Guide to the Human Genome
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Name: LOC728275 Sequence: fasta or formatted (186aa) NCBI GI: 239754450
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         14           2
 C cysteine            4.3          8           2
 D aspartate           2.2          4           1
 E glutamate           3.8          7           2
 F phenylalanine       2.2          4           1
 G glycine            11.3         21           3
 H histidine           3.8          7           2
 I isoleucine          1.6          3           1
 K lysine              3.2          6           1
 L leucine            10.8         20           2
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            12.9         24           2
 Q glutamine           4.3          8           1
 R arginine            8.1         15           2
 S serine             10.8         20           3
 T threonine           5.9         11           3
 V valine              3.2          6           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728275             1.000   PREDICTED: hypothetical protein 
LOC100292566          0.035   PREDICTED: hypothetical protein 
LOC100291188          0.035   PREDICTED: hypothetical protein XP_002348260 
LOC100287511          0.035   PREDICTED: hypothetical protein XP_002342250 
FOXE3                 0.024   forkhead box E3 
KLF14                 0.024   Kruppel-like factor 14 
TAF6L                 0.022   TAF6-like RNA polymerase II 
REXO1                 0.022   transcription elongation factor B polypeptide 3 bin...
LOC100133885          0.022   PREDICTED: hypothetical protein 
LPIN3                 0.022   lipin 3 
MTSS1L                0.019   metastasis suppressor 1-like 
COL1A2                0.019   alpha 2 type I collagen 
LOC100292401          0.019   PREDICTED: hypothetical protein 
LOC100290692          0.019   PREDICTED: hypothetical protein XP_002348066 
LOC100287031          0.019   PREDICTED: hypothetical protein XP_002343746 
ACAN                  0.019   aggrecan isoform 2 precursor 
ACAN                  0.019   aggrecan isoform 1 precursor 
CABIN1                0.019   calcineurin binding protein 1 
GORASP2               0.016   golgi reassembly stacking protein 2 
FBRSL1                0.016   fibrosin-like 1 
EML3                  0.016   echinoderm microtubule associated protein like 3 [H...
WDR90                 0.016   WD repeat domain 90 
LOC643355             0.013   PREDICTED: hypothetical protein 
LOC643355             0.013   PREDICTED: hypothetical protein 
MBP                   0.013   myelin basic protein isoform 2 
SALL1                 0.013   sal-like 1 isoform b 
SALL1                 0.013   sal-like 1 isoform a 
MRVI1                 0.013   JAW1-related protein isoform a 
ARHGAP22              0.013   Rho GTPase activating protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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