BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapiens] (118 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi... 250 1e-67 gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo sapi... 158 1e-39 gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo sapi... 138 1e-33 gi|17986270 dopamine receptor D2 isoform short [Homo sapiens] 35 0.017 gi|4503385 dopamine receptor D2 isoform long [Homo sapiens] 33 0.037 gi|239753510 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41 gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo ... 30 0.41 gi|8922927 hypothetical protein LOC55321 [Homo sapiens] 30 0.41 gi|28610151 interleukin 7 receptor precursor [Homo sapiens] 29 0.70 gi|153945755 zinc finger protein 608 [Homo sapiens] 29 0.70 gi|6912446 potassium voltage-gated channel, subfamily H, member ... 28 1.2 gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2 ... 28 1.2 gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1... 28 1.2 gi|239742474 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6 gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 27 3.5 gi|4503489 ephrin-B3 precursor [Homo sapiens] 27 3.5 gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens] 27 3.5 gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens] 27 3.5 gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens] 27 3.5 gi|71274136 family with sequence similarity 24, member A [Homo s... 27 3.5 gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 27 4.5 gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 27 4.5 gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 27 4.5 gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Ho... 27 4.5 gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5 gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 27 4.5 gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 27 4.5 gi|94536846 synaptotagmin VIII [Homo sapiens] 27 4.5 gi|11545920 lin-7 homolog B [Homo sapiens] 26 5.9 gi|110225358 tetratricopeptide repeat domain 7A [Homo sapiens] 26 5.9 >gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapiens] Length = 118 Score = 250 bits (639), Expect = 1e-67 Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWPRAPQSRNSTMHLCR 60 MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWPRAPQSRNSTMHLCR Sbjct: 1 MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWPRAPQSRNSTMHLCR 60 Query: 61 GCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLWSSQ 118 GCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLWSSQ Sbjct: 61 GCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLWSSQ 118 >gi|45505161 leukocyte specific transcript 1 isoform 2 [Homo sapiens] Length = 75 Score = 158 bits (399), Expect = 1e-39 Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 46 PRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQ 105 PRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQ Sbjct: 3 PRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQ 62 Query: 106 PRRVDRVPLWSSQ 118 PRRVDRVPLWSSQ Sbjct: 63 PRRVDRVPLWSSQ 75 >gi|45580740 leukocyte specific transcript 1 isoform 4 [Homo sapiens] Length = 63 Score = 138 bits (347), Expect = 1e-33 Identities = 63/63 (100%), Positives = 63/63 (100%) Query: 56 MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 115 MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW Sbjct: 1 MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQPRRVDRVPLW 60 Query: 116 SSQ 118 SSQ Sbjct: 61 SSQ 63 >gi|17986270 dopamine receptor D2 isoform short [Homo sapiens] Length = 414 Score = 34.7 bits (78), Expect = 0.017 Identities = 17/33 (51%), Positives = 20/33 (60%) Query: 74 AETREAPRRIQELTMPALLRTNPPEHPRHLPQP 106 A +EA RR QEL M L T+PPE R+ P P Sbjct: 238 APLKEAARRAQELEMEMLSSTSPPERTRYSPIP 270 >gi|4503385 dopamine receptor D2 isoform long [Homo sapiens] Length = 443 Score = 33.5 bits (75), Expect = 0.037 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 5/75 (6%) Query: 36 RRVKRLERSWPRAPQSRNST----MHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPAL 91 +R R R+ RAP N T M LC + EA RR QEL M L Sbjct: 226 KRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIM-KSNGSFPVNRRRVEAARRAQELEMEML 284 Query: 92 LRTNPPEHPRHLPQP 106 T+PPE R+ P P Sbjct: 285 SSTSPPERTRYSPIP 299 >gi|239753510 PREDICTED: hypothetical protein [Homo sapiens] Length = 284 Score = 30.0 bits (66), Expect = 0.41 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 85 ELTMPALLRTNPPEHPRHLP 104 EL + ALL + PP HP HLP Sbjct: 121 ELLVEALLTSKPPAHPSHLP 140 >gi|239742053 PREDICTED: hypothetical protein XP_002342380 [Homo sapiens] Length = 311 Score = 30.0 bits (66), Expect = 0.41 Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 85 ELTMPALLRTNPPEHPRHLP 104 EL + ALL + PP HP HLP Sbjct: 148 ELLVEALLTSKPPAHPSHLP 167 >gi|8922927 hypothetical protein LOC55321 [Homo sapiens] Length = 256 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%) Query: 7 DICIYGGLGL---GGLLLLAVVLLSACLCWLHRR 37 D CI GLGL GG+LL ++++S C L+RR Sbjct: 174 DRCIIAGLGLLTVGGMLLSVLLMVSLCKGELYRR 207 >gi|28610151 interleukin 7 receptor precursor [Homo sapiens] Length = 459 Score = 29.3 bits (64), Expect = 0.70 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Query: 22 LAVVLLSACLCWLHRRVKRLERSWPRAPQSRNSTMHLCR 60 +A++++ AC+ W +R+K + WP P + + HLC+ Sbjct: 253 VALLVILACVLW-KKRIKPIV--WPSLPDHKKTLEHLCK 288 >gi|153945755 zinc finger protein 608 [Homo sapiens] Length = 1512 Score = 29.3 bits (64), Expect = 0.70 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 36 RRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRD 69 +RV+ RS P PQ + T L +GC P + D Sbjct: 521 KRVRTNSRSTPTTPQGKPETTFLDQGCSSPVLID 554 >gi|6912446 potassium voltage-gated channel, subfamily H, member 4 [Homo sapiens] Length = 1017 Score = 28.5 bits (62), Expect = 1.2 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 38 VKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNP 96 + R RS PR Q R+ ++ P++ + SGAE PR + L +P L P Sbjct: 697 LSRFSRS-PRLSQPRSESLGSSSDKTLPSITEAESGAEPGGGPRPRRPLLLPNLSPARP 754 >gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2 [Homo sapiens] Length = 638 Score = 28.5 bits (62), Expect = 1.2 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 1 MLSRNDDIC-IYGGLGLGGLLLLAVVLLSACLCWL---HRRVKRLERSWPRAPQSRNSTM 56 +LS +C ++ G + LL L +LL A L RR++R SWPRA + ++ Sbjct: 524 LLSAMGSLCSLWFGASVLSLLELLELLLDASALTLVLGGRRLRRAWFSWPRASPASGASS 583 Query: 57 HLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQP 106 Q P TS P + + +P +L E PQP Sbjct: 584 IKPEASQMPPPAGGTSDDPEPSGP-HLPRVMLPGVLAGVSAEESWAGPQP 632 >gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1 [Homo sapiens] Length = 704 Score = 28.5 bits (62), Expect = 1.2 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 1 MLSRNDDIC-IYGGLGLGGLLLLAVVLLSACLCWL---HRRVKRLERSWPRAPQSRNSTM 56 +LS +C ++ G + LL L +LL A L RR++R SWPRA + ++ Sbjct: 590 LLSAMGSLCSLWFGASVLSLLELLELLLDASALTLVLGGRRLRRAWFSWPRASPASGASS 649 Query: 57 HLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPEHPRHLPQP 106 Q P TS P + + +P +L E PQP Sbjct: 650 IKPEASQMPPPAGGTSDDPEPSGP-HLPRVMLPGVLAGVSAEESWAGPQP 698 >gi|239742474 PREDICTED: hypothetical protein [Homo sapiens] Length = 589 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 39 KRLERSWPRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAPRRIQELTMPALLRTNPPE 98 K ER PR P+ ++ H RG + AVR++ + + ++E+ L R P Sbjct: 211 KHTERG-PRGPRQGSTDKHTERGVRVGAVREVPTSTQRGGRVGAVREVRTSTLER--GPR 267 Query: 99 HPRHLPQPRRVDRVP 113 PR + +R P Sbjct: 268 GPRQGSTDKHTERGP 282 >gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo sapiens] Length = 160 Score = 26.9 bits (58), Expect = 3.5 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 13 GLGLGGLLLLAVVLLSACLCW--LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDL 70 GLG+ L+LLA V+ LC+ L+ + +RL+ +ST + A+ Sbjct: 70 GLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEASSTQEGKSNGKTKALNSN 129 Query: 71 TSGAETR----EAPRRIQELTMPA 90 + T EA IQE TM A Sbjct: 130 AASNATNETYYEADDIIQEKTMDA 153 >gi|4503489 ephrin-B3 precursor [Homo sapiens] Length = 340 Score = 26.9 bits (58), Expect = 3.5 Identities = 14/37 (37%), Positives = 16/37 (43%) Query: 10 IYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWP 46 + G G LLLL V +CW RR K E P Sbjct: 228 VAGAAGGLALLLLGVAGAGGAMCWRRRRAKPSESRHP 264 >gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens] Length = 573 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 15 GLGGLLLLAVVLLSACLCWLHRRVKRLERSWP 46 G GG+ +L C W RR+K+L R P Sbjct: 517 GFGGITMLFTGYFVLCCSWSFRRLKKLCRPLP 548 >gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens] Length = 609 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 15 GLGGLLLLAVVLLSACLCWLHRRVKRLERSWP 46 G GG+ +L C W RR+K+L R P Sbjct: 553 GFGGITMLFTGYFVLCCSWSFRRLKKLCRPLP 584 >gi|188536110 leucine rich repeat neuronal 4 [Homo sapiens] Length = 740 Score = 26.9 bits (58), Expect = 3.5 Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 8 ICIYGGLGLGGLLLLAVVLLSACLC 32 + + G GLLL + V+LSACLC Sbjct: 682 LLLSGLCAASGLLLASTVVLSACLC 706 >gi|71274136 family with sequence similarity 24, member A [Homo sapiens] Length = 105 Score = 26.9 bits (58), Expect = 3.5 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 18/69 (26%) Query: 14 LGLGG-LLLLAVVLLSACLCWLHRRVKRLERS-----------------WPRAPQSRNST 55 +G+G LL+ A+VLLS C + K L+ + W Q++ +T Sbjct: 13 IGIGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKVCWATNSQAKATT 72 Query: 56 MHLCRGCQC 64 M C QC Sbjct: 73 MESCPSLQC 81 >gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A isoform 2 [Homo sapiens] Length = 548 Score = 26.6 bits (57), Expect = 4.5 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 17/98 (17%) Query: 34 LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAP-----RRIQEL-- 86 +HR+V + R+ P A S + + + + P+ R+L+ E + P RI+E Sbjct: 241 VHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRK 300 Query: 87 ----TMPALLRTNP---PEHPRHLPQPRRVDRVPLWSS 117 T ++++ +P P PR P PRR+ VP SS Sbjct: 301 RTYETFKSIMKKSPFSGPTDPR--PPPRRI-AVPSRSS 335 >gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A isoform 1 [Homo sapiens] Length = 551 Score = 26.6 bits (57), Expect = 4.5 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 17/98 (17%) Query: 34 LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDLTSGAETREAP-----RRIQEL-- 86 +HR+V + R+ P A S + + + + P+ R+L+ E + P RI+E Sbjct: 244 VHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRK 303 Query: 87 ----TMPALLRTNP---PEHPRHLPQPRRVDRVPLWSS 117 T ++++ +P P PR P PRR+ VP SS Sbjct: 304 RTYETFKSIMKKSPFSGPTDPR--PPPRRI-AVPSRSS 338 >gi|217330639 phosphoinositide-3-kinase, regulatory subunit 5 [Homo sapiens] Length = 880 Score = 26.6 bits (57), Expect = 4.5 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 68 RDLTSGAETREAPRRIQELTMPALLRTNPP---EHPRHLPQPRRVDRVPLW 115 R L ++T RR L P +PP + R LPQP+ ++P W Sbjct: 441 RSLEGSSDTALPLRRAGSLCSPLDEPVSPPSRAQRSRSLPQPKLGTQLPSW 491 >gi|217330622 phosphoinositide-3-kinase, regulatory subunit 5 [Homo sapiens] Length = 880 Score = 26.6 bits (57), Expect = 4.5 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 68 RDLTSGAETREAPRRIQELTMPALLRTNPP---EHPRHLPQPRRVDRVPLW 115 R L ++T RR L P +PP + R LPQP+ ++P W Sbjct: 441 RSLEGSSDTALPLRRAGSLCSPLDEPVSPPSRAQRSRSLPQPKLGTQLPSW 491 >gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] Length = 292 Score = 26.6 bits (57), Expect = 4.5 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 72 SGAETREAPRRIQELTMP-ALLRTNPPEHPRHLPQPRR 108 +GA R A R++ P +L RT+ HP H P P R Sbjct: 13 AGAGRRPAARQVAPPGGPXSLARTHSRRHPDHAPPPGR 50 >gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo sapiens] Length = 160 Score = 26.6 bits (57), Expect = 4.5 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 13 GLGLGGLLLLAVVLLSACLCW--LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDL 70 GLG+ L+LLA V+ LC+ L+ + +RL+ +ST + A+ Sbjct: 70 GLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSNGKTKALNSN 129 Query: 71 TSGAETR----EAPRRIQELTMPA 90 + T EA IQE TM A Sbjct: 130 AASNATNETYYEADDIIQEKTMDA 153 >gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo sapiens] Length = 160 Score = 26.6 bits (57), Expect = 4.5 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 13 GLGLGGLLLLAVVLLSACLCW--LHRRVKRLERSWPRAPQSRNSTMHLCRGCQCPAVRDL 70 GLG+ L+LLA V+ LC+ L+ + +RL+ +ST + A+ Sbjct: 70 GLGIAALVLLAFVISVCVLCYLFLYTKPQRLDTGLKLQHLEPSSTQEGKSNGKTKALNSN 129 Query: 71 TSGAETR----EAPRRIQELTMPA 90 + T EA IQE TM A Sbjct: 130 AASNATNETYYEADDIIQEKTMDA 153 >gi|94536846 synaptotagmin VIII [Homo sapiens] Length = 401 Score = 26.6 bits (57), Expect = 4.5 Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 10 IYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWPRAPQSRNSTMHL 58 I G L G LL+ ++ + C C HR+ R + S +T HL Sbjct: 52 IAGALAAGVLLVSCLLCAACCCCRRHRKKPRDKESVGLGSARGTTTTHL 100 >gi|11545920 lin-7 homolog B [Homo sapiens] Length = 207 Score = 26.2 bits (56), Expect = 5.9 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%) Query: 38 VKRLERSWPRAPQSRNSTMHLCRGCQCPAVR----------DLTSGAETREAPRRIQELT 87 ++RL+RS PQ + + + C A+R D+T AE R + T Sbjct: 21 LERLQRSGELPPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITGSAEIR--AHATAKAT 78 Query: 88 MPALLRTNPPEHPRHLPQPR 107 + A + HPR + P+ Sbjct: 79 VAAFTASEGHAHPRVVELPK 98 >gi|110225358 tetratricopeptide repeat domain 7A [Homo sapiens] Length = 858 Score = 26.2 bits (56), Expect = 5.9 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Query: 18 GLLLLAVVLLSACLCWLHRRVK----RLERSWPRAPQSRN 53 G LLLA LL CL H ++K LE++ P+ +++N Sbjct: 65 GKLLLAEALLEQCLKENHAKIKDSMPLLEKNEPKMSEAKN 104 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.325 0.139 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,375,290 Number of Sequences: 37866 Number of extensions: 242309 Number of successful extensions: 1126 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 1107 Number of HSP's gapped (non-prelim): 37 length of query: 118 length of database: 18,247,518 effective HSP length: 88 effective length of query: 30 effective length of database: 14,915,310 effective search space: 447459300 effective search space used: 447459300 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.