Search of human proteins with 45505157

Search of human proteins with 45505157

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45505157 leukocyte specific transcript 1 isoform 3 [Homo
sapiens]
         (51 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45505157 leukocyte specific transcript 1 isoform 3 [Homo sapi...   109   4e-25
gi|45580736 leukocyte specific transcript 1 isoform 5 [Homo sapi...    82   1e-16
gi|55953076 connexin 50 [Homo sapiens]                                 27   3.5  
gi|55741632 fibronectin type III and SPRY domain containing 2 [H...    27   4.5  
gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo ...    26   7.7  

>gi|45505157 leukocyte specific transcript 1 isoform 3 [Homo
          sapiens]
          Length = 51

 Score =  109 bits (273), Expect = 4e-25
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MLSRNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51
          MLSRNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT
Sbjct: 1  MLSRNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51


>gi|45580736 leukocyte specific transcript 1 isoform 5 [Homo
          sapiens]
          Length = 39

 Score = 81.6 bits (200), Expect = 1e-16
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 15 RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51
          RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT
Sbjct: 3  RLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 39


>gi|55953076 connexin 50 [Homo sapiens]
          Length = 433

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 4   RNDVKRL--ERSWRLPVPSSEGPDLRGRDKRGTKEDPRAD 41
           + + +RL  E   ++ VP  E  +  G DK G KE+P+++
Sbjct: 350 KEEAERLTTEEQEKVAVPEGEKVETPGVDKEGEKEEPQSE 389


>gi|55741632 fibronectin type III and SPRY domain containing 2 [Homo
           sapiens]
          Length = 749

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 1   MLSRNDVKRLERSWRLPVPSSEGPDL--RGRDKRGTKEDPRADY 42
           M+ R D  R +R WRL   ++E  DL   G    G  +D R  Y
Sbjct: 107 MMKRRDPAREQRDWRLSGEAAEAEDLGFGGWGSAGQCQDLREAY 150


>gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 4   RNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51
           R  VK   R + +P PS   P  R R +RG +   R          P+
Sbjct: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPS 182


>gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 4   RNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51
           R  VK   R + +P PS   P  R R +RG +   R          P+
Sbjct: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPS 182


>gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo
           sapiens]
          Length = 208

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 4   RNDVKRLERSWRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT 51
           R  VK   R + +P PS   P  R R +RG +   R          P+
Sbjct: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPS 182


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,433,741
Number of Sequences: 37866
Number of extensions: 84598
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 7
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.