Search of human proteins with 4506887

Search of human proteins with 4506887

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506887 selenoprotein W, 1 [Homo sapiens]
         (87 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506887 selenoprotein W, 1 [Homo sapiens]                          173   3e-44
gi|33186895 selenoprotein V [Homo sapiens]                             77   2e-15
gi|42822891 hypothetical protein LOC84299 [Homo sapiens]               41   2e-04
gi|63025206 hypothetical protein LOC221061 [Homo sapiens]              30   0.53 
gi|13375695 cysteinyl-tRNA synthetase 2, mitochondrial [Homo sap...    27   3.5  

>gi|4506887 selenoprotein W, 1 [Homo sapiens]
          Length = 87

 Score =  173 bits (438), Expect = 3e-44
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MALAVRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60
          MALAVRVVYCGA GYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK
Sbjct: 1  MALAVRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSK 60

Query: 61 KKGDGYVDTESKFLKLVAAIKAALAQG 87
          KKGDGYVDTESKFLKLVAAIKAALAQG
Sbjct: 61 KKGDGYVDTESKFLKLVAAIKAALAQG 87


>gi|33186895 selenoprotein V [Homo sapiens]
          Length = 346

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 1/76 (1%)

Query: 5   VRVVYCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGD 64
           +RV YCG   Y  +Y+ LKK LE +FP  L    +   QATG FEV V G+L+HSKK+GD
Sbjct: 265 IRVTYCGLUSYSLRYILLKKSLEQQFPNHLLFEEDRAAQATGEFEVFVNGRLVHSKKRGD 324

Query: 65  GYVDTESKFLKLVAAI 80
           G+V+ ES+  K+V+ I
Sbjct: 325 GFVN-ESRLQKIVSVI 339


>gi|42822891 hypothetical protein LOC84299 [Homo sapiens]
          Length = 115

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 5  VRVV--YCGAUGYKSKYLQLKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKK 62
          VR+V  YC   G+++ YL+L   +++++PG ++I  E     TG FE+ + G+L+ SK +
Sbjct: 23 VRIVVEYCEPCGFEATYLELASAVKEQYPG-IEI--ESRLGGTGAFEIEINGQLVFSKLE 79

Query: 63 GDGY 66
            G+
Sbjct: 80 NGGF 83


>gi|63025206 hypothetical protein LOC221061 [Homo sapiens]
          Length = 890

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 29  EFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKL 76
           EFPG L +   G P+A G  E+M    L      G+G  D  +  LKL
Sbjct: 372 EFPGPLSVTSHGRPEAPGTKELMSGVHLEMMSPGGEG--DLHTPMLKL 417


>gi|13375695 cysteinyl-tRNA synthetase 2, mitochondrial [Homo
           sapiens]
          Length = 564

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 39  EGTPQATGFFEVMVAGKLIHSKKKGDGYVDTES---KFLKLVAAIKAALAQ 86
           E  PQ   F E ++A    +S  KG+ Y D +S   K+ KLV  +   + +
Sbjct: 167 ENIPQIISFIEGIIARGNAYSTAKGNVYFDLKSRGDKYGKLVGVVPGPVGE 217


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,072,466
Number of Sequences: 37866
Number of extensions: 118490
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.