKGGEDEDMPAAGMPPLPQSPPEIPPQGPPKISPQGPPQSPPQSP 415
>gi|236459851 ubinuclein 2 [Homo sapiens]
Length = 1347
Score = 29.3 bits (64), Expect = 1.2
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 56 KPLKHKQVDEEK-----MYENVLNESPVQLPPLPPRNWPSLEDSSPQEAPSQPP-ATYSL 109
KPL ++V + E E P PPLP + P E +S E P +PP T L
Sbjct: 70 KPLPQREVSRAEPPMSLQREPPRPEPPPPFPPLPLQPPPPRESASRAEQPPRPPRETVRL 129
Query: 110 VNKVKNKKTVSIPSYIEPE 128
+K+ S + PE
Sbjct: 130 ELVLKDPTDESCVEFSYPE 148
>gi|169204626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 62 QVDEEKMYENVLNESPVQLPPLPPRNWPSLED-----SSPQEAPSQPPATYSL 109
Q + +K +E VL + P P +W S E+ SSPQ + P+T L
Sbjct: 50 QTNTKKYFEEVLRKMTAACVPTPGSHWSSSEEVDAFISSPQIISPRTPSTSHL 102
>gi|239750266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 1.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 62 QVDEEKMYENVLNESPVQLPPLPPRNWPSLED-----SSPQEAPSQPPATYSL 109
Q + +K +E VL + P P +W S E+ SSPQ + P+T L
Sbjct: 50 QTNTKKYFEEVLRKMTAACVPTPGSHWSSSEEVDAFISSPQIISPRTPSTSHL 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,639,580
Number of Sequences: 37866
Number of extensions: 340743
Number of successful extensions: 2006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 225
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.