Guide to the Human Genome
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Name: NTF3 Sequence: fasta or formatted (257aa) NCBI GI: 4505469
Description:

neurotrophin 3 isoform 2 preproprotein

Referenced in:

Neurons
Receptor Tyrosine Kinases
TNF and Related Signals

Other entries for this name:
alt prot [270aa] neurotrophin 3 isoform 1 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         13           1
 C cysteine            2.3          6           1
 D aspartate           5.1         13           2
 E glutamate           5.8         15           1
 F phenylalanine       1.6          4           1
 G glycine             5.1         13           2
 H histidine           1.6          4           1
 I isoleucine          5.8         15           2
 K lysine              7.0         18           1
 L leucine             8.6         22           2
 M methionine          1.9          5           1
 N asparagine          4.7         12           2
 P proline             5.4         14           3
 Q glutamine           4.7         12           2
 R arginine            8.6         22           2
 S serine              9.3         24           2
 T threonine           5.1         13           1
 V valine              6.6         17           2
 W tryptophan          1.6          4           1
 Y tyrosine            4.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurotrophin 3 isoform 2 preproprotein 
NTF3                  1.000   neurotrophin 3 isoform 1 preproprotein 
NGF                   0.317   nerve growth factor, beta polypeptide precursor [Hom...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform e 
BDNF                  0.295   brain-derived neurotrophic factor isoform d preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a preprop...
BDNF                  0.295   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.295   brain-derived neurotrophic factor isoform c prepropr...
BDNF                  0.295   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.295   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.295   brain-derived neurotrophic factor isoform a prepropr...
BDNF                  0.295   brain-derived neurotrophic factor isoform b prepropr...
NTF4                  0.285   neurotrophin 5 preproprotein 
BMP2K                 0.014   BMP-2 inducible kinase isoform a 
CSMD3                 0.014   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.014   CUB and Sushi multiple domains 3 isoform 1 
COBL                  0.010   cordon-bleu homolog 
KIAA0355              0.010   hypothetical protein LOC9710 
LOC644006             0.008   PREDICTED: hypothetical LOC644006 
ZNF573                0.008   zinc finger protein 573 
ABCA13                0.006   ATP binding cassette, sub-family A (ABC1), member 13...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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