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Search of human proteins with 4505123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505123 myelin basic protein isoform 2 [Homo sapiens] 394 e-110
gi|68509930 myelin basic protein isoform 1 [Homo sapiens] 386 e-108
gi|68509932 myelin basic protein isoform 4 [Homo sapiens] 322 9e-89
gi|68509940 Golli-mbp isoform 1 [Homo sapiens] 314 3e-86
gi|68509928 myelin basic protein isoform 3 [Homo sapiens] 314 3e-86
gi|68509938 Golli-mbp isoform 2 [Homo sapiens] 127 6e-30
gi|223633988 hypothetical protein LOC85379 [Homo sapiens] 35 0.049
gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo ... 35 0.049
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 35 0.049
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 35 0.049
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 35 0.049
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 35 0.049
gi|169216272 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|169216572 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens] 33 0.18
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens] 33 0.18
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 31 0.70
gi|57864582 hornerin [Homo sapiens] 30 0.92
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 30 0.92
gi|239754450 PREDICTED: hypothetical protein [Homo sapiens] 30 0.92
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 30 0.92
gi|239748999 PREDICTED: hypothetical protein [Homo sapiens] 30 0.92
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 30 0.92
gi|21618325 forkhead box E1 [Homo sapiens] 30 0.92
gi|7662018 PHD finger protein 3 [Homo sapiens] 30 0.92
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 1.2
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 1.2
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 1.6
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 1.6
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 1.6
>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
Length = 186
Score = 394 bits (1013), Expect = e-110
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 121 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 180
VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG
Sbjct: 121 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 180
Query: 181 SPMARR 186
SPMARR
Sbjct: 181 SPMARR 186
>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
Length = 197
Score = 386 bits (991), Expect = e-108
Identities = 186/197 (94%), Positives = 186/197 (94%), Gaps = 11/197 (5%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 121 VTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169
VTPRTPPPSQGK GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
Query: 170 FKLGGRDSRSGSPMARR 186
FKLGGRDSRSGSPMARR
Sbjct: 181 FKLGGRDSRSGSPMARR 197
>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
Length = 160
Score = 322 bits (826), Expect = 9e-89
Identities = 160/186 (86%), Positives = 160/186 (86%), Gaps = 26/186 (13%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
Query: 121 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 180
VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG
Sbjct: 95 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 154
Query: 181 SPMARR 186
SPMARR
Sbjct: 155 SPMARR 160
>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
Length = 304
Score = 314 bits (804), Expect = 3e-86
Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 192
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 193 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 227
Query: 121 VTPRTPPPSQGKG-----------AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169
VTPRTPPPSQGKG AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 228 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 287
Query: 170 FKLGGRDSRSGSPMARR 186
FKLGGRDSRSGSPMARR
Sbjct: 288 FKLGGRDSRSGSPMARR 304
>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
Length = 171
Score = 314 bits (804), Expect = 3e-86
Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
Query: 121 VTPRTPPPSQGKG-----------AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169
VTPRTPPPSQGKG AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 95 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 154
Query: 170 FKLGGRDSRSGSPMARR 186
FKLGGRDSRSGSPMARR
Sbjct: 155 FKLGGRDSRSGSPMARR 171
>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
Length = 197
Score = 127 bits (319), Expect = 6e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
>gi|223633988 hypothetical protein LOC85379 [Homo sapiens]
Length = 1806
Score = 34.7 bits (78), Expect = 0.049
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 65 PGRSPLPSHARSQPGLCN----MYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PG SP+P+ R + G + HH A+ +Y L + +D V
Sbjct: 1309 PGGSPIPADPRKKTGFAEDDRKAFASKHHVAKCQNY--LAESKPSGREDPGSGVR----- 1361
Query: 121 VTPRTPPPSQGKGAEGQRPGFG 142
V+P++PP Q KG + G G
Sbjct: 1362 VSPKSPPTDQKKGTPRKSTGRG 1383
>gi|239747180 PREDICTED: hypothetical protein XP_002343933 [Homo
sapiens]
Length = 1595
Score = 34.7 bits (78), Expect = 0.049
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 65 PGRSPLPSHARSQPGLCN----MYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
PG SP+P+ R + G + HH A+ +Y L + +D V
Sbjct: 1309 PGGSPIPADPRKKTGFAEDDRKAFASKHHVAKCQNY--LAESKPSGREDPGSGVR----- 1361
Query: 121 VTPRTPPPSQGKGAEGQRPGFG 142
V+P++PP Q KG + G G
Sbjct: 1362 VSPKSPPTDQKKGTPRKSTGRG 1383
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 34.7 bits (78), Expect = 0.049
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 123 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 161
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 342 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 380
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 34.7 bits (78), Expect = 0.049
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 123 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 161
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 443 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 481
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 34.7 bits (78), Expect = 0.049
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 123 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 161
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 339 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 377
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 34.7 bits (78), Expect = 0.049
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 123 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 161
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 440 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 478
>gi|169216272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 44 RFFGGDRGAPKRGSGKVP---WLKP---GRSPLPSHARSQP-----GLCNMY----KDSH 88
R F G R + + +VP W+ G +PL H+ SQ G N Y
Sbjct: 54 RTFRGQRTSETPSTMRVPSPSWIPSTSWGPTPLTGHSNSQVCSSSHGWNNSYDCCTSQGQ 113
Query: 89 HPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQG 131
R +P S G E P + + ++ T TP PSQG
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|169216572 PREDICTED: hypothetical protein [Homo sapiens]
Length = 753
Score = 33.5 bits (75), Expect = 0.11
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 44 RFFGGDRGAPKRGSGKVP---WLKP---GRSPLPSHARSQP-----GLCNMY----KDSH 88
R F G R + + +VP W+ G +PL H+ SQ G N Y
Sbjct: 54 RTFRGQRTSETPSTMRVPSPSWIPSTSWGPTPLTGHSNSQVCSSSHGWNNSYDCCTSQGQ 113
Query: 89 HPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQG 131
R +P S G E P + + ++ T TP PSQG
Sbjct: 114 STPRRPSVSEIPSTSQGLGASETPNTNTYWDLSTLETPSPSQG 156
>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
Length = 720
Score = 32.7 bits (73), Expect = 0.18
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 65 PGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLP--QKSHGRTQDENPVVHFFKNIVT 122
P + L SH+R + GL HH G P Q++ Q N +VHF N T
Sbjct: 47 PVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHFQANEDT 106
Query: 123 PRTPP 127
P++ P
Sbjct: 107 PKSVP 111
>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
Length = 718
Score = 32.7 bits (73), Expect = 0.18
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 65 PGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLP--QKSHGRTQDENPVVHFFKNIVT 122
P + L SH+R + GL HH G P Q++ Q N +VHF N T
Sbjct: 47 PVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHFQANEDT 106
Query: 123 PRTPP 127
P++ P
Sbjct: 107 PKSVP 111
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 30.8 bits (68), Expect = 0.70
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 62 WLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQK----------SHGRTQDEN 111
W R P PS AR PG ++ DSH R G P + +HG
Sbjct: 28 WATGHRDP-PSRARGPPGRPSLRSDSHPTQRARRAGEGPARARLEAERAGCAHGPGAPAR 86
Query: 112 PVVHFFKN------IVTPRTPPPSQGKGAEGQR 138
H K ++ RT GKG E +R
Sbjct: 87 TRAHAHKGRGAGKLVIQARTRAQKGGKGEETRR 119
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 30.4 bits (67), Expect = 0.92
Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 6/149 (4%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKVPW 62
S R S HG + + + H RHG H + G + RG + GSG+
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSG 347
Query: 63 L---KPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKN 119
+ G +++ G + H + + S Q Q + H
Sbjct: 348 FGQHESGSGQSSGYSKHGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYGQH---E 404
Query: 120 IVTPRTPPPSQGKGAEGQRPGFGYGGRAS 148
+ + Q GQ PG G G S
Sbjct: 405 SASRHSSGRGQHSSGSGQSPGHGQRGSGS 433
Score = 29.3 bits (64), Expect = 2.0
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 41/153 (26%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + RHG +G S G+ G R G + GSG
Sbjct: 1428 EQHGSR---SGQSSRGERHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 1473
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + + YGS S R E+ H
Sbjct: 1474 GQSPSPSRGRHGSG-------SGQSSSYSPYGSGSGWSSSRGPYESGSSH---------- 1516
Query: 126 PPPSQGKG----AEGQRPGFGYGGRASDYKSAH 154
S G G GQ G+G G +S + S H
Sbjct: 1517 ---SSGLGHRESRSGQSSGYGQHGSSSGHSSTH 1546
Score = 28.9 bits (63), Expect = 2.7
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 41/153 (26%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + RHG +G S G+ G R G + GSG
Sbjct: 2368 EQHGSR---SGQSSRGERHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 2413
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + + YGS S R E+ H
Sbjct: 2414 GQSPSPSRGRHGSG-------SGQSSSYSPYGSGSGWSSSRGPYESGSGH---------- 2456
Query: 126 PPPSQGKG----AEGQRPGFGYGGRASDYKSAH 154
S G G GQ G+G G +S + S H
Sbjct: 2457 ---SSGLGHRESRSGQSSGYGQHGSSSGHSSTH 2486
Score = 28.1 bits (61), Expect = 4.6
Identities = 40/162 (24%), Positives = 56/162 (34%), Gaps = 37/162 (22%)
Query: 8 SQRHGSKYLATAS----TMDHARHGFLP--------RHRDTGILDSIGRFFGGDR---GA 52
S H S Y S + H +HG + G S G+ G R G
Sbjct: 471 SSEHSSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGH 530
Query: 53 PKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENP 112
+ GSG G+SP PS R + G + S+ P YGS GR+ P
Sbjct: 531 SRHGSGS------GQSPSPSRGRHESG--SRQSSSYGPHG---YGS------GRSSSRGP 573
Query: 113 VVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAH 154
+ + + GQ G+G G +S + S H
Sbjct: 574 Y-----ESGSGHSSGLGHQESRSGQSSGYGQHGSSSGHSSTH 610
Score = 28.1 bits (61), Expect = 4.6
Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 43/180 (23%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDR---GAPKRGSGKVPWLKP 65
++HGS+ + + +HG +G S G+ G R G + GSG
Sbjct: 1898 EQHGSR---SGQSSRGEQHG-----SSSGSSSSYGQHGSGSRQSLGHGQHGSGS------ 1943
Query: 66 GRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT 125
G+SP PS R G S + YGS S R E+ H
Sbjct: 1944 GQSPSPSRGRHGSG-------SGQSSSYGPYGSGSGWSSSRGPYESGSGH---------- 1986
Query: 126 PPPSQGKG----AEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGS 181
S G G GQ G+G G +S + S H G G A G S + G +S S
Sbjct: 1987 ---SSGLGHRESRSGQSSGYGQHGSSSGHSSTH-GQHG-SASGQSSSCGQHGASSGQSSS 2041
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|239754450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.92
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 35 DTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTA 94
D G+L GR R +G L P + LP R +P C + + P R
Sbjct: 56 DPGLLPKWGREQAASRETGWKG------LSPTTASLPL-LRGRP--CFLLRGCSTPRRAL 106
Query: 95 HYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAH 154
H LP + H R P +++ P P QG A G GG S +
Sbjct: 107 H--ELPSRKHLRVPQFTPC-----SLLKPFLPVSPQG--AHGVSSASAPGGGLSSSGACP 157
Query: 155 KGFKGVDAQ 163
+G++GV Q
Sbjct: 158 RGYQGVRHQ 166
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|239748999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.92
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 35 DTGILDSIGRFFGGDRGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTA 94
D G+L GR R +G L P + LP R +P C + + P R
Sbjct: 56 DPGLLPKWGREQAASRETGWKG------LSPTTASLPL-LRGRP--CFLLRGCSTPRRAL 106
Query: 95 HYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAH 154
H LP + H R P +++ P P QG A G GG S +
Sbjct: 107 H--ELPSRKHLRVPQFTPC-----SLLKPFLPVSPQG--AHGVSSASAPGGGLSSSGACP 157
Query: 155 KGFKGVDAQ 163
+G++GV Q
Sbjct: 158 RGYQGVRHQ 166
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 30.4 bits (67), Expect = 0.92
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 50 RGAPKRGSGKVPWLKPGRSPLPSHARSQPGLCNMYKDSHH-PARTAHYGSLPQKSHGR 106
R P R G PW+ PG SP A PG SH P TA +HGR
Sbjct: 31 RADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASGHAHGR 87
>gi|21618325 forkhead box E1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 0.92
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 117 FKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRD 176
F + P T Q G G RP S Y +A+ G G QG S IF GR
Sbjct: 249 FASAGAPATTTGYQPAGCTGARPA-----NPSAYAAAYAGPDGAYPQGAGSAIFAAAGRL 303
Query: 177 SRSGSPMA 184
+ SP A
Sbjct: 304 AGPASPPA 311
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 64 KPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVV 114
KP L + + PG K+ HHPA+T H QK + Q + P +
Sbjct: 590 KPLTHSLSDKSHAHPGCL---KEPHHPAQTGHVSHSSQKQCHKPQQQAPAM 637
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 30.0 bits (66), Expect = 1.2
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 49 DRGAPKRGSGKVPWLKPGRSPL--PSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHG- 105
DR P + +G P PGR P S+ + + +DS + G + G
Sbjct: 208 DRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGL 267
Query: 106 ----RTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYK 151
Q P ++ +P P P Q G RPG G GR D K
Sbjct: 268 RRANSVQASRPAPG---SVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQK 314
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 30.0 bits (66), Expect = 1.2
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 49 DRGAPKRGSGKVPWLKPGRSPL--PSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHG- 105
DR P + +G P PGR P S+ + + +DS + G + G
Sbjct: 204 DRRGPGQKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGL 263
Query: 106 ----RTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYK 151
Q P ++ +P P P Q G RPG G GR D K
Sbjct: 264 RRANSVQASRPAPG---SVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQK 310
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 133 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 185
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 133 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 185
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 133 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 185
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,244,399
Number of Sequences: 37866
Number of extensions: 525800
Number of successful extensions: 1702
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1648
Number of HSP's gapped (non-prelim): 93
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.