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Search of human proteins with 4504445
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 668 0.0
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 645 0.0
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 645 0.0
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 644 0.0
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 573 e-164
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 573 e-164
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 571 e-163
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 466 e-132
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 425 e-119
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 425 e-119
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 301 4e-82
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 202 2e-52
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 199 2e-51
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 192 3e-49
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 192 4e-49
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 177 8e-45
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 175 4e-44
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 172 4e-43
gi|20373175 musashi 2 isoform a [Homo sapiens] 163 2e-40
gi|4505255 musashi 1 [Homo sapiens] 160 1e-39
gi|25121993 musashi 2 isoform b [Homo sapiens] 155 6e-38
gi|239747524 PREDICTED: similar to serum response factor-related... 149 2e-36
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 142 3e-34
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 142 3e-34
gi|6678271 TAR DNA binding protein [Homo sapiens] 119 5e-27
gi|55956788 nucleolin [Homo sapiens] 102 3e-22
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 102 6e-22
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 100 3e-21
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 99 4e-21
gi|55956899 keratin 9 [Homo sapiens] 94 2e-19
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 668 bits (1724), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYGGSSSSSSYGSGRRF
Sbjct: 301 NQGGYGGSSSSSSYGSGRRF 320
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 645 bits (1664), Expect = 0.0
Identities = 310/320 (96%), Positives = 311/320 (97%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 645 bits (1664), Expect = 0.0
Identities = 310/320 (96%), Positives = 311/320 (97%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
L KQEMASASSSQRGR GSGNFGGGRG GFGGNDNFGRGGNFSGRGGFGGS GGGGYGGS
Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKP+
Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYG SSSSSSYGSGRRF
Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 644 bits (1661), Expect = 0.0
Identities = 320/372 (86%), Positives = 320/372 (86%), Gaps = 52/372 (13%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS
Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 241 GDGYNGFGND-------------------------------------------------- 250
GDGYNGFGND
Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300
Query: 251 --GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 308
GSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS
Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360
Query: 309 SSSSSYGSGRRF 320
SSSSSYGSGRRF
Sbjct: 361 SSSSSYGSGRRF 372
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 573 bits (1478), Expect = e-164
Identities = 279/320 (87%), Positives = 291/320 (90%), Gaps = 5/320 (1%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYGGSSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 573 bits (1478), Expect = e-164
Identities = 279/320 (87%), Positives = 291/320 (90%), Gaps = 5/320 (1%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GGFGGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYGGSSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 571 bits (1472), Expect = e-163
Identities = 278/320 (86%), Positives = 290/320 (90%), Gaps = 5/320 (1%)
Query: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV
Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60
Query: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH
Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120
Query: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180
Query: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GG GGS +GGS
Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300
DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+
Sbjct: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295
Query: 301 NQGGYGGSSSSSSYGSGRRF 320
NQGGYGGSSSSSSYGSGRRF
Sbjct: 296 NQGGYGGSSSSSSYGSGRRF 315
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 466 bits (1200), Expect = e-132
Identities = 249/370 (67%), Positives = 268/370 (72%), Gaps = 67/370 (18%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 183 KQEMASASSSQRGR-SGSGNFGGGRGGGF-GGNDNFGRGGNFSGRGGFGGSRGG--GGYG 238
KQEM SA SQRGR GSGNF GRGG F GG NFGRGGNF GRGG+GG GG G YG
Sbjct: 204 KQEMQSA-GSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYG 261
Query: 239 GSGDGYNGFGND----------------------------------------------GS 252
G GYNGFG D G
Sbjct: 262 GGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGG 321
Query: 253 NFGGGGSYNDFGNYN-NQSSNFGPMKGGNFGGRSSG-PYGGGGQYFAKPRNQGGYGGSSS 310
N+GGGG+YNDFGNY+ Q SN+GPMKGG+FGGRSSG PYG GGYG
Sbjct: 322 NYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYG------------GGYGSGGG 369
Query: 311 SSSYGSGRRF 320
S YGS RRF
Sbjct: 370 SGGYGS-RRF 378
Score = 70.9 bits (172), Expect = 1e-12
Identities = 68/265 (25%), Positives = 114/265 (43%), Gaps = 32/265 (12%)
Query: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++ +
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLT 124
Query: 195 GRSGSGNFGGG---RGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG 251
+ F GG + D F + G + G G + ++ +D
Sbjct: 125 VKK---IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD--DHDT 179
Query: 252 SNFGGGGSYNDFGNYN---------NQSSNFGPMKG-----GNFGGRSSGPYGGGGQYFA 297
+ Y+ +N + + G +G GNF GR G +GGGG F
Sbjct: 180 VDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGR-GGNFGGGGGNFG 238
Query: 298 KPRN---QGGYGGSSSSS--SYGSG 317
+ N +GGYGG S SYG G
Sbjct: 239 RGGNFGGRGGYGGGGGGSRGSYGGG 263
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 425 bits (1092), Expect = e-119
Identities = 215/337 (63%), Positives = 245/337 (72%), Gaps = 35/337 (10%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
Query: 188 SASSSQRGRSGSGNFGGGRGGG-----------FGGNDNFGRGGNFS----------GRG 226
SS+ GR G+ FG RGGG GG+D +G G F G G
Sbjct: 195 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 254
Query: 227 GFGGSRG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
FGGS G GGG GG G G G+GN G +GGG G+YNDFGNYN Q SN+G
Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314
Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 309
PMK GNFGG GPYGGG GGYGG S
Sbjct: 315 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 66.2 bits (160), Expect = 4e-11
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
+ VD + + H ++G E ++A+SR++ Q
Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 425 bits (1092), Expect = e-119
Identities = 215/337 (63%), Positives = 245/337 (72%), Gaps = 35/337 (10%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 188 SASSSQRGRSGSGNFGGGRGGG-----------FGGNDNFGRGGNFS----------GRG 226
SS+ GR G+ FG RGGG GG+D +G G F G G
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242
Query: 227 GFGGSRG-GGGYGGSGDGYNGFGNDGSNFGGG-----------GSYNDFGNYNNQSSNFG 274
FGGS G GGG GG G G G+GN G +GGG G+YNDFGNYN Q SN+G
Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
Query: 275 PMKGGNFGG--RSSGPYGGGGQYFAKPRNQGGYGGSS 309
PMK GNFGG GPYGGG GGYGG S
Sbjct: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
Score = 66.2 bits (160), Expect = 4e-11
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
+S P ++KLF+GG+ +T + LR +FE++G + ++ D + + RGFGFVT+
Sbjct: 89 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 96
+ VD + + H ++G E ++A+SR++ Q
Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 301 bits (772), Expect = 4e-82
Identities = 159/306 (51%), Positives = 197/306 (64%), Gaps = 8/306 (2%)
Query: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 69 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 129 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++ S
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181
Query: 189 ASSSQRGRSGSGNFGG-GRGGGFGGND-NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNG 246
RS G GG GRGGG N + G GG ++ GG+GG GGGGY G G G
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGG-GGGGYNAYGGGGGG 240
Query: 247 FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG---GGQYFAKPRNQG 303
GS++G G + FG+Y+ S++GPMK G GG +GG G Y G
Sbjct: 241 SSYGGSDYGNG--FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGG 298
Query: 304 GYGGSS 309
GYGGSS
Sbjct: 299 GYGGSS 304
Score = 87.8 bits (216), Expect = 1e-17
Identities = 72/268 (26%), Positives = 107/268 (39%), Gaps = 66/268 (24%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
S P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
+ D A + H + G VE K+AV +ED G GG + R
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGG--------GGSRSSRGGRGGR- 198
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
RG G+ D + + K Y++ G+
Sbjct: 199 ---------------GRGGGR----------DQNGLSKGGGGGYNSYGGY---------- 223
Query: 184 QEMASASSSQRGRSGSGNF----GGGRGGGFGGND---NFGRGGNFS-GRGGFGGSRGGG 235
G G G + GGG G +GG+D FG G++S + +G + GG
Sbjct: 224 -----------GGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272
Query: 236 GYGGSGDGYNGFGNDG---SNFGGGGSY 260
G GG G + G N G +GGGG Y
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGGGY 300
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 202 bits (515), Expect = 2e-52
Identities = 109/289 (37%), Positives = 169/289 (58%), Gaps = 19/289 (6%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRGGGGYGGS 240
SK++ Q+ S G G RG G G + N+ +G N+ ++G G YG +
Sbjct: 240 SKEQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY-------WNQGYGNYGYN 289
Query: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 290 SQGYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 199 bits (507), Expect = 2e-51
Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 19/287 (6%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRGGGGYGGSGD 242
++ Q+ S G G RG G G + N+ +G N+ ++G G YG +
Sbjct: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY-------WNQGYGNYGYNSQ 310
Query: 243 GYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 311 GYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
Score = 59.3 bits (142), Expect = 4e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V M + H V E K A+S+E Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 192 bits (488), Expect = 3e-49
Identities = 99/290 (34%), Positives = 155/290 (53%), Gaps = 10/290 (3%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
SK + K + K+FIGGLS++T+ + L + ++G + DC + DP T RSRGFGFV
Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ VD + + HK+DG++++PKRA + + + P KK+FVGG+ DT E +
Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
++YF +G+IE IE+ D + ++RGF F+T+ D + V K++ +YH + CE++ A
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309
Query: 182 SKQEMASASSSQRGRSG--SGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG 239
K+ Q+G G +G GG RG G G N+ +G N G+G G
Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369
Query: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
+ GY G+ G N+G G + +Y+ Q S +G K GG Y
Sbjct: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYG--KASRGGGNHQNNY 417
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 192 bits (487), Expect = 4e-49
Identities = 102/276 (36%), Positives = 161/276 (58%), Gaps = 16/276 (5%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQ--E 185
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K+ +
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGG-NDNFGRG-GNFSGRGGFGGSRG-GGGYGG--- 239
S RG GN G G GGG GG + ++ +G GN+ + G+G +G G GYGG
Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQ-GYGYQQGYGPGYGGYDY 295
Query: 240 SGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
S GY G+G G +Y +N+ P
Sbjct: 296 SPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V + + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 177 bits (450), Expect = 8e-45
Identities = 87/223 (39%), Positives = 137/223 (61%), Gaps = 17/223 (7%)
Query: 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 67
K E K+F+GGLS++T+ + L+ +F ++G + DC + DPNT RSRGFGF+ +
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
V+ ++ + H++DGRV++PK+A++ + VKKIFVGG+ + E +R+YF +
Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176
Query: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK---- 183
+G+IE IE+ D K+RGF F+TF + + V K++ +K+HTV+G CE++ A K
Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 184 -QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFG----RGGN 221
Q+ S R R G+ GGG GGG G+ N+G RGG+
Sbjct: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYGKSQRRGGH 278
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + + ++K+F+GGL+ E T+E +R +F ++G + + DP + RGF F+T+
Sbjct: 143 KKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITF 202
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V + + H V G E K A +E Q+
Sbjct: 203 KEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ 237
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 175 bits (444), Expect = 4e-44
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 12/230 (5%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
SK++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 172 bits (436), Expect = 4e-43
Identities = 92/228 (40%), Positives = 137/228 (60%), Gaps = 12/228 (5%)
Query: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
Query: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Query: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 302
Score = 59.3 bits (142), Expect = 4e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
Query: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
E V M + H V E K A+S+E Q+
Sbjct: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 163 bits (412), Expect = 2e-40
Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 37/315 (11%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
S ++S +P K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT
Sbjct: 12 SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+A VD + H++D + ++PK A R +P KKIFVGG+ +T +
Sbjct: 69 FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
+ YFEQ+GK+E +M D+ + + RGF FVTF++ D V+K+ +H +N E +KA
Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
Query: 182 SKQEMASASSSQRGRS---------------GSGNFGGGRGGGFGGNDNFGRGGNFSG-- 224
K+ M + R R G NF G G+ G G F G
Sbjct: 187 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAP-SYGYQFPGFP 245
Query: 225 --------RGGFGGSRGGGGYGGSGDGYNGFGNDG---SNFGGGGSYNDFGNYNNQSSNF 273
+RG G G+ G + G +G + GNY + +S
Sbjct: 246 AAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAAS-- 303
Query: 274 GPMKGGNFGGRSSGP 288
P G FG +GP
Sbjct: 304 -PQPGSGFGHGIAGP 317
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 160 bits (405), Expect = 1e-39
Identities = 94/240 (39%), Positives = 131/240 (54%), Gaps = 13/240 (5%)
Query: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65
SP P K+FIGGLS++TT E LR +F Q+G + +C+VMRDP TKRSRGFGFVT+
Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71
Query: 66 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125
VD + H++D + ++PK A R +P KKIFVGG+ +T ++ YF
Sbjct: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129
Query: 126 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 185
EQ+GK++ +M D+ + + RGF FVTF+ D V+K+ +H +N E +KA K E
Sbjct: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPK-E 188
Query: 186 MASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSR-GGGGYGGSGDGY 244
+ S + S RGRS + G D F G G GF + Y G GY
Sbjct: 189 VMSPTGSARGRSRVMPY---------GMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY 239
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 155 bits (391), Expect = 6e-38
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A VD +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
H++D + ++PK A R +P KKIFVGG+ +T ++ YFEQ+GK+E
Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135
Query: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194
+M D+ + + RGF FVTF++ D V+K+ +H +N E +KA K+ M + R
Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195
Query: 195 GR 196
R
Sbjct: 196 AR 197
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 66
PK + +K+F+GGLS T E ++ +FEQ+G + D ++M D T R RGFGFVT+ +
Sbjct: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Query: 67 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPG 99
V+ H+++ ++VE K+A +E PG
Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 149 bits (377), Expect = 2e-36
Identities = 80/131 (61%), Positives = 86/131 (65%), Gaps = 24/131 (18%)
Query: 205 GRGGGFGGNDNFGRGGNFSGRG-GF-GGSRG----GGGYGGSGDGYNGFGN--------- 249
GRG G+ G FG G + G G G+ GGSRG G GYG G GY G G+
Sbjct: 46 GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
Query: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG 303
GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KP+NQG
Sbjct: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162
Query: 304 GYGGSSSSSSY 314
GYGGSSSS Y
Sbjct: 163 GYGGSSSSRHY 173
Score = 62.4 bits (150), Expect = 5e-10
Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 239 GSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK 298
G GDGYNGFGNDG +GGGG Y+ S +G + G +G + SG YGG G Y +
Sbjct: 46 GRGDGYNGFGNDGG-YGGGGP-----GYSGGSRGYGSV-GQGYGSQGSG-YGGSGSYNSY 97
Query: 299 PRNQGG-YGGSSSSSSYGSG 317
GG +GG S SS GSG
Sbjct: 98 NNGGGGSFGGGSGSSFGGSG 117
Score = 35.8 bits (81), Expect = 0.052
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 1 MSKSESPKEPEQLRKLFIG 19
+S SESPKEP+QLRKLF+G
Sbjct: 28 LSNSESPKEPKQLRKLFLG 46
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 142 bits (359), Expect = 3e-34
Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALSKQEMASASSSQRGRSGSGNFG 203
+A E + S G+ G+ +G
Sbjct: 187 RA----EPRDSKSQAPGQPGASQWG 207
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 142 bits (359), Expect = 3e-34
Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 179 KALSKQEMASASSSQRGRSGSGNFG 203
+A E + S G+ G+ +G
Sbjct: 187 RA----EPRDSKSQAPGQPGASQWG 207
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 119 bits (297), Expect = 5e-27
Identities = 99/324 (30%), Positives = 144/324 (44%), Gaps = 51/324 (15%)
Query: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
L + GL ++TT++ L+ +F +G + V +D T S+GFGFV + E M+ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
H +DGR + K S++ P L +K+FVG ED E LR++F QYG +V++
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219
Query: 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRG 195
+ + R FAFVTF D D + + + + + G + + A K +S R
Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269
Query: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFG 255
SG FGG GG F +GGFG SRGGG G+ G N G G NFG
Sbjct: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGAGLGNNQGSNMGG--GMNFG 314
Query: 256 G---------------GGSYNDFGNYNNQSSNFGP----MKGGNFGGRSSGPYGGGGQYF 296
S+ G +Q + GP GN + +G G +
Sbjct: 315 AFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSY 374
Query: 297 AKPRNQGGYGGSSSSSSYGSGRRF 320
+ N G G S+S+ GSG F
Sbjct: 375 S-GSNSGAAIGWGSASNAGSGSGF 397
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/263 (22%), Positives = 101/263 (38%), Gaps = 35/263 (13%)
Query: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
+ +S EP + RK+F+G + + T++ LR F Q+G + D + K R F FVT
Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233
Query: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
+A +++ ++ + G V A + +S R GG +
Sbjct: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNS 292
Query: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
R G ++GS G F F + ++ + ++ +
Sbjct: 293 RGGGAGLG--------NNQGSNMGGGMNFGAFSINPAM----------MAAAQAALQSSW 334
Query: 182 SKQEMASASSSQRGRSGS----GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGY 237
M ++ +Q G SG+ GN FG +N G N G+G +
Sbjct: 335 GMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNNSYSGSNSGAAIGWGSASN---- 390
Query: 238 GGSGDGYN-GFGN--DGSNFGGG 257
GSG G+N GFG+ D + G G
Sbjct: 391 AGSGSGFNGGFGSSMDSKSSGWG 413
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 102 bits (255), Expect = 3e-22
Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 38/254 (14%)
Query: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
+ L + LS+ T+E+L+ FE+ T V ++ N K S+G+ F+ +A+ E+ A+N
Sbjct: 486 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGK-SKGYAFIEFASFEDAKEALN 541
Query: 74 A-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKK-IFVGGIKEDTEEHHLRDYFEQYGKI 131
+ +++GR + + R P A K +FV G+ EDT E L++ F+ G +
Sbjct: 542 SCNKREIEGRAIRLELQGPRGS---PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV 596
Query: 132 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 190
I+TDR +G +GF FV F+ + D+ + ++G+ + A K
Sbjct: 597 RA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK------- 648
Query: 191 SSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND 250
G G G GGGR GGFG GRGG GRGGFGG RG GG+GG G G+ G
Sbjct: 649 ----GEGGFGGRGGGR-GGFG-----GRGGGRGGRGGFGG-RGRGGFGGRG-GFRG---- 692
Query: 251 GSNFGGGGSYNDFG 264
GGGG + G
Sbjct: 693 --GRGGGGDHKPQG 704
Score = 43.5 bits (101), Expect = 2e-04
Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 26/324 (8%)
Query: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
K + K+ R L L ++ T + L+ FE + +V +D +S+G ++ +
Sbjct: 382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDG---KSKGIAYIEF 436
Query: 63 ATVEEVDAAMNARPH-KVDGRVVEPKRAVSREDSQ--RPGAHLT----VKKIFVGGIKED 115
T + + + ++DGR + + +Q R G + T K + + +
Sbjct: 437 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYS 496
Query: 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 175
E L++ FE+ I+V + +GK +G+AF+ F + + + ++ N
Sbjct: 497 ATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAKEAL----NSCNKREI 548
Query: 176 EVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGG 235
E R + + S + R + F G + + S R R G
Sbjct: 549 EGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTT-EETLKESFDGSVRARIVTDRETG 607
Query: 236 GYGGSGDGYNGFGNDGSNFGGGGSYNDFG-NYNNQSSNFGPMKG-GNFGGRSSGPYGGGG 293
G G+ F ++ + D + N + ++ KG G FGGR G G GG
Sbjct: 608 S--SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGG 665
Query: 294 QYFAKPRNQGGYGGSSSSSSYGSG 317
+ + +GG+GG G G
Sbjct: 666 RGGGRG-GRGGFGGRGRGGFGGRG 688
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 102 bits (253), Expect = 6e-22
Identities = 83/291 (28%), Positives = 116/291 (39%), Gaps = 70/291 (24%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 218 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 277
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GR G
Sbjct: 278 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 334
Query: 200 GNFGG-----GRGG---------------------------------------------- 208
G + G GRGG
Sbjct: 335 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 394
Query: 209 GFGGNDNF-GRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYN 267
G+GG + GRGG RGG+GG R GGGYGG G+ D S G GG + G
Sbjct: 395 GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGG 454
Query: 268 NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
++ +G +GG +GG G YGG + R GGYGG YG R
Sbjct: 455 DRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRG-GGYGG--DRGGYGGDR 502
Score = 92.0 bits (227), Expect = 6e-19
Identities = 56/135 (41%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNG--FG 248
+RG G G GG RGG G G GG+ S GG+ G R GGGYGG SG GY G G
Sbjct: 399 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 458
Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPRNQG 303
G + GGG + G Y +G +GG +GG G YGG GG ++G
Sbjct: 459 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 517
Query: 304 GYGGSSSSSSYGSGR 318
GYGG S YG R
Sbjct: 518 GYGGDRSRGGYGGDR 532
Score = 92.0 bits (227), Expect = 6e-19
Identities = 59/139 (42%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 188 SASSSQRGRSGSGNFGGGR-GGGFGGNDNFGRGGNFSG--RGGFGGSRGGGGYGGSGDGY 244
S+ G G +GG R GGG+GG+ RGG + G GG+GG R GGGYGG GY
Sbjct: 429 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDR-GGGYGGDRGGY 483
Query: 245 NGFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYG---GGGQYFAKP 299
G+ G +GG GG D G Y +G +GG G RS G YG GGG +
Sbjct: 484 G--GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGD 541
Query: 300 RNQGGYGGSSSSSSYGSGR 318
R+ GGYGG S YG R
Sbjct: 542 RS-GGYGGDRSGGGYGGDR 559
Score = 92.0 bits (227), Expect = 6e-19
Identities = 58/130 (44%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGG------GYGGSGDGY 244
RSG G +GG RGGG+GG+ G RGG + G RGG+GG RGGG GYGG GY
Sbjct: 447 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGY 505
Query: 245 NG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFA 297
G +G D +GG S +G S +G + G +GG RS G YGG GG Y
Sbjct: 506 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG 565
Query: 298 KPRNQGGYGG 307
++GGYGG
Sbjct: 566 ---DRGGYGG 572
Score = 70.1 bits (170), Expect = 2e-12
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 200 GNFGGGRGGGFGGN------DNFGRGGNFSG----RGGFGGSRGGGGYGGSGDGYNGFGN 249
G +GG RGGG+GG+ D G GG+ G RGG+GG R GGYGG G +G+G
Sbjct: 481 GGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGG 540
Query: 250 DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQ 302
D S G GG + G ++ +G +GG +GG+ GG Y RN+
Sbjct: 541 DRSG-GYGGDRSGGGYGGDRGGGYGGDRGG-YGGK----MGGRNDYRNDQRNR 587
Score = 51.6 bits (122), Expect = 9e-07
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSN 253
R G +GG R GG+GG+ + G G G GG+GG R GGYGG G N + ND N
Sbjct: 532 RGGGSGYGGDRSGGYGGDRSGGGYGGDRG-GGYGGDR--GGYGGKMGGRNDYRNDQRN 586
Score = 38.9 bits (89), Expect = 0.006
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND-----GSNFGGGGSYND-----FG 264
++G+ G G+ G GYG + Y+G+G G N+ G SY +G
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYG 65
Query: 265 NYNNQSSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSYG 315
Y NQ + S PY GQ +QGG S YG
Sbjct: 66 GYENQKQS----------SYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 108
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG 234
S G G +GG RGGG+GG+ RGG+GG GG
Sbjct: 543 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 576
Score = 33.5 bits (75), Expect = 0.26
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
G DN G GG+ GRGG+ G G SG GF NFGG Y + ++
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 223
Query: 269 QSSN 272
+S N
Sbjct: 224 ESDN 227
Score = 33.1 bits (74), Expect = 0.34
Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 156 HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDN 215
HDS + Q YH+ N +++++ RG GS GGGRG G G D
Sbjct: 136 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 189
Query: 216 FGRGGNFSGRGGFGGSRGG----GG---YGGSGDGYNGFGNDGSN------FGGGGSYND 262
GRG G GG RGG GG YG D + N +N G G S +
Sbjct: 190 DGRGPM---TGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQ 246
Query: 263 FGNYNNQ 269
G + Q
Sbjct: 247 VGEFFKQ 253
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
G+GGS+GGG G D GS+ G G + +FG + ++GP
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 217
Score = 28.5 bits (62), Expect = 8.3
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 248 GNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYG- 306
G+ G + G SY+ +GN +Q +G + YG +N GY
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYG---------QNYSGYSS 55
Query: 307 -GSSSSSSYG 315
G S S SYG
Sbjct: 56 YGQSYSQSYG 65
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 99.8 bits (247), Expect = 3e-21
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 164
K+FVGG+ DT E L F +YG+I + ++ DR + + RGF FVTF++ D+ D ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 165 QKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG---GGFGGNDNFGRGGN 221
+V+G V + A SS R R G GGRG GG G F RGG
Sbjct: 67 MNGKSVDGRQIRV-------DQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGG 119
Query: 222 FSGRGGFGGSRGGGGYGGSGDGYNGFGNDG--SNFGGGGSYND 262
G GG GGYGGS D Y+ G S+ GGSY D
Sbjct: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162
Score = 74.7 bits (182), Expect = 1e-13
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV-DAAMN 73
KLF+GGLSF+T ++SL F ++G +++ VV++D T+RSRGFGFVT+ +++ DA M
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 74 ARPHKVDGRVVEPKRAVSREDSQRPG 99
VDGR + +A D++ G
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 99.4 bits (246), Expect = 4e-21
Identities = 88/286 (30%), Positives = 120/286 (41%), Gaps = 67/286 (23%)
Query: 92 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--------VIEIMTDRGSG 143
R D+ + IFV G+ E + ++F+Q G I+ +I + TD+ +G
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280
Query: 144 KKRGFAFVTFDDHDS----VDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199
K +G A V+FDD S +D +++H G+ +V A + E S GR G
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGR 337
Query: 200 GNFGG-----GRGGG-----------FGGNDNFGR------------------GGNFSGR 225
G + G GRGG GN NF R GG+F GR
Sbjct: 338 GGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGR 397
Query: 226 GGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSS-----------NFG 274
G+GG RG G GG G G+G D S G GG + G Y+ S +G
Sbjct: 398 -GYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYG 456
Query: 275 PMKGGNFGGRSSGPYGG--GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
+GG +GG G YGG GG Y ++GGYGG YG R
Sbjct: 457 GDRGGGYGGDRGGGYGGDRGGGYGG---DRGGYGG-DRGGGYGGDR 498
Score = 92.0 bits (227), Expect = 6e-19
Identities = 56/135 (41%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGG--SGDGYNG--FG 248
+RG G G GG RGG G G GG+ S GG+ G R GGGYGG SG GY G G
Sbjct: 402 ERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGG 461
Query: 249 NDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG-----GGQYFAKPRNQG 303
G + GGG + G Y +G +GG +GG G YGG GG ++G
Sbjct: 462 GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGG-DRGGYGGDRGGYGGDRGGYGGDRG 520
Query: 304 GYGGSSSSSSYGSGR 318
GYGG S YG R
Sbjct: 521 GYGGDRSRGGYGGDR 535
Score = 92.0 bits (227), Expect = 6e-19
Identities = 59/139 (42%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 188 SASSSQRGRSGSGNFGGGR-GGGFGGNDNFGRGGNFSG--RGGFGGSRGGGGYGGSGDGY 244
S+ G G +GG R GGG+GG+ RGG + G GG+GG R GGGYGG GY
Sbjct: 432 SSGGGYSGDRSGGGYGGDRSGGGYGGD----RGGGYGGDRGGGYGGDR-GGGYGGDRGGY 486
Query: 245 NGFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYG---GGGQYFAKP 299
G+ G +GG GG D G Y +G +GG G RS G YG GGG +
Sbjct: 487 G--GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGD 544
Query: 300 RNQGGYGGSSSSSSYGSGR 318
R+ GGYGG S YG R
Sbjct: 545 RS-GGYGGDRSGGGYGGDR 562
Score = 92.0 bits (227), Expect = 6e-19
Identities = 58/130 (44%), Positives = 71/130 (54%), Gaps = 22/130 (16%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFG----RGGNFSG-RGGFGGSRGGG------GYGGSGDGY 244
RSG G +GG RGGG+GG+ G RGG + G RGG+GG RGGG GYGG GY
Sbjct: 450 RSGGG-YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGY 508
Query: 245 NG----FGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG-RSSGPYGG--GGQYFA 297
G +G D +GG S +G S +G + G +GG RS G YGG GG Y
Sbjct: 509 GGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGG 568
Query: 298 KPRNQGGYGG 307
++GGYGG
Sbjct: 569 ---DRGGYGG 575
Score = 70.1 bits (170), Expect = 2e-12
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 200 GNFGGGRGGGFGGN------DNFGRGGNFSG----RGGFGGSRGGGGYGGSGDGYNGFGN 249
G +GG RGGG+GG+ D G GG+ G RGG+GG R GGYGG G +G+G
Sbjct: 484 GGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGG 543
Query: 250 DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQ 302
D S G GG + G ++ +G +GG +GG+ GG Y RN+
Sbjct: 544 DRSG-GYGGDRSGGGYGGDRGGGYGGDRGG-YGGK----MGGRNDYRNDQRNR 590
Score = 51.6 bits (122), Expect = 9e-07
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSN 253
R G +GG R GG+GG+ + G G G GG+GG R GGYGG G N + ND N
Sbjct: 535 RGGGSGYGGDRSGGYGGDRSGGGYGGDRG-GGYGGDR--GGYGGKMGGRNDYRNDQRN 589
Score = 40.0 bits (92), Expect = 0.003
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGND-----GSNFGGGGSYNDFGNYNNQ 269
++G+ G G+ G GYG + Y+G+G G N+ G SY + +
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQ--SQSGY 63
Query: 270 SSNFGPMKGGNFGGRSSGPYGGGGQY--FAKPRNQGGYGGSSSSSSYG 315
S ++G + S PY GQ +QGG S YG
Sbjct: 64 SQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYG 111
Score = 37.0 bits (84), Expect = 0.023
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 11/45 (24%)
Query: 190 SSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG 234
S G G +GG RGGG+GG+ RGG+GG GG
Sbjct: 546 SGGYGGDRSGGGYGGDRGGGYGGD-----------RGGYGGKMGG 579
Score = 35.4 bits (80), Expect = 0.068
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 190 SSSQRGRSGSGNFGGGRGG--GFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
S S G GS +G G+G + G N+SG +G S+ G Y G+
Sbjct: 16 SYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQ-----SGYSQSYGGY 70
Query: 248 GNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAK---PRNQGG 304
N + YN+ G N S+ +GG YG Y + ++QG
Sbjct: 71 ENQKQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGS 128
Query: 305 YGGSSS 310
Y S+
Sbjct: 129 YDEQSN 134
Score = 33.5 bits (75), Expect = 0.26
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 235 GGYGGSG---DGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSG-- 287
G YG SG Y+ +GN GS G S + G S++G G ++G SG
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYS 64
Query: 288 -PYGG-----GGQYFAKPRNQGGYGGSSSSSSYGSGR 318
YGG Y +P N G + SS GR
Sbjct: 65 QSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGR 101
Score = 33.5 bits (75), Expect = 0.26
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 212 GNDNFGRGGNF---SGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNN 268
G DN G GG+ GRGG+ G G SG GF NFGG Y + ++
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGF----KNFGGHRDYGPRTDADS 226
Query: 269 QSSN 272
+S N
Sbjct: 227 ESDN 230
Score = 33.1 bits (74), Expect = 0.34
Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 156 HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDN 215
HDS + Q YH+ N +++++ RG GS GGGRG G G D
Sbjct: 139 HDSYSQNQ-QSYHSQR-ENYSHHTQDDRRDVSRYGEDNRGYGGSQ--GGGRGRG--GYDK 192
Query: 216 FGRGGNFSGRGGFGGSRGG----GG---YGGSGDGYNGFGNDGSN------FGGGGSYND 262
GRG G GG RGG GG YG D + N +N G G S +
Sbjct: 193 DGRGPM---TGSSGGDRGGFKNFGGHRDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQ 249
Query: 263 FGNYNNQ 269
G + Q
Sbjct: 250 VGEFFKQ 256
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 227 GFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGP 275
G+GGS+GGG G D GS+ G G + +FG + ++GP
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR----DYGP 220
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 93.6 bits (231), Expect = 2e-19
Identities = 58/142 (40%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNF--GRGGNFSGRGGFGGSRGGGGYGGSGDGYN 245
S RG SG GGG GGG+GG G GG++ G G GG GGG GGSG G++
Sbjct: 484 SYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHS 543
Query: 246 G------FGNDGSNFG-----GGGSYNDFGNYNNQSSNFGPMKGG--NFGGRSSGPYGGG 292
G G G N+G GGGS +G + G GG FGG S G YGGG
Sbjct: 544 GGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Query: 293 GQYFAKPRNQGGYGGSSSSSSY 314
+ + GGYGG S SS+
Sbjct: 604 EE---ASGSGGGYGGGSGKSSH 622
Score = 79.0 bits (193), Expect = 5e-15
Identities = 52/137 (37%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 197 SGSGNFG----GGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGND 250
SG+G G GG GG +G G GG++ G GG GG GG G GGSG Y G
Sbjct: 468 SGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGG-GGSGGGYGGGSGSRGGSGGSYGGGSGS 526
Query: 251 GSNFGGG-GSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS- 308
G GGG G + G+ GGN+GG S G GG Y ++GG GGS
Sbjct: 527 GGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSH 586
Query: 309 --------SSSSSYGSG 317
S SYG G
Sbjct: 587 GGGSGFGGESGGSYGGG 603
Score = 73.9 bits (180), Expect = 2e-13
Identities = 58/157 (36%), Positives = 67/157 (42%), Gaps = 46/157 (29%)
Query: 190 SSSQRGRSGSGNFGGGRGGG--------FGGNDNFGRGGNFSGRGGFGG------SRGGG 235
SSS RSG G GG GG F + G GG FS G+GG RGGG
Sbjct: 7 SSSYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGG 66
Query: 236 GY------GGSGDGYN------GFGNDGSNFGG--GGSYNDFGNYNNQSSNFGPMKGGNF 281
G GGSG G++ GFG FGG GG Y+ G + GG F
Sbjct: 67 GSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGF-----------GGGF 115
Query: 282 GGRSSGPYGGG-GQYFAKPRNQGGYGGSSSSSSYGSG 317
GG S G +GGG G F GG+GG + G G
Sbjct: 116 GGGSGGGFGGGYGSGF------GGFGGFGGGAGGGDG 146
Score = 73.6 bits (179), Expect = 2e-13
Identities = 45/111 (40%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 211 GGNDNFGRGG----NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNY 266
GG ++F G GRGG GGS G G GGSG Y G G+ G GG GS G
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGS 519
Query: 267 NNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 317
S G GG +GG S G + GG + G YGG S S GSG
Sbjct: 520 YGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG-GSG 569
Score = 67.4 bits (163), Expect = 2e-11
Identities = 45/100 (45%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 182 SKQEMASASSSQRGRSGSGNFG----GGRGGGF----------GGNDNFG--RGGNFSGR 225
S SS GR G G+FG GG GGGF GG+ FG GG +S
Sbjct: 49 SSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSS 108
Query: 226 GGFGGSRGGGGYGGSGDGY-NGFGNDGSNFGGGGSYNDFG 264
GGFGG GGG GG G GY +GFG G FGGG D G
Sbjct: 109 GGFGGGFGGGSGGGFGGGYGSGFGGFG-GFGGGAGGGDGG 147
Score = 65.5 bits (158), Expect = 6e-11
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 189 ASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGR---GGFGGSRGGGGYGGSGDGYN 245
+SSS G S G G GG FG + G GG FS GGFGG G G G SG GY+
Sbjct: 48 SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFG-GASGGGYS 106
Query: 246 GFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGG 283
G G FGGG G Y + FG GG GG
Sbjct: 107 SSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGG 144
Score = 56.2 bits (134), Expect = 4e-08
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 215 NFGRGGNFSGRGGFGGSRGGGGYGGSGDGY--NGFGNDGSNFGGGGSYNDFGNYNNQSSN 272
N GG G G GG GGSG Y G G ++GGGGS +G +
Sbjct: 456 NLLEGGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
Query: 273 FGPMKGG--NFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSG 317
G GG GG S G YGGG + GG+ G S +YG G
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSG-GSGGNYGGG 561
Score = 46.6 bits (109), Expect = 3e-05
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 221 NFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGN 280
++ R G GG G G G Y+ F + G GGGG ++ Y SS GG
Sbjct: 9 SYLSRSGGGGGGGLGSGGSIRSSYSRFSSSGGG-GGGGRFSSSSGYGGGSSRVCGRGGGG 67
Query: 281 FGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGRR 319
G S YGGG + GG+ SS +G G R
Sbjct: 68 SFGYS---YGGG--------SGGGFSASSLGGGFGGGSR 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,987,510
Number of Sequences: 37866
Number of extensions: 796314
Number of successful extensions: 19465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 4081
Number of HSP's gapped (non-prelim): 5301
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.