Guide to the Human Genome
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Name: LOC391359 Sequence: fasta or formatted (93aa) NCBI GI: 169163665
Description:

PREDICTED: similar to hCG1784039

Not currently referenced in the text

Other entries for this name:
alt mRNA {93aa} PREDICTED: hypothetical protein LOC391359
alt prot {161aa} PREDICTED: similar to hCG1784039
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         10           2
 C cysteine            1.1          1           1
 D aspartate           4.3          4           1
 E glutamate           6.5          6           2
 F phenylalanine       9.7          9           2
 G glycine             3.2          3           1
 H histidine           1.1          1           1
 I isoleucine          7.5          7           1
 K lysine              3.2          3           1
 L leucine             8.6          8           2
 M methionine          3.2          3           2
 N asparagine          3.2          3           1
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine            3.2          3           2
 S serine              5.4          5           2
 T threonine          11.8         11           2
 V valine              5.4          5           1
 W tryptophan          4.3          4           2
 Y tyrosine            7.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1784039 
LOC391359             1.000   PREDICTED: hypothetical protein LOC391359 
LOC391359             0.450   PREDICTED: similar to hCG1784039 
EMP2                  0.391   epithelial membrane protein 2 
PMP22                 0.095   peripheral myelin protein 22 
PMP22                 0.095   peripheral myelin protein 22 
PMP22                 0.095   peripheral myelin protein 22 
EMP1                  0.089   epithelial membrane protein 1 
EMP3                  0.071   epithelial membrane protein 3 
LIM2                  0.024   lens intrinsic membrane protein 2, 19kDa isoform 2 ...
LIM2                  0.024   lens intrinsic membrane protein 2, 19kDa isoform 1 [...
ITPR3                 0.018   inositol 1,4,5-triphosphate receptor, type 3 
DOCK11                0.012   dedicator of cytokinesis 11 
CACNA1S               0.012   calcium channel, voltage-dependent, L type, alpha 1...
TMEM182               0.006   transmembrane protein 182 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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