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Search of human proteins with 13236524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13236524 pancreatic progenitor cell differentiation and
proliferation factor homolog [Homo sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13236524 pancreatic progenitor cell differentiation and proli... 239 3e-64
gi|55741575 hypothetical protein LOC492307 [Homo sapiens] 40 4e-04
gi|239753613 PREDICTED: similar to hCG1657343 [Homo sapiens] 34 0.029
gi|239748209 PREDICTED: similar to hCG1657343 [Homo sapiens] 34 0.029
gi|239742107 PREDICTED: similar to hCG1657343 [Homo sapiens] 34 0.029
gi|189181750 human immunodeficiency virus type I enhancer bindin... 31 0.18
gi|116089331 human immunodeficiency virus type I enhancer bindin... 31 0.18
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 30 0.32
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 30 0.32
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 30 0.32
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|203098098 shroom family member 3 protein [Homo sapiens] 30 0.32
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 30 0.41
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 0.54
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 0.54
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 0.54
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 0.54
gi|51873049 hypothetical protein LOC8603 [Homo sapiens] 29 0.70
gi|169179951 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|169178983 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239743855 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 0.92
gi|112821688 G protein-regulated inducer of neurite outgrowth 2 ... 29 0.92
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 28 1.2
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh... 28 1.2
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo... 28 1.2
gi|83367077 mucin 16 [Homo sapiens] 28 2.0
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 28 2.0
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 28 2.0
>gi|13236524 pancreatic progenitor cell differentiation and
proliferation factor homolog [Homo sapiens]
Length = 114
Score = 239 bits (611), Expect = 3e-64
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAAIPSSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFF 60
MAAIPSSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFF
Sbjct: 1 MAAIPSSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFF 60
Query: 61 GKSTLPFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS 114
GKSTLPFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS
Sbjct: 61 GKSTLPFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS 114
>gi|55741575 hypothetical protein LOC492307 [Homo sapiens]
Length = 81
Score = 40.0 bits (92), Expect = 4e-04
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MAAIPSSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPP--GLPKADPGHWWASF 58
MA++PS G L+A + YYR+ S SS SS +S++ P GLP+ WW
Sbjct: 1 MASVPSIGCLLARNQYYRK--SSVSSVSSLTSSDSVNFIDDDKPQQGLPEVAESTWWFKS 58
Query: 59 FF 60
FF
Sbjct: 59 FF 60
>gi|239753613 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 5 PSSGSLVATHDYYRRRLGSTSSNSS 29
P G VATHDYYRR GST S+S+
Sbjct: 322 PLRGLPVATHDYYRRLQGSTRSSST 346
>gi|239748209 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 5 PSSGSLVATHDYYRRRLGSTSSNSS 29
P G VATHDYYRR GST S+S+
Sbjct: 322 PLRGLPVATHDYYRRLQGSTRSSST 346
>gi|239742107 PREDICTED: similar to hCG1657343 [Homo sapiens]
Length = 346
Score = 33.9 bits (76), Expect = 0.029
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 5 PSSGSLVATHDYYRRRLGSTSSNSS 29
P G VATHDYYRR GST S+S+
Sbjct: 322 PLRGLPVATHDYYRRLQGSTRSSST 346
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 31.2 bits (69), Expect = 0.18
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 25 SSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTLPFMATVL-----ESAEHSE 79
SS CS P + P PPGL DPG + G L L E A +
Sbjct: 1992 SSPQRCSPAREPQASAPSPPGL-HVDPGRGMGALPCGSPRLQLSPLTLCPLGRELAPRAH 2050
Query: 80 PPQASSSMTACGLARDAP--RKQPGGQSSTASAGPP 113
T GL R +P R PG S + PP
Sbjct: 2051 VLSKLEGTTDPGLPRYSPTRRWSPGQAESPPRSAPP 2086
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 31.2 bits (69), Expect = 0.18
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 25 SSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTLPFMATVL-----ESAEHSE 79
SS CS P + P PPGL DPG + G L L E A +
Sbjct: 1992 SSPQRCSPAREPQASAPSPPGL-HVDPGRGMGALPCGSPRLQLSPLTLCPLGRELAPRAH 2050
Query: 80 PPQASSSMTACGLARDAP--RKQPGGQSSTASAGPP 113
T GL R +P R PG S + PP
Sbjct: 2051 VLSKLEGTTDPGLPRYSPTRRWSPGQAESPPRSAPP 2086
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 37 GEAIPHPPGLPKA---DPGHWWASFFFGKSTLPFMATVLESAEHSEPPQAS--------- 84
GE + PP +A +PGHW T P A L A S P+A+
Sbjct: 142 GEILKFPPREKRASSAEPGHWEKRQDKRLETHPCRAPPLPPARRSPLPRAACAHPRRPRP 201
Query: 85 -SSMTACGLARDAPRKQPGGQSSTASAGP 112
+ T CG AR P G A P
Sbjct: 202 LAGTTFCGGARVLSNPPPSGSGGDARPSP 230
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 6 SSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTL 65
SSG+ T R T S S + TE G P P A P H ++
Sbjct: 40 SSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-------PRTRS 92
Query: 66 PFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P + + + PP+ S + L AP +PG S+ AS P
Sbjct: 93 PPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 6 SSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTL 65
SSG+ T R T S S + TE G P P A P H ++
Sbjct: 40 SSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-------PRTRS 92
Query: 66 PFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P + + + PP+ S + L AP +PG S+ AS P
Sbjct: 93 PPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 6 SSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTL 65
SSG+ T R T S S + TE G P P A P H ++
Sbjct: 40 SSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-------PRTRS 92
Query: 66 PFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P + + + PP+ S + L AP +PG S+ AS P
Sbjct: 93 PPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 6 SSGSLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTL 65
SSG+ T R T S S + TE G P P A P H ++
Sbjct: 40 SSGTCRLTRSRKSRLERGTFSPESAAGTEVSGAPHPDSRTRPAARPPH-------PRTRS 92
Query: 66 PFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P + + + PP+ S + L AP +PG S+ AS P
Sbjct: 93 PPGRSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPGCSSARASPAP 139
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 30.4 bits (67), Expect = 0.32
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 3 AIPSSGSLVATHDYYRRRLGSTSSNSSCSST-----ECPGEAIPHPPGLPKADPGHWWAS 57
A P GS + Y R G T +++S +ST E P + PH L + PG AS
Sbjct: 708 AAPDLGSHLDRQVSYPRPEGRTGASASFNSTDPSPEEPPAPSHPHTSSLGRRGPGPGSAS 767
Query: 58 FFFGKSTLPFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTAS 109
G +VLE E + S + G + +P ST+S
Sbjct: 768 ALQGFQYGKPHCSVLEKVSKFEQREQGSQRPSVGGSGFGHNYRPHRTVSTSS 819
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 9 SLVATHDYYRRRLGSTSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTLPFM 68
SL T+ Y GS S + E PG A PP P P G + P
Sbjct: 42 SLSVTYLCYSLLGGSGSLQFPLALQESPGAAAEPPPSPPP--PSLLPTPVRLGAPSQPPA 99
Query: 69 ATVLESAEHSEPPQASSSMTACG 91
L++A H EPP+ A G
Sbjct: 100 PPPLDNASHGEPPEPPEQPAAPG 122
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 32 STECPGE----AIPHPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEHSE---PPQAS 84
S CPG+ +P PGLP A G + G T F S EH E P
Sbjct: 719 SLGCPGKMGEPGLPGKPGLPGAK-GEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 85 SSMTACGLARDAPRKQPGGQSSTASAGPP 113
T D PR PG GPP
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGEQGPP 806
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 32 STECPGE----AIPHPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEHSE---PPQAS 84
S CPG+ +P PGLP A G + G T F S EH E P
Sbjct: 719 SLGCPGKMGEPGLPGKPGLPGAK-GEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 85 SSMTACGLARDAPRKQPGGQSSTASAGPP 113
T D PR PG GPP
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGEQGPP 806
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 32 STECPGE----AIPHPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEHSE---PPQAS 84
S CPG+ +P PGLP A G + G T F S EH E P
Sbjct: 719 SLGCPGKMGEPGLPGKPGLPGAK-GEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 85 SSMTACGLARDAPRKQPGGQSSTASAGPP 113
T D PR PG GPP
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGEQGPP 806
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.6 bits (65), Expect = 0.54
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 32 STECPGE----AIPHPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEHSE---PPQAS 84
S CPG+ +P PGLP A G + G T F S EH E P
Sbjct: 719 SLGCPGKMGEPGLPGKPGLPGAK-GEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 85 SSMTACGLARDAPRKQPGGQSSTASAGPP 113
T D PR PG GPP
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGEQGPP 806
>gi|51873049 hypothetical protein LOC8603 [Homo sapiens]
Length = 1224
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 20 RLGSTSSNSS-CSSTECPGEAIPHPPGLPKAD 50
++ STSS+SS E GE+ PPG PK D
Sbjct: 345 QISSTSSSSSEADDEEADGESSGEPPGAPKED 376
>gi|169179951 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 18 RRRLGSTSSNSSCSSTECPGEAIPHPPGLPKA--DPGHWWASFFFGKSTLPFMATVLESA 75
RR+ + S+ SSC S PG A P P GL +A P H + + +
Sbjct: 87 RRKEAANSAASSCVSL--PGLARPEPSGLKEAGNSPNH---------NNIREQPRRPLAP 135
Query: 76 EHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS 114
HS + + C R + G S ASA PPS
Sbjct: 136 SHSRGASRTPAWVKCSQRR--AQGAQGDTSPAASAAPPS 172
>gi|169178983 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 18 RRRLGSTSSNSSCSSTECPGEAIPHPPGLPKA--DPGHWWASFFFGKSTLPFMATVLESA 75
RR+ + S+ SSC S PG A P P GL +A P H + + +
Sbjct: 87 RRKEAANSAASSCVSL--PGLARPEPSGLKEAGNSPNH---------NNIREQPRRPLAP 135
Query: 76 EHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS 114
HS + + C R + G S ASA PPS
Sbjct: 136 SHSRGASRTPAWVKCSQRR--AQGAQGDTSPAASAAPPS 172
>gi|239743855 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 0.92
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 18 RRRLGSTSSNSSCSSTECPGEAIPHPPGLPKA--DPGHWWASFFFGKSTLPFMATVLESA 75
RR+ + S+ SSC S PG A P P GL +A P H + + +
Sbjct: 87 RRKEAANSAASSCVSL--PGLARPEPSGLKEAGNSPNH---------NNIREQPRRPLAP 135
Query: 76 EHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGPPS 114
HS + + C R + G S ASA PPS
Sbjct: 136 SHSRGASRTPAWVKCSQRR--AQGAQGDTSPAASAAPPS 172
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 23 STSSNSSCSSTECPGEAIPHPPGLPK 48
S+SS+SS SS+ P A P P LPK
Sbjct: 2636 SSSSSSSSSSSSSPSPAKPGPQALPK 2661
>gi|112821688 G protein-regulated inducer of neurite outgrowth 2
[Homo sapiens]
Length = 458
Score = 28.9 bits (63), Expect = 0.92
Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 26/127 (20%)
Query: 12 ATHDYYRRRLGSTSSNSSCSSTEC--PGEAIPHPPGLPKADP---GHWWASFFFGKSTL- 65
A+ ++ +LG S+ E P P PKA P GHWW+S ST+
Sbjct: 43 ASSTVWQAQLGEASTRPQAPEEEGNPPESMKPARASGPKARPSAGGHWWSSTVGNVSTMG 102
Query: 66 ---------PFMATVLESAE----------HSEPPQASSSMTACGLAR-DAPRKQPGGQS 105
P A + S HS +AS S +A G + + QPGG S
Sbjct: 103 GSDLCRLRAPSAAAMQRSHSDLVRSTQMRGHSGARKASLSCSALGSSPVHRAQLQPGGTS 162
Query: 106 STASAGP 112
P
Sbjct: 163 GQGGQAP 169
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 28.5 bits (62), Expect = 1.2
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 7 SGSLVATHDYYRRRLG-STSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTL 65
S + +T R G S + CPG P P A P +SF +
Sbjct: 1999 SETSASTESLLEERAGRGASEGPPAPALPCPGAPTPSPLPTVAAPPRRRPSSFVTVRVKT 2058
Query: 66 PFMATVLESAEHSEPPQASSSMTACGLARDAPRKQPGGQSSTA 108
P ++ +A PP GL PR PG + + A
Sbjct: 2059 PRRTPIMPTANIKLPP---------GLPSHLPRWAPGAREAAA 2092
>gi|14719400 ADP-ribosylation factor binding protein 3 isoform short
[Homo sapiens]
Length = 690
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 21 LGSTSSNSSCSSTE----CPGEAIPHPPGLPKADPGH-WWASFFFGKSTLPFMATVLESA 75
LG +S++++ S + C G A P P PK G+ W +S L F +
Sbjct: 345 LGPSSTSNALSWLDEELLCLGLADPAPNVPPKESAGNSQWHLLQREQSDLDFFS------ 398
Query: 76 EHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P+ ++ ACG A DAP QP SS++S P
Sbjct: 399 -----PRPGTA--ACG-ASDAPLLQPSAPSSSSSQAP 427
>gi|20336267 ADP-ribosylation factor binding protein 3 isoform long
[Homo sapiens]
Length = 723
Score = 28.5 bits (62), Expect = 1.2
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 19/97 (19%)
Query: 21 LGSTSSNSSCSSTE----CPGEAIPHPPGLPKADPGH-WWASFFFGKSTLPFMATVLESA 75
LG +S++++ S + C G A P P PK G+ W +S L F +
Sbjct: 378 LGPSSTSNALSWLDEELLCLGLADPAPNVPPKESAGNSQWHLLQREQSDLDFFS------ 431
Query: 76 EHSEPPQASSSMTACGLARDAPRKQPGGQSSTASAGP 112
P+ ++ ACG A DAP QP SS++S P
Sbjct: 432 -----PRPGTA--ACG-ASDAPLLQPSAPSSSSSQAP 460
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 27.7 bits (60), Expect = 2.0
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 21/99 (21%)
Query: 23 STSSNSSCSSTECP-GEAIP----HPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEH 77
S SS S TE P G A P H P +P + G P A+ ES +
Sbjct: 2949 SASSFQSTGFTETPEGSASPSMAGHEPRVPTSGTGD------------PRYAS--ESMSY 2994
Query: 78 SEPPQASSSMTACGLARDAPRKQPGGQS--STASAGPPS 114
+P +ASS+MT+ LA GQ+ S +S+ P S
Sbjct: 2995 PDPSKASSAMTSTSLASKLTTLFSTGQAARSGSSSSPIS 3033
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 42 HPPGLPKADPGHWWASFFFGKSTLPFMATVLESA 75
H PG+ K DP W A+F ++LP + V + +
Sbjct: 65 HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKS 98
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/99 (25%), Positives = 32/99 (32%), Gaps = 16/99 (16%)
Query: 23 STSSNSSCSSTECPGEAIPHPPGLPKADPGHWWASFFFGKSTLPFMATVLESAEHSEP-- 80
S + S T PG ++P P P+A P S P A S +EP
Sbjct: 2359 SQAEADKMSGTSTPGPSLPPPGAAPEAGPS--------APSRRPPGADAEGSEREAEPIP 2410
Query: 81 ------PQASSSMTACGLARDAPRKQPGGQSSTASAGPP 113
+ A G + DAP K T G P
Sbjct: 2411 KMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLGKP 2449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.124 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,993,904
Number of Sequences: 37866
Number of extensions: 288252
Number of successful extensions: 1209
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1147
Number of HSP's gapped (non-prelim): 122
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.