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Search of human proteins with 4503563
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503563 epithelial membrane protein 3 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503563 epithelial membrane protein 3 [Homo sapiens] 338 2e-93
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 134 3e-32
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 134 3e-32
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 134 3e-32
gi|4503561 epithelial membrane protein 2 [Homo sapiens] 121 3e-28
gi|4503559 epithelial membrane protein 1 [Homo sapiens] 94 7e-20
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 55 3e-08
gi|13899273 transmembrane protein 47 [Homo sapiens] 38 0.004
gi|169163665 PREDICTED: similar to hCG1784039 [Homo sapiens] 37 0.006
gi|169163222 PREDICTED: hypothetical protein LOC391359 [Homo sap... 37 0.006
gi|50345279 claudin 18 isoform 2 [Homo sapiens] 35 0.029
gi|7705961 claudin 18 isoform 1 [Homo sapiens] 35 0.029
gi|47716519 claudin 20 [Homo sapiens] 33 0.14
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 32 0.32
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.32
gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo... 32 0.32
gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens] 32 0.32
gi|226437592 transmembrane protein 114 [Homo sapiens] 32 0.32
gi|53828672 olfactory receptor, family 4, subfamily F, member 15... 30 0.92
gi|7656981 claudin 15 [Homo sapiens] 30 0.92
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 30 1.2
gi|111607482 transmembrane protein 140 [Homo sapiens] 30 1.2
gi|52353302 transmembrane protein 198 [Homo sapiens] 29 1.6
gi|10938016 claudin 11 [Homo sapiens] 29 2.1
gi|169166892 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|169166322 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
gi|30023836 cytochrome P450 4Z1 [Homo sapiens] 28 2.7
gi|112181295 hypothetical protein LOC152002 [Homo sapiens] 28 2.7
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 28 3.5
gi|118026935 asparagine-linked glycosylation 9 protein isoform d... 28 3.5
>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
Length = 163
Score = 338 bits (866), Expect = 2e-93
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN
Sbjct: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
Query: 61 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI
Sbjct: 61 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
Query: 121 HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE
Sbjct: 121 HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 134 bits (338), Expect = 3e-32
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
M LLLL + LH+ +L+LLFV+T+ S W + + +LW +C+ ++ C + S N
Sbjct: 1 MLLLLLSIIVLHVAVLVLLFVSTI-VSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPN 59
Query: 61 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
WL++VQ M+LS+I LS LF QL+T+ +GG FY TG+ Q+ + V + A IY +
Sbjct: 60 EWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTV 119
Query: 121 -HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
H E L S+G+ + LAWVAFPLAL+SG+IY+ LRKRE
Sbjct: 120 RHPEWHLNS---DYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 134 bits (338), Expect = 3e-32
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
M LLLL + LH+ +L+LLFV+T+ S W + + +LW +C+ ++ C + S N
Sbjct: 1 MLLLLLSIIVLHVAVLVLLFVSTI-VSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPN 59
Query: 61 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
WL++VQ M+LS+I LS LF QL+T+ +GG FY TG+ Q+ + V + A IY +
Sbjct: 60 EWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTV 119
Query: 121 -HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
H E L S+G+ + LAWVAFPLAL+SG+IY+ LRKRE
Sbjct: 120 RHPEWHLNS---DYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 134 bits (338), Expect = 3e-32
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
M LLLL + LH+ +L+LLFV+T+ S W + + +LW +C+ ++ C + S N
Sbjct: 1 MLLLLLSIIVLHVAVLVLLFVSTI-VSQWIVGNGHATDLWQNCSTSSSGNVHHCFSSSPN 59
Query: 61 GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
WL++VQ M+LS+I LS LF QL+T+ +GG FY TG+ Q+ + V + A IY +
Sbjct: 60 EWLQSVQATMILSIIFSILSLFLFFCQLFTLTKGGRFYITGIFQILAGLCVMSAAAIYTV 119
Query: 121 -HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
H E L S+G+ + LAWVAFPLAL+SG+IY+ LRKRE
Sbjct: 120 RHPEWHLNS---DYSYGFAYILAWVAFPLALLSGVIYVILRKRE 160
>gi|4503561 epithelial membrane protein 2 [Homo sapiens]
Length = 167
Score = 121 bits (303), Expect = 3e-28
Identities = 68/170 (40%), Positives = 99/170 (58%), Gaps = 10/170 (5%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESL-NLWYDCTWNNDTKTWACSNVSE 59
M +LL + A HI LLF+AT+D +WW G E ++W CT NN T + E
Sbjct: 1 MLVLLAFIIAFHITSAALLFIATVDNAWWV--GDEFFADVWRICT-NNTNCTVINDSFQE 57
Query: 60 NGWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYA 119
L+AVQ M+LS ILCC++F +F+ QL+ +++G F T + QL + + V A IY
Sbjct: 58 YSTLQAVQATMILSTILCCIAFFIFVLQLFRLKQGERFVLTSIIQLMSCLCVMIAASIYT 117
Query: 120 IHAEEILEKH------PRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
E+I +K+ R GS+GY + LAWVAF +SG++Y+ LRKR+
Sbjct: 118 DRREDIHDKNAKFYPVTREGSYGYSYILAWVAFACTFISGMMYLILRKRK 167
>gi|4503559 epithelial membrane protein 1 [Homo sapiens]
Length = 157
Score = 93.6 bits (231), Expect = 7e-20
Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKE-SLNLWYDCTWNNDTKTWACSNVSE 59
M +LL + +HI +I+LFV+T+ W + S+ LW +CT N + + + S SE
Sbjct: 1 MLVLLAGIFVVHIATVIMLFVSTIANVWLVSNTVDASVGLWKNCT--NISCSDSLSYASE 58
Query: 60 NGWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYA 119
+ LK VQ M+LS+I C ++ ++F+FQL+TM +G F+ +G L + + G IY
Sbjct: 59 DA-LKTVQAFMILSIIFCVIALLVFVFQLFTMEKGNRFFLSGATTLVCWLCILVGVSIYT 117
Query: 120 IHAEEILEKHPRGGS---FGYCFALAWVAFPLALVSGIIYIHLRKR 162
H R G+ GY + L W+ F + + G++Y+ LRK+
Sbjct: 118 SHYAN------RDGTQYHHGYSYILGWICFCFSFIIGVLYLVLRKK 157
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 55.1 bits (131), Expect = 3e-08
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
M +LL A HI LLF+AT+D +WW G E ++ W TK C+ ++++
Sbjct: 1 MLVLLTFTVAFHITSAALLFIATIDNAWWV--GNE----FFADVWRICTKNTKCTVINDS 54
Query: 61 ---------GWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAV 111
WL V + + C L L + + L + + LC +A
Sbjct: 55 FKEYSMGRARWLTPV-IPALWEAEACGLXGQEIETSLANIMK--LLHHATMSYLCLMIA- 110
Query: 112 FTGALIYAIHAEEILEKH--PRGGSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
A IY +E + + + GS+GY + LAWVAF +S ++Y+ + E
Sbjct: 111 ---ASIYTDRRDETTDFYYLTKEGSYGYSYILAWVAFAFTFISSMMYLITEEAE 161
>gi|13899273 transmembrane protein 47 [Homo sapiens]
Length = 181
Score = 37.7 bits (86), Expect = 0.004
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 8/157 (5%)
Query: 7 VVSALHILILILLFVA-------TLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSE 59
V++ L ++ L+ +F+A L +W T + L+LW C W C +
Sbjct: 15 VLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLS 74
Query: 60 NGWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYA 119
+ W A L++ + ++F++ + + R + + V ++Y
Sbjct: 75 SDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYP 134
Query: 120 IHAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIY 156
I E + F + + LAW A + I+Y
Sbjct: 135 IKFIETVSLKIY-HEFNWGYGLAWGATIFSFGGAILY 170
>gi|169163665 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 93
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESL-NLWYDCTWN 46
M +LL A HI LLF+AT+D +WW G E ++W CT N
Sbjct: 1 MLVLLTFTVAFHITSAALLFIATIDNAWWV--GNEFFADVWRICTKN 45
Score = 34.7 bits (78), Expect = 0.037
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 133 GSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
GS+GY + LAWVAF +S ++Y+ + E
Sbjct: 63 GSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
>gi|169163222 PREDICTED: hypothetical protein LOC391359 [Homo
sapiens]
Length = 93
Score = 37.4 bits (85), Expect = 0.006
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1 MSLLLLVVSALHILILILLFVATLDKSWWTLPGKESL-NLWYDCTWN 46
M +LL A HI LLF+AT+D +WW G E ++W CT N
Sbjct: 1 MLVLLTFTVAFHITSAALLFIATIDNAWWV--GNEFFADVWRICTKN 45
Score = 34.7 bits (78), Expect = 0.037
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 133 GSFGYCFALAWVAFPLALVSGIIYIHLRKRE 163
GS+GY + LAWVAF +S ++Y+ + E
Sbjct: 63 GSYGYSYILAWVAFAFTFISSMMYLITEEAE 93
>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
Length = 261
Score = 35.0 bits (79), Expect = 0.029
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 63 LKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGL---------------FYATGLCQLCT 107
L+AV+ LM++ ++L + ++ +F L +R G + F +GLC +
Sbjct: 76 LQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIA- 134
Query: 108 SVAVFTGALIYAIHAEEILEKHPRGG---------SFGYCFALAWVAFPLALVSGII 155
V+VF L+ GG +FG + WVA L L+ G++
Sbjct: 135 GVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGGVM 191
>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
Length = 261
Score = 35.0 bits (79), Expect = 0.029
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 63 LKAVQVLMVLSLILCCLSFILFMFQLYTMRRGGL---------------FYATGLCQLCT 107
L+AV+ LM++ ++L + ++ +F L +R G + F +GLC +
Sbjct: 76 LQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIA- 134
Query: 108 SVAVFTGALIYAIHAEEILEKHPRGG---------SFGYCFALAWVAFPLALVSGII 155
V+VF L+ GG +FG + WVA L L+ G++
Sbjct: 135 GVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGGVM 191
>gi|47716519 claudin 20 [Homo sapiens]
Length = 219
Score = 32.7 bits (73), Expect = 0.14
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 39 LWYDCTWNNDTKTWAC----SNVSENGWLKAVQVLMVLSLILCCLSFILFMFQLYTMRRG 94
LW DCTW + T ++C S +S ++A + MVL+ +L L + R G
Sbjct: 50 LWMDCTWYS-TGMFSCALKHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLG 108
Query: 95 G-------LFYATGLCQLCTSVAVFTGALIYAIHAEEIL-----------EKHPRGGSFG 136
G +A G+C + ++ + Y +EI+ KH GG+
Sbjct: 109 GDRETKSHASFAGGVCFMSAGISSLISTVWY---TKEIIANFLDLTVPESNKHEPGGAIY 165
Query: 137 YCFALAWVAFPLALVSGIIY 156
F A + F +SG+I+
Sbjct: 166 IGFISAMLLF----ISGMIF 181
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 0.32
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 17 ILLFVATLDKSW--WTLPGKES-LNLWYDCTWNNDTKTWACSNVSEN-GWLKAVQVLMVL 72
ILL VA W + L G + LW C N C +++ + A + M+L
Sbjct: 17 ILLVVAMATDHWMQYRLSGSFAHQGLWRYCLGNK------CYLQTDSIAYWNATRAFMIL 70
Query: 73 SLILCCLSFILFMFQLY----TMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEILEK 128
S LC +S I+ + T R ++ G+ +++ V IY L +
Sbjct: 71 SA-LCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGVTVSFLGR 129
Query: 129 HPRGGSFGYCFALAWVAFPLALVSGIIYI 157
F + + L WVA + +GI Y+
Sbjct: 130 RFGDWRFSWSYILGWVAVLMTFFAGIFYM 158
>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 31.6 bits (70), Expect = 0.32
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 108 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 162
Query: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
EE SFG+ AL W++F L++G ++
Sbjct: 163 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 207
>gi|239752599 PREDICTED: transmembrane protein 114, partial [Homo
sapiens]
Length = 217
Score = 31.6 bits (70), Expect = 0.32
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 102 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 156
Query: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
EE SFG+ AL W++F L++G ++
Sbjct: 157 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 201
>gi|239745400 PREDICTED: transmembrane protein 114 [Homo sapiens]
Length = 122
Score = 31.6 bits (70), Expect = 0.32
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 7 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 61
Query: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
EE SFG+ AL W++F L++G ++
Sbjct: 62 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 106
>gi|226437592 transmembrane protein 114 [Homo sapiens]
Length = 223
Score = 31.6 bits (70), Expect = 0.32
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)
Query: 68 VLMVLSLILCCLS----FILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHA- 122
+L+ LSLIL F+ F+ Q Y L TG+ L ++ G +Y ++
Sbjct: 108 ILLPLSLILMVFGGMTGFLSFLLQAYL-----LLLLTGILFLFGAMVTLAGISVYIAYSA 162
Query: 123 ----------EEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
EE SFG+ AL W++F L++G ++
Sbjct: 163 AAFREALCLLEEKALLDQVDISFGWSLALGWISFIAELLTGAAFL 207
>gi|53828672 olfactory receptor, family 4, subfamily F, member 15
[Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 0.92
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 53 ACSNVSENGWLKAVQ--VLMVLSLILCCLSFILFMFQLYTMRRGGLFYA-TGLCQLCTSV 109
AC+N E ++ V ++ V S +L +S+I +F ++ GGL A + L T V
Sbjct: 188 ACTNTQELEFMVTVNSGLISVGSFVLLVISYIFILFTVWKHSSGGLAKALSTLSAHVTVV 247
Query: 110 AVFTGALIY 118
+F G L++
Sbjct: 248 ILFFGPLMF 256
>gi|7656981 claudin 15 [Homo sapiens]
Length = 228
Score = 30.0 bits (66), Expect = 0.92
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 14/93 (15%)
Query: 17 ILLFVATLDKSWW---TLPGKESL------NLWYDCTWNNDTKTWAC----SNVSENGWL 63
+L+ TL S+W T+ G NLW+ C + + C S ++ +G++
Sbjct: 17 LLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCA-TDSLGVYNCWEFPSMLALSGYI 75
Query: 64 KAVQVLMVLSLILCCLSFILFMFQLYTMRRGGL 96
+A + LM+ +++L L +L + L GGL
Sbjct: 76 QACRALMITAILLGFLGLLLGIAGLRCTNIGGL 108
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 65 AVQVLMVLSLILCCLSFILFMFQLY----TMRRGGLFYATGLCQLCTSVAVFTGALIYAI 120
A + M+LS LC +S I+ + T R ++ G+ +++ V IY
Sbjct: 105 ATRAFMILSA-LCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTG 163
Query: 121 HAEEILEKHPRGGSFGYCFALAWVAFPLALVSGIIYI 157
L + F + + L WVA + +GI Y+
Sbjct: 164 VTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFYM 200
>gi|111607482 transmembrane protein 140 [Homo sapiens]
Length = 185
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 3 LLLLVVSALHILILILLFVATLDKSW--WTLPGKESLNLWYDCTWNNDTKTWACSNVSEN 60
LL + + L I+++ L+F A L ++ LP + + C WN DT T C E
Sbjct: 12 LLFMSIIVLVIVVICLMFYALLWEAGNLTDLPNLR-IGFYNFCLWNEDTSTLQCHQFPEL 70
Query: 61 GWLKAVQVLMVLSLILCCLSFILFMF 86
L +V + L+ + S +L +F
Sbjct: 71 EALGVPRVGLGLARLGVYGSLVLTLF 96
>gi|52353302 transmembrane protein 198 [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 1.6
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 67 QVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEIL 126
Q L L I+CCL +++ F Y + LF TGL L SV +F + E +L
Sbjct: 35 QALPALVCIMCCLFGVVYCFFGYRCFKAVLF-LTGL--LFGSVVIF-----LLCYRERVL 86
Query: 127 EKHPRGGSFGYCFALAWVAFPLALVSGIIYIHLR 160
E G A A +A + L+ G++ + +R
Sbjct: 87 ETQLSAG------ASAGIALGIGLLCGLVAMLVR 114
>gi|10938016 claudin 11 [Homo sapiens]
Length = 207
Score = 28.9 bits (63), Expect = 2.1
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 36 SLNLWYDCTWNNDTKTWACSNVSE----NGWLKAVQVLMVLSLILCCLSFILFMFQLYTM 91
S LW DC T + C + + G+++A + LM+ + +L + +L + L +
Sbjct: 49 SKGLWADCVMA--TGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCI 106
Query: 92 RRGG----LFYATGLCQLCTSVAVFTGALIYAIHAEEILEKHPRGGSFGYCFALAWVAFP 147
R G Y + + AL+ I + SFGY W+
Sbjct: 107 RMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAV 166
Query: 148 LALVSGIIYI 157
L LV G + +
Sbjct: 167 LCLVGGCVIL 176
>gi|169166892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 28.5 bits (62), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 32 PGKESLNLWYDCTWNNDTKTWA--CSNVSENGWLKAVQVLMVLSLIL 76
P +L+ + CT NDT W C +VS G++ V LSL L
Sbjct: 185 PSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFL 231
>gi|169166322 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 28.5 bits (62), Expect = 2.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 32 PGKESLNLWYDCTWNNDTKTWA--CSNVSENGWLKAVQVLMVLSLIL 76
P +L+ + CT NDT W C +VS G++ V LSL L
Sbjct: 185 PSSGALSRAFKCTKANDTVPWVALCRSVSLMGFVGTVNAYKRLSLFL 231
>gi|30023836 cytochrome P450 4Z1 [Homo sapiens]
Length = 505
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 59 ENGWLKAVQVLMVLSLILCCLSFILF-MFQLYTMRR 93
E WL+ + L LIL C+S +LF + +LY RR
Sbjct: 2 EPSWLQELMAHPFLLLILLCMSLLLFQVIRLYQRRR 37
>gi|112181295 hypothetical protein LOC152002 [Homo sapiens]
Length = 393
Score = 28.5 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 25 DKSWWTLPGKESLNLWY--DCTWNNDTKTW 52
D+ ++T+ G E L++ DCTWN TW
Sbjct: 330 DQDFFTMIGMEHPKLFHVLDCTWNRQLCTW 359
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 28.1 bits (61), Expect = 3.5
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 71 VLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAEEIL---- 126
VL++++ C F L T+ GG + L + T AV T ALI A+
Sbjct: 466 VLAVVITC-----FFGSLVTLTFGGAYVVKLLEEYATGPAVLTVALIEAVAVSWFYGITQ 520
Query: 127 ----EKHPRGGSFGYCFALAWVAF-PLALV 151
K G S G+ + + WVA PL L+
Sbjct: 521 FCRDVKEMLGFSPGWFWRICWVAISPLFLL 550
>gi|118026935 asparagine-linked glycosylation 9 protein isoform d
[Homo sapiens]
Length = 440
Score = 28.1 bits (61), Expect = 3.5
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 70 MVLSLILCCLSFILFMFQL--YTMRRGGLFYAT----GLCQLCTSVAVFTG--------A 115
+ LS + C F+ ++L YT+ L T GL SVA+F G
Sbjct: 214 VALSALQKCYHFVFQRYRLEHYTVTSNWLALGTVFLFGLLSFSRSVALFRGYHGPLDLYP 273
Query: 116 LIYAIHAEEILEKHPRGGSFGYCFALAWVAFP 147
Y I + + P G C W FP
Sbjct: 274 EFYRIATDPTIHTVPEGRPVNVCVGKEWYRFP 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.142 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,006,892
Number of Sequences: 37866
Number of extensions: 232830
Number of successful extensions: 777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 40
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.