Search of human proteins with 4503323

Search of human proteins with 4503323

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503323 dihydrofolate reductase [Homo sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503323 dihydrofolate reductase [Homo sapiens]                     383   e-107
gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo ...   383   e-107
gi|28827793 dihydrofolate reductase-like 1 [Homo sapiens]             345   1e-95
gi|239787106 zinc finger protein 610 isoform b [Homo sapiens]          28   3.5  
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]         28   3.5  

>gi|4503323 dihydrofolate reductase [Homo sapiens]
          Length = 187

 Score =  383 bits (984), Expect = e-107
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 60
           MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS
Sbjct: 1   MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 60

Query: 61  IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 120
           IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS
Sbjct: 61  IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 120

Query: 121 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 180
           VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF
Sbjct: 121 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 180

Query: 181 EVYEKND 187
           EVYEKND
Sbjct: 181 EVYEKND 187


>gi|239748594 PREDICTED: hypothetical protein XP_002346735 [Homo
           sapiens]
          Length = 262

 Score =  383 bits (984), Expect = e-107
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 60
           MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS
Sbjct: 76  MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 135

Query: 61  IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 120
           IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS
Sbjct: 136 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 195

Query: 121 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 180
           VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF
Sbjct: 196 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 255

Query: 181 EVYEKND 187
           EVYEKND
Sbjct: 256 EVYEKND 262


>gi|28827793 dihydrofolate reductase-like 1 [Homo sapiens]
          Length = 187

 Score =  345 bits (886), Expect = 1e-95
 Identities = 171/183 (93%), Positives = 176/183 (96%)

Query: 5   LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEK 64
           LNCIVAVSQNMGIGKNGDLP PPLRNEFRYFQRMTTTSSVEGKQNLVIMG+KTWFSIPEK
Sbjct: 5   LNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEK 64

Query: 65  NRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKE 124
           NRPLK RINLVLSRELKEPPQGAHFL+RSLDDALKLTE+PELANKVDM+WIVGGSSVYKE
Sbjct: 65  NRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSSVYKE 124

Query: 125 AMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYE 184
           AMNH GHLKLFVTRIMQDFESDTFF EIDLEKYKLLPEYPGVLSDVQE K IKYKFEV E
Sbjct: 125 AMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKFEVCE 184

Query: 185 KND 187
           K+D
Sbjct: 185 KDD 187


>gi|239787106 zinc finger protein 610 isoform b [Homo sapiens]
          Length = 419

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 44 VEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKE 82
          +E  +NLV +G+        +N+P+K ++ L L   L E
Sbjct: 54 LENYRNLVFLGRSCVLGSNAENKPIKNQLGLTLEAHLSE 92


>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
          Length = 2229

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 1   MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQN 49
           M+ +  C    S+N G  + G  P P LR E R   R    +  +GK+N
Sbjct: 281 MLPAFMCSPKSSENQGTVERGSFPLPQLRLEPRVPFRQFQMNDQDGKEN 329


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,407
Number of Sequences: 37866
Number of extensions: 314961
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.