Guide to the Human Genome
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Name: NUP210L Sequence: fasta or formatted (1736aa) NCBI GI: 226958663
Description:

nucleoporin 210kDa-like isoform 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [1888aa] nucleoporin 210kDa-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        102           3
 C cysteine            1.1         19           1
 D aspartate           3.6         62           2
 E glutamate           6.0        104           2
 F phenylalanine       4.6         80           3
 G glycine             5.6         98           2
 H histidine           3.3         57           2
 I isoleucine          6.1        106           2
 K lysine              5.0         87           2
 L leucine            10.4        181           4
 M methionine          2.5         44           2
 N asparagine          4.1         71           2
 P proline             5.2         90           2
 Q glutamine           4.6         79           2
 R arginine            4.2         73           3
 S serine              7.0        122           3
 T threonine           6.9        119           2
 V valine             10.1        175           3
 W tryptophan          0.8         14           1
 Y tyrosine            3.1         53           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleoporin 210kDa-like isoform 2 
NUP210L               0.945   nucleoporin 210kDa-like isoform 1 
NUP210                0.421   nucleoporin 210 
LOC100292626          0.017   PREDICTED: similar to Putative uncharacterized prot...
NISCH                 0.002   nischarin 
TANC1                 0.002   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.002   tetratricopeptide repeat, ankyrin repeat and coiled...
ZFPM1                 0.002   zinc finger protein, multitype 1 
RP1                   0.002   retinitis pigmentosa RP1 protein 
ANKRD50               0.002   ankyrin repeat domain 50 
DSG2                  0.002   desmoglein 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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