SQSTM1 29084

Name: SQSTM1	Sequence: fasta or formatted (440aa)		NCBI GI: 4505571
Description: sequestosome 1 isoform 1		Referenced in: Ubiquitin and Related Protein Modifications
Other entries for this name: alt prot [356aa] sequestosome 1 isoform 2 alt prot [356aa] sequestosome 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 33 3 C cysteine 3.2 14 2 D aspartate 5.7 25 3 E glutamate 9.3 41 2 F phenylalanine 2.7 12 1 G glycine 9.1 40 2 H histidine 3.0 13 1 I isoleucine 2.5 11 1 K lysine 4.5 20 2 L leucine 8.0 35 2 M methionine 2.3 10 1 N asparagine 2.0 9 1 P proline 9.8 43 3 Q glutamine 2.7 12 1 R arginine 5.7 25 2 S serine 11.1 49 3 T threonine 3.2 14 1 V valine 4.3 19 2 W tryptophan 1.4 6 1 Y tyrosine 2.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sequestosome 1 isoform 1 SQSTM1 0.812 sequestosome 1 isoform 2 SQSTM1 0.812 sequestosome 1 isoform 2 NBR1 0.034 neighbor of BRCA1 gene 1 NBR1 0.034 neighbor of BRCA1 gene 1 NBR1 0.034 neighbor of BRCA1 gene 1 MIB1 0.026 mindbomb homolog 1 HERC2 0.025 hect domain and RLD 2 MIB2 0.022 mindbomb homolog 2 KCMF1 0.021 potassium channel modulatory factor 1 ZZEF1 0.020 zinc finger, ZZ type with EF hand domain 1 SYNJ1 0.017 synaptojanin 1 isoform d COL5A2 0.017 alpha 2 type V collagen preproprotein MLLT1 0.017 myeloid/lymphoid or mixed-lineage leukemia (trithora... C10orf140 0.017 hypothetical protein LOC387640 ZSWIM2 0.016 zinc finger, SWIM domain containing 2 SRRM2 0.016 splicing coactivator subunit SRm300 DYTN 0.016 dystrotelin RP1L1 0.016 retinitis pigmentosa 1-like 1 PELP1 0.013 proline, glutamic acid and leucine rich protein 1 [... TNRC18 0.013 trinucleotide repeat containing 18 TRIP12 0.013 thyroid hormone receptor interactor 12 MAP4 0.013 microtubule-associated protein 4 isoform 4 MAP4 0.013 microtubule-associated protein 4 isoform 1 DTNA 0.013 dystrobrevin alpha isoform 1 DCAF5 0.012 WD repeat domain 22 SYNJ1 0.012 synaptojanin 1 isoform a DTNA 0.012 dystrobrevin alpha isoform 3 TRDN 0.012 triadin NCOR2 0.012 nuclear receptor co-repressor 2 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.