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Search of human proteins with 46094070
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46094070 hypothetical protein LOC80097 [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46094070 hypothetical protein LOC80097 [Homo sapiens] 307 3e-84
gi|145976946 hypothetical protein LOC653784 [Homo sapiens] 297 2e-81
gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens] 137 3e-33
gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens] 137 3e-33
gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens] 137 3e-33
gi|221139926 NHS-like 1 [Homo sapiens] 37 0.007
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 36 0.016
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 35 0.035
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 35 0.035
gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo s... 34 0.059
gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo sa... 34 0.059
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 32 0.23
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 32 0.23
gi|8567388 period 3 [Homo sapiens] 32 0.29
gi|28269693 xylosyltransferase I [Homo sapiens] 32 0.29
gi|189491742 ataxin 7 isoform b [Homo sapiens] 32 0.29
gi|4506797 ataxin 7 isoform a [Homo sapiens] 32 0.29
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 31 0.38
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 31 0.38
gi|19924099 synapsin I isoform Ia [Homo sapiens] 31 0.38
gi|19924097 synapsin I isoform Ib [Homo sapiens] 31 0.38
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 31 0.38
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 31 0.50
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 31 0.50
gi|113412653 PREDICTED: hypothetical protein [Homo sapiens] 31 0.50
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 31 0.50
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 0.50
gi|120953251 neuron navigator 3 [Homo sapiens] 31 0.50
gi|71040090 regulatory factor X, 5 [Homo sapiens] 30 0.66
gi|4557843 regulatory factor X, 5 [Homo sapiens] 30 0.66
>gi|46094070 hypothetical protein LOC80097 [Homo sapiens]
Length = 158
Score = 307 bits (786), Expect = 3e-84
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILV 60
MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILV
Sbjct: 1 MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILV 60
Query: 61 DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALA 120
DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALA
Sbjct: 61 DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALA 120
Query: 121 LAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRGST 158
LAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRGST
Sbjct: 121 LAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRGST 158
>gi|145976946 hypothetical protein LOC653784 [Homo sapiens]
Length = 158
Score = 297 bits (761), Expect = 2e-81
Identities = 152/158 (96%), Positives = 155/158 (98%)
Query: 1 MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILV 60
MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGG IDPDVFKILV
Sbjct: 1 MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGGIDPDVFKILV 60
Query: 61 DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALA 120
DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGR+KGSAALGG LA
Sbjct: 61 DLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRDKGSAALGGVLA 120
Query: 121 LAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRGST 158
LAERS+ EGSSQRMPRQPSATRLPKGGGPGKSPT+GST
Sbjct: 121 LAERSNHEGSSQRMPRQPSATRLPKGGGPGKSPTQGST 158
>gi|239757633 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 137 bits (346), Expect = 3e-33
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALA 122
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPET GRNK S +LG AL
Sbjct: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPETTGRNKDSTSLGRVPALL 101
Query: 123 ERSSREGSSQRMPRQPSATRLPKGGGPG-KSPTRGST 158
E S R+GSSQR PRQPSATRLPK GGPG + RGST
Sbjct: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
>gi|239752135 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 137 bits (346), Expect = 3e-33
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALA 122
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPE RGRNK S +LG AL
Sbjct: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALL 101
Query: 123 ERSSREGSSQRMPRQPSATRLPKGGGPG-KSPTRGST 158
E S R+GSSQR PRQPSATRLPK GGPG + RGST
Sbjct: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
>gi|113429379 PREDICTED: similar to hCG1647452 [Homo sapiens]
Length = 138
Score = 137 bits (346), Expect = 3e-33
Identities = 73/97 (75%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
Query: 63 LKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALA 122
+KLNVAP+AVFQMLKSMCAGQR+ASEPQD AAVSL T+SVPE RGRNK S +LG AL
Sbjct: 42 VKLNVAPVAVFQMLKSMCAGQRMASEPQDSAAVSLHTTSVPERRGRNKDSTSLGRVPALL 101
Query: 123 ERSSREGSSQRMPRQPSATRLPKGGGPG-KSPTRGST 158
E S R+GSSQR PRQPSATRLPK GGPG + RGST
Sbjct: 102 ECSGRKGSSQRTPRQPSATRLPKWGGPGRRQQVRGST 138
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 37.0 bits (84), Expect = 0.007
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 11 GSAAPPGLEAARQKLALRRKKVLSTEEMELYEL--AQAAGGAIDPDVFKILVDLLKLNVA 68
GS PP + +++ + +++TE +++ +L + GA + + + VA
Sbjct: 1049 GSLRPP---STKEETSRPPMPLITTEALQMVQLRPVRKNSGAEAAQLSERTAQEQRTPVA 1105
Query: 69 P---LAVFQMLKSMCAGQRLASEPQDPAAV--SLPTSSVPETRGRNKGSAALGGALALAE 123
P L LKS + + SE Q PA+V SLPT + ++G + +A GG ++ +
Sbjct: 1106 PQYHLKPSAFLKSRNSTNEMESESQ-PASVTSSLPTPAKSSSQGDHGSAAERGGPVSRSP 1164
Query: 124 RSSREGSSQRMPRQPSATRLPKGGGPGKSP 153
+ G ++ P PS T LP K P
Sbjct: 1165 GAPSAGEAEARP-SPSTTPLPDSSPSRKPP 1193
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 35.8 bits (81), Expect = 0.016
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 31/175 (17%)
Query: 8 PGPGSAA----PPGLEAARQKLALRRKKVLSTEEMELYELAQAAG-----------GAID 52
PG G +A P L+ + + +AL R + E++LY + Q A G D
Sbjct: 13 PGGGDSARRTLQPRLKPSARAMALPR----TLGELQLYRVLQRANLLSYYETFIQQGGDD 68
Query: 53 --------PDVFKILVDLLKLNVAPLAVFQMLKSM---CAGQRLASEPQDPAAVS-LPTS 100
+ F ++ L+ + PL V ++ K++ L S+P VS +P
Sbjct: 69 VQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPVSSIPLF 128
Query: 101 SVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTR 155
+ ET G KGS + G + S S + P + P GGPG R
Sbjct: 129 KISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAGDPR 183
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 34.7 bits (78), Expect = 0.035
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 10 PGSAA-PPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLLKLNVA 68
PGS+ PP L ++ K + S + ++ QA G P + I+ D K++
Sbjct: 798 PGSSPLPPRLSSSPGKTMPTTQSFASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSST 857
Query: 69 PLAVF----QMLKSMCAGQRLASEPQDPAAV---------SLPTSSVPETRGRNKGSAAL 115
+ L+ R A P++P + S P + P R AAL
Sbjct: 858 HYYLLPERPSYLERYQRFLREAQSPEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAAL 917
Query: 116 GGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRG 156
+ +S G+ PR + RLP+ G PG P G
Sbjct: 918 DPKANFSTNNSNPGARPPPPR--ATARLPQRGCPGDGPEAG 956
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sapiens]
Length = 1086
Score = 34.7 bits (78), Expect = 0.035
Identities = 39/161 (24%), Positives = 61/161 (37%), Gaps = 16/161 (9%)
Query: 10 PGSAA-PPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLLKLNVA 68
PGS+ PP L ++ K + S + ++ QA G P + I+ D K++
Sbjct: 876 PGSSPLPPRLSSSPGKTMPTTQSFASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSST 935
Query: 69 PLAVF----QMLKSMCAGQRLASEPQDPAAV---------SLPTSSVPETRGRNKGSAAL 115
+ L+ R A P++P + S P + P R AAL
Sbjct: 936 HYYLLPERPSYLERYQRFLREAQSPEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAAL 995
Query: 116 GGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRG 156
+ +S G+ PR + RLP+ G PG P G
Sbjct: 996 DPKANFSTNNSNPGARPPPPR--ATARLPQRGCPGDGPEAG 1034
>gi|14589876 embryonal Fyn-associated substrate isoform 2 [Homo
sapiens]
Length = 468
Score = 33.9 bits (76), Expect = 0.059
Identities = 49/160 (30%), Positives = 60/160 (37%), Gaps = 33/160 (20%)
Query: 5 GVGPGPGS-AAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLL 63
G PGP AAP L+ A L L + EE+ LA GG D ++ +
Sbjct: 116 GREPGPPIYAAPSNLKRASALLNLYE----APEEL----LADGEGGGTDEGIYDV----- 162
Query: 64 KLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGG----AL 119
PL + S LAS QD A L S P R R + +L AL
Sbjct: 163 -----PLLGPEAPPSPEPPGALASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPAL 217
Query: 120 ALAERSS----------REGSSQRMPRQPSATRLPKGGGP 149
+ E S R+GS Q P P RLP GGP
Sbjct: 218 PVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGGP 257
>gi|5031681 embryonal Fyn-associated substrate isoform 1 [Homo
sapiens]
Length = 561
Score = 33.9 bits (76), Expect = 0.059
Identities = 49/160 (30%), Positives = 60/160 (37%), Gaps = 33/160 (20%)
Query: 5 GVGPGPGS-AAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLL 63
G PGP AAP L+ A L L + EE+ LA GG D ++ +
Sbjct: 209 GREPGPPIYAAPSNLKRASALLNLYE----APEEL----LADGEGGGTDEGIYDV----- 255
Query: 64 KLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGG----AL 119
PL + S LAS QD A L S P R R + +L AL
Sbjct: 256 -----PLLGPEAPPSPEPPGALASHDQDTLAQLLARSPPPPHRPRLPSAESLSRRPLPAL 310
Query: 120 ALAERSS----------REGSSQRMPRQPSATRLPKGGGP 149
+ E S R+GS Q P P RLP GGP
Sbjct: 311 PVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLPGYGGP 350
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 92 PAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSSQRMP--RQPSATRLPKGGGP 149
P AV++P SS+P++ N G ++G +A A + +S P + P++ +G P
Sbjct: 428 PLAVTVP-SSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSP 486
Query: 150 GKSPTRGST 158
G SP ST
Sbjct: 487 GSSPQHTST 495
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 92 PAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSSQRMP--RQPSATRLPKGGGP 149
P AV++P SS+P++ N G ++G +A A + +S P + P++ +G P
Sbjct: 412 PLAVTVP-SSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSP 470
Query: 150 GKSPTRGST 158
G SP ST
Sbjct: 471 GSSPQHTST 479
>gi|8567388 period 3 [Homo sapiens]
Length = 1201
Score = 31.6 bits (70), Expect = 0.29
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 78 SMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSS------ 131
++ G P P A +L T S P + ++AL + S +S
Sbjct: 971 ALSTGSPPRENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMGL 1030
Query: 132 --QRMPRQPSATRLPKGGGPGKSPTR 155
R P P+AT L G P +SP+R
Sbjct: 1031 PPSRTPSHPTATVLSTGSPPSESPSR 1056
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 31.6 bits (70), Expect = 0.29
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 100 SSVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRG 156
SS+ G +G AA+GG + + +P +P+A R GGG G RG
Sbjct: 36 SSLDSGAGERRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRG 92
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 31.6 bits (70), Expect = 0.29
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 104 ETRGR-NKGSAALGGALALAERSSREGSSQRMPRQPSATRL-----------PKGGGPGK 151
+ RG + +AA GGA A A R ++ Q+ P P R P+ GGPG
Sbjct: 8 DVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGA 67
Query: 152 SPT 154
+ T
Sbjct: 68 AST 70
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 31.6 bits (70), Expect = 0.29
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 104 ETRGR-NKGSAALGGALALAERSSREGSSQRMPRQPSATRL-----------PKGGGPGK 151
+ RG + +AA GGA A A R ++ Q+ P P R P+ GGPG
Sbjct: 8 DVRGEPRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGA 67
Query: 152 SPT 154
+ T
Sbjct: 68 AST 70
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.38
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 77 KSMCAGQRLASEPQD-PAAVSLPTS-SVPETRGRNKGSAALGGALALAERSSREGSSQRM 134
++ GQRL S ++ P A +P PETR K G + +S + +
Sbjct: 136 RTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESL 195
Query: 135 PRQPSATRLPKGGGPGKSPTRGST 158
R A GGPG +P G++
Sbjct: 196 ERALWAQSSQLAGGPGLAPRPGAS 219
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.38
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 77 KSMCAGQRLASEPQD-PAAVSLPTS-SVPETRGRNKGSAALGGALALAERSSREGSSQRM 134
++ GQRL S ++ P A +P PETR K G + +S + +
Sbjct: 136 RTQARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLTPGSGEFGVRSQSCDSTVPESL 195
Query: 135 PRQPSATRLPKGGGPGKSPTRGST 158
R A GGPG +P G++
Sbjct: 196 ERALWAQSSQLAGGPGLAPRPGAS 219
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 31.2 bits (69), Expect = 0.38
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 87 SEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKG 146
S PQ PA+ + P + + +GR A G A R S QR P ATR
Sbjct: 513 SAPQQPASQAAPPT---QGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 147 GGPGKSPTRGS 157
GP G+
Sbjct: 570 SGPAPPKASGA 580
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 31.2 bits (69), Expect = 0.38
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 87 SEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKG 146
S PQ PA+ + P + + +GR A G A R S QR P ATR
Sbjct: 513 SAPQQPASQAAPPT---QGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 147 GGPGKSPTRGS 157
GP G+
Sbjct: 570 SGPAPPKASGA 580
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 31.2 bits (69), Expect = 0.38
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
Query: 82 GQRLASEPQDPAAVSLPTSSVPETRGR--NKGSAALGGALALAERSSREGSSQRMPRQPS 139
G L PQ P S P V RG N G G L + + +P P+
Sbjct: 8 GYSLGRTPQGPECSSAPAVQVGTHRGLEYNPGKILPGSDYGLGNPPALDPKLPHLPLPPA 67
Query: 140 ATRLPKGGGPGKSPTRGS 157
L G P KSP G+
Sbjct: 68 PPTLSDLGQPRKSPLTGT 85
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 30.8 bits (68), Expect = 0.50
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 106 RGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPG 150
RGR K AA GA ALA+ SS E P +P+A LP PG
Sbjct: 482 RGRQKPKAAPEGAGALAQGSSLE------PGRPAAPSLPGEAEPG 520
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 30.8 bits (68), Expect = 0.50
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 106 RGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPG 150
RGR K AA GA ALA+ SS E P +P+A LP PG
Sbjct: 482 RGRQKPKAAPEGAGALAQGSSLE------PGRPAAPSLPGEAEPG 520
>gi|113412653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 30.8 bits (68), Expect = 0.50
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 109 NKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGK 151
N+GS G A E + R+GS+Q P Q R+ GGP K
Sbjct: 12 NQGSFPGGQREAAREEAQRDGSTQGDPTQGGRIRVSTSGGPFK 54
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 30.8 bits (68), Expect = 0.50
Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 7/152 (4%)
Query: 8 PGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLLKLNV 67
P PP L+ K+ + ME+ + A GG P + +++ + +
Sbjct: 370 PPRNDVDPPRKRVDSPMLSRHGKRRPERKSMEVLSITDAGGGG-SPVPTRRALEMAQHSQ 428
Query: 68 APLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSV-PETRGRNKGSAALGGALALAERSS 126
+V + + S P+ P P E RG G + L R
Sbjct: 429 RSRSVSGASTGLSSSP--LSSPRSPVFSFSPEPGAGDEARG---GGSPTSKTQTLPSRGP 483
Query: 127 REGSSQRMPRQPSATRLPKGGGPGKSPTRGST 158
R G + P PSA P G PG + G T
Sbjct: 484 RGGGAGEQPPPPSARSTPLPGPPGSPRSSGGT 515
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.8 bits (68), Expect = 0.50
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 79 MCAGQRLASEPQDPAAVSLPTSSVPETRGRNK-GSAALGGALALAERSSREGSSQRMPRQ 137
+CAG P A ++ RNK GS ++ S GS+ R+P +
Sbjct: 218 VCAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPER 277
Query: 138 PSATRLPKGGGPGKSP 153
P + P G PG+ P
Sbjct: 278 PGPSNPPVGPAPGRHP 293
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 30.8 bits (68), Expect = 0.50
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 89 PQDPAAVSLPTS-SVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGG 147
P+DP S SV +T +G +A GGA SR+ + + P T K
Sbjct: 969 PEDPEKAGQKASLSVSQTGSWRRGMSAQGGA------PSRQKAGTSALKTPGKTDDAKAS 1022
Query: 148 GPGKSPTRGST 158
GK+P +GS+
Sbjct: 1023 EKGKAPLKGSS 1033
>gi|71040090 regulatory factor X, 5 [Homo sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 0.66
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 19/168 (11%)
Query: 2 AAQGVGPGPGSAAPPGLEAAR----QKLAL------RRKKVLSTEEMELYELAQAA--GG 49
A G GPGPG A P GL R +++ + K V T E+ + E + A
Sbjct: 390 ALPGPGPGPGRAPPGGLTQPRGTENREVGIGGDQGPHDKGVKRTAEVPVSEASGQAPPAK 449
Query: 50 AIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAV-SLPTSSVP-ETRG 107
A D+ D + P KS +G+R ++ + AA+ S +S +P ET G
Sbjct: 450 AAKQDIEDTASDAKRKRGRP-----RKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWG 504
Query: 108 RNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTR 155
+ GGA E + Q T G GPG T+
Sbjct: 505 SGGEGNSAGGAERPGPMGEAEKGAVLAQGQGDGTVSKGGRGPGSQHTK 552
>gi|4557843 regulatory factor X, 5 [Homo sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 0.66
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 19/168 (11%)
Query: 2 AAQGVGPGPGSAAPPGLEAAR----QKLAL------RRKKVLSTEEMELYELAQAA--GG 49
A G GPGPG A P GL R +++ + K V T E+ + E + A
Sbjct: 390 ALPGPGPGPGRAPPGGLTQPRGTENREVGIGGDQGPHDKGVKRTAEVPVSEASGQAPPAK 449
Query: 50 AIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAV-SLPTSSVP-ETRG 107
A D+ D + P KS +G+R ++ + AA+ S +S +P ET G
Sbjct: 450 AAKQDIEDTASDAKRKRGRP-----RKKSGGSGERNSTPLKSAAAMESAQSSRLPWETWG 504
Query: 108 RNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTR 155
+ GGA E + Q T G GPG T+
Sbjct: 505 SGGEGNSAGGAERPGPMGEAEKGAVLAQGQGDGTVSKGGRGPGSQHTK 552
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,085,248
Number of Sequences: 37866
Number of extensions: 317765
Number of successful extensions: 2018
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 189
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.