Guide to the Human Genome
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Name: LOXL2 Sequence: fasta or formatted (774aa) NCBI GI: 4505011
Description:

lysyl oxidase-like 2 precursor

Referenced in:

Additional Membrane Functions
Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         46           2
 C cysteine            4.8         37           1
 D aspartate           5.2         40           3
 E glutamate           6.8         53           2
 F phenylalanine       3.2         25           1
 G glycine             9.0         70           2
 H histidine           3.5         27           1
 I isoleucine          3.7         29           2
 K lysine              4.8         37           2
 L leucine             6.6         51           2
 M methionine          2.6         20           1
 N asparagine          5.3         41           2
 P proline             4.3         33           2
 Q glutamine           4.7         36           2
 R arginine            5.2         40           2
 S serine              6.6         51           3
 T threonine           4.4         34           2
 V valine              7.4         57           2
 W tryptophan          2.5         19           1
 Y tyrosine            3.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysyl oxidase-like 2 precursor 
LOXL3                 0.542   lysyl oxidase-like 3 precursor 
LOXL4                 0.522   lysyl oxidase-like 4 precursor 
DMBT1                 0.149   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.146   deleted in malignant brain tumors 1 isoform c precu...
LOC100291777          0.143   PREDICTED: similar to DMBT1 isoform 1 
DMBT1                 0.143   deleted in malignant brain tumors 1 isoform a precu...
LOC100291777          0.142   PREDICTED: similar to DMBT1 isoform 2 
SRCRB4D               0.123   scavenger receptor cysteine rich domain containing, ...
LOX                   0.120   lysyl oxidase preproprotein 
LOXL1                 0.117   lysyl oxidase-like 1 preproprotein 
CD163                 0.116   CD163 antigen isoform b 
CD163                 0.116   CD163 antigen isoform a 
PRSS12                0.114   neurotrypsin precursor 
CD163L1               0.111   scavenger receptor cysteine-rich type 1 precursor [H...
LOC284297             0.091   hypothetical protein LOC284297 
CD5L                  0.084   CD5 molecule-like 
LOC651581             0.081   PREDICTED: hypothetical protein 
CD6                   0.065   CD6 molecule 
LGALS3BP              0.053   galectin 3 binding protein 
MARCO                 0.050   macrophage receptor with collagenous structure 
MSR1                  0.050   macrophage scavenger receptor 1 isoform type 1 [Homo...
SCARA5                0.047   scavenger receptor class A, member 5 
HHIPL1                0.045   HHIP-like protein 1 isoform a 
MSR1                  0.016   macrophage scavenger receptor 1 isoform type 3 [Homo...
CFI                   0.011   complement factor I preproprotein 
TMPRSS3               0.006   transmembrane protease, serine 3 isoform 1 
TMPRSS3               0.006   transmembrane protease, serine 3 isoform 3 
CD5                   0.006   CD5 molecule 
PRSS7                 0.005   enterokinase precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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