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Search of human proteins with 4502737
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502737 cyclin-dependent kinase 5, regulatory subunit 1
[Homo sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502737 cyclin-dependent kinase 5, regulatory subunit 1 [Homo... 619 e-177
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 280 1e-75
gi|148491106 zinc finger protein 295 isoform S [Homo sapiens] 41 0.001
gi|148491088 zinc finger protein 295 isoform L [Homo sapiens] 41 0.001
gi|50345873 zinc finger protein 295 isoform L [Homo sapiens] 41 0.001
gi|223278393 protein phosphatase 1, regulatory (inhibitor) subun... 36 0.037
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 34 0.14
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 34 0.14
gi|187761324 shootin1 isoform a [Homo sapiens] 34 0.19
gi|50511340 shootin1 isoform b [Homo sapiens] 34 0.19
gi|30425386 hypothetical protein LOC128826 [Homo sapiens] 34 0.19
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens] 33 0.24
gi|87196343 PDZ domain containing 2 [Homo sapiens] 33 0.24
gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Ho... 33 0.41
gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Ho... 33 0.41
gi|239744207 PREDICTED: chromosome 10 open reading frame 134 [Ho... 33 0.41
gi|215599585 integrator complex subunit 12 [Homo sapiens] 33 0.41
gi|21361851 integrator complex subunit 12 [Homo sapiens] 33 0.41
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 33 0.41
gi|33286444 mastermind-like 2 [Homo sapiens] 32 0.54
gi|19924103 synapsin II isoform IIa [Homo sapiens] 32 0.54
gi|19924101 synapsin II isoform IIb [Homo sapiens] 32 0.54
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 32 0.71
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 32 0.71
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 32 0.71
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.71
gi|18765741 snail 1 homolog [Homo sapiens] 31 1.2
gi|116284392 mucin 2 precursor [Homo sapiens] 31 1.2
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 31 1.2
gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens] 31 1.2
>gi|4502737 cyclin-dependent kinase 5, regulatory subunit 1 [Homo
sapiens]
Length = 307
Score = 619 bits (1595), Expect = e-177
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSA 60
MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSA
Sbjct: 1 MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSA 60
Query: 61 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG 120
KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG
Sbjct: 61 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG 120
Query: 121 GSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRS 180
GSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRS
Sbjct: 121 GSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRS 180
Query: 181 VDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE 240
VDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE
Sbjct: 181 VDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE 240
Query: 241 ISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKR 300
ISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKR
Sbjct: 241 ISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKR 300
Query: 301 LLLGLDR 307
LLLGLDR
Sbjct: 301 LLLGLDR 307
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 280 bits (715), Expect = 1e-75
Identities = 170/328 (51%), Positives = 200/328 (60%), Gaps = 36/328 (10%)
Query: 1 MGTVLSLSPSY-----RKATLFED-------GAATVGHYTAVQNSKNAK-DKNLKRHSI- 46
MGTVLSLSP+ R L E+ G +G Y A K K + LKR S+
Sbjct: 1 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL 60
Query: 47 ISVLPWKRIVAVSAKKKN-SKKVQPNSSYQNN---ITHLNNENLKKSL-----SCANLST 97
IS L WKR+VA SAKKK SKKV P + + N ENL +
Sbjct: 61 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP 120
Query: 98 FAQPPPAQPPA-----PPASQLSGSQTGGSSSVKKAPHPAVTS-------AGTPKRVIVQ 145
A P P P A PP+ + +Q GS K P P G+P+RVIVQ
Sbjct: 121 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ 180
Query: 146 ASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLY 205
AST ELLRCLG+F+CRRCYRLK LSP + V W R VDRSLLLQGWQDQ FITPAN+VF+Y
Sbjct: 181 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY 240
Query: 206 MLCRDVI-SSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSV 264
+LCR+ + E+ S ELQA LTCLYL+YSYMGNEISYPLKPFLVE KE FW RCL +
Sbjct: 241 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL 300
Query: 265 INLMSSKMLQINADPHYFTQVFSDLKNE 292
I +S +ML++NADPH+FTQVF DLKNE
Sbjct: 301 IQRLSPQMLRLNADPHFFTQVFQDLKNE 328
>gi|148491106 zinc finger protein 295 isoform S [Homo sapiens]
Length = 865
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 39 KNLKRHS--IISVLPWKRIVAVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLS 96
K L+RH + SV P+ V A + N + S +Q++++ + E+ K +
Sbjct: 721 KQLERHQELLCSVKPFICHVCNKAFRTNFRLW---SHFQSHMSQASEESAHKESEVCPVP 777
Query: 97 TFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTPKR---VIVQASTSELLR 153
T + PP PP PP ++ + + + + P PA P+ + A +
Sbjct: 778 TNSPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAIT 837
Query: 154 CLGEFLCRRCYR 165
+F+C+ C+R
Sbjct: 838 FKRQFMCKLCHR 849
>gi|148491088 zinc finger protein 295 isoform L [Homo sapiens]
Length = 1066
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 39 KNLKRHS--IISVLPWKRIVAVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLS 96
K L+RH + SV P+ V A + N + S +Q++++ + E+ K +
Sbjct: 922 KQLERHQELLCSVKPFICHVCNKAFRTNFRLW---SHFQSHMSQASEESAHKESEVCPVP 978
Query: 97 TFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTPKR---VIVQASTSELLR 153
T + PP PP PP ++ + + + + P PA P+ + A +
Sbjct: 979 TNSPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAIT 1038
Query: 154 CLGEFLCRRCYR 165
+F+C+ C+R
Sbjct: 1039 FKRQFMCKLCHR 1050
>gi|50345873 zinc finger protein 295 isoform L [Homo sapiens]
Length = 1066
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 39 KNLKRHS--IISVLPWKRIVAVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLS 96
K L+RH + SV P+ V A + N + S +Q++++ + E+ K +
Sbjct: 922 KQLERHQELLCSVKPFICHVCNKAFRTNFRLW---SHFQSHMSQASEESAHKESEVCPVP 978
Query: 97 TFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTPKR---VIVQASTSELLR 153
T + PP PP PP ++ + + + + P PA P+ + A +
Sbjct: 979 TNSPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAIT 1038
Query: 154 CLGEFLCRRCYR 165
+F+C+ C+R
Sbjct: 1039 FKRQFMCKLCHR 1050
>gi|223278393 protein phosphatase 1, regulatory (inhibitor) subunit
3G [Homo sapiens]
Length = 358
Score = 36.2 bits (82), Expect = 0.037
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 89 SLSCANLSTFAQPPPAQP-PAPPASQLSGSQTGGSSSVKKAPHPAVTSAG-TPKRVIVQA 146
SL + F + PPA+ PAP + G GG +S +P + +PK
Sbjct: 9 SLEAPGPAPFREAPPAEELPAPVVPCVQGGGDGGGASETPSPDAQLGDRPLSPKEEAAPQ 68
Query: 147 STSELLRCLGEFLCRRCYRLKHLSPTDPVL 176
ELL C RRC P DP+L
Sbjct: 69 EQEELLECR-----RRCRARSFSLPADPIL 93
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 89 SLSCANLSTFAQ---PPPAQPPAPPASQLSGSQT--GGSSSVKKAPHP 131
SLS A Q PPP PP PP+S LSG QT S KK P
Sbjct: 3104 SLSSAPTKPLLQTPPPPPPPPPPPPSSSLSGQQTEQQNKESEKKQTKP 3151
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 34.3 bits (77), Expect = 0.14
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 54 RIVAVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSL---SCANLSTFAQPPPAQPPAPP 110
+I A+ K+K ++ PN Q H + E +K + S +LS + + P
Sbjct: 482 KIAAMHVKRKQLHQLLPNHVLQKKKKH-STEGVKLTALNDSSLDLSMDSDNSMSVPSPTS 540
Query: 111 ASQLSGSQTGGSSSVKKAPHPAVTSAGTPKRVIVQASTSEL 151
A++ S + GSS + +P PAVT+A + S ++
Sbjct: 541 ATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQV 581
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 33.9 bits (76), Expect = 0.19
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 61 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG 120
KK+ K Q + N+ H +E K+ N PPP P PP + +
Sbjct: 317 KKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLM-- 374
Query: 121 GSSSVKKAPHPAVTSAGTPKRVIVQASTSE----LLRCLGEFLCRRCYRLKHLSPTD 173
S ++K HP + +G K Q T+E L R E + R + HL P +
Sbjct: 375 --SMIRKRSHP--SGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVN 427
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 33.9 bits (76), Expect = 0.19
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 61 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG 120
KK+ K Q + N+ H +E K+ N PPP P PP + +
Sbjct: 317 KKELELKYQNSEEKARNLKHSVDELQKRVNQSENSVPPPPPPPPPLPPPPPNPIRSLM-- 374
Query: 121 GSSSVKKAPHPAVTSAGTPKRVIVQASTSE----LLRCLGEFLCRRCYRLKHLSPTD 173
S ++K HP + +G K Q T+E L R E + R + HL P +
Sbjct: 375 --SMIRKRSHP--SGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKGVHLRPVN 427
>gi|30425386 hypothetical protein LOC128826 [Homo sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.19
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 53 KRIVAVSAKKKNSKKVQPNSSYQNNITHLNNEN--LKKSLSCANLSTFAQPPPAQPPAPP 110
+R V+ + S + Q S + +ITH EN LK+ L N F+QP P P
Sbjct: 22 ERTQQVARGEPGSARGQLQVSPEMSITHKEKENAHLKEILLFVNAEAFSQPQPHSAPVCE 81
Query: 111 ASQLSG-------SQTGGSSS 124
QL+G ++ GG +S
Sbjct: 82 GQQLTGKFSTSVLTRAGGDAS 102
>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
Length = 1578
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 81 LNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTPK 140
L++ L K C +L QPP P P ++ S G SS+ A A SA T
Sbjct: 539 LSDRRLVKLAPCRSLIKEEQPP-GNSPTPEVARRGPSTCGASSTTDSAESEASDSANTES 597
Query: 141 RVIVQASTSELLRCLGE 157
R + +SE + L E
Sbjct: 598 RGYRTSGSSESMDALEE 614
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 33.5 bits (75), Expect = 0.24
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 14/131 (10%)
Query: 23 TVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSAKKKNSKKV---QPNSSYQNNIT 79
T+ + S D LK+ +P + S K+N V QP+ ++ +
Sbjct: 2424 TISRQNPPETSSKGSDSELKKSLGPLGIPTPTMTLASPVKRNKSSVRHTQPSPVSRSKLQ 2483
Query: 80 HLN-----------NENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGGSSSVKKA 128
L +E+ S T + P + P PPA +S + GG+ +
Sbjct: 2484 ELRALSMPDLDKLCSEDYSAGPSAVLFKTELEITPRRSPGPPAGGVSCPEKGGNRACPGG 2543
Query: 129 PHPAVTSAGTP 139
P ++A TP
Sbjct: 2544 SGPKTSAAETP 2554
>gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 32.7 bits (73), Expect = 0.41
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 84 ENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAP 129
+ L+KSL + + T P P PP PP ++ G + G ++ + P
Sbjct: 177 KELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQKPGRKDTITEKP 222
>gi|169201331 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 32.7 bits (73), Expect = 0.41
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 84 ENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAP 129
+ L+KSL + + T P P PP PP ++ G + G ++ + P
Sbjct: 177 KELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQKPGRKDTITEKP 222
>gi|239744207 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 32.7 bits (73), Expect = 0.41
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 84 ENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTGGSSSVKKAP 129
+ L+KSL + + T P P PP PP ++ G + G ++ + P
Sbjct: 177 KELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQKPGRKDTITEKP 222
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 0.41
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 56 VAVSAKKKNSKKVQPNSSYQNNIT-------HLNNENLKKSLSCANLSTFAQPPPAQPPA 108
+A S+K K+ N+S + L L +S+SC N+S P P+
Sbjct: 336 LATSSKGGIGSKIGSNNSTTPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVP 395
Query: 109 PPASQLSGSQTGGSSSVKKAPHPAVTS 135
+SQLSG+ G+S + TS
Sbjct: 396 GSSSQLSGNGNSGTSGPSGSTTSKTTS 422
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 0.41
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 56 VAVSAKKKNSKKVQPNSSYQNNIT-------HLNNENLKKSLSCANLSTFAQPPPAQPPA 108
+A S+K K+ N+S + L L +S+SC N+S P P+
Sbjct: 336 LATSSKGGIGSKIGSNNSTTPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVP 395
Query: 109 PPASQLSGSQTGGSSSVKKAPHPAVTS 135
+SQLSG+ G+S + TS
Sbjct: 396 GSSSQLSGNGNSGTSGPSGSTTSKTTS 422
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 32.7 bits (73), Expect = 0.41
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 23/134 (17%)
Query: 48 SVLPWKRIVAVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQP- 106
S+ PW I S+ K K+ P + + + +L + LS ++PP A P
Sbjct: 459 SLHPWYGITPTSSPK-TKKRPAPRAPSASPL----------ALHASRLS-HSEPPSATPS 506
Query: 107 PAPPASQLSG---SQTGGSSSV------KKAPHPAVTSAGTPKRVIVQASTSELLRCLGE 157
PA LS SQT G+ + K + PAV + GTP V ST+ L GE
Sbjct: 507 PALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNP-VSLSTNSSLASSGE 565
Query: 158 FLCRRCYRLKHLSP 171
+ R ++ SP
Sbjct: 566 LVEPRVEQMPQASP 579
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 19/159 (11%)
Query: 14 ATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSAKKKNSKKVQPNSS 73
A L G+ T ++A+ A+ ++H + ++R A S+ ++ +Q S
Sbjct: 20 AGLLGGGSVTPRVHSAIVERLRARIAVCRQHHLSCEGRYERGRAESSDRERESTLQLLSL 79
Query: 74 YQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPA----------PPASQ---------L 114
Q+ K+ + A +T PPPA PPA PP L
Sbjct: 80 VQHGQGARKAGKHTKATATAATTTAPPPPPAAPPAASQAAATAAPPPPPDYHHHHQQHLL 139
Query: 115 SGSQTGGSSSVKKAPHPAVTSAGTPKRVIVQASTSELLR 153
+ S GGS + P ++ G + + A L R
Sbjct: 140 NSSNNGGSGGINGEQQPPASTPGDQRNSALIALQGSLKR 178
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 32.3 bits (72), Expect = 0.54
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 100 QPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTP 139
QPPP PP P A+ S + S ++ P PA A P
Sbjct: 33 QPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQP 72
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 32.3 bits (72), Expect = 0.54
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 100 QPPPAQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTP 139
QPPP PP P A+ S + S ++ P PA A P
Sbjct: 33 QPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQP 72
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 32.0 bits (71), Expect = 0.71
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 57 AVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSG 116
+ SAK + K +N THL+N+ K +S N + +PPP P+S S
Sbjct: 1447 STSAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSS 1506
Query: 117 S 117
+
Sbjct: 1507 T 1507
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 32.0 bits (71), Expect = 0.71
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 57 AVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSG 116
+ SAK + K +N THL+N+ K +S N + +PPP P+S S
Sbjct: 753 STSAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSS 812
Query: 117 S 117
+
Sbjct: 813 T 813
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 32.0 bits (71), Expect = 0.71
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 57 AVSAKKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSG 116
+ SAK + K +N THL+N+ K +S N + +PPP P+S S
Sbjct: 1557 STSAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSS 1616
Query: 117 S 117
+
Sbjct: 1617 T 1617
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.0 bits (71), Expect = 0.71
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 96 STFAQPP--PAQPP--APPASQLSGSQTGGSSSVKKAPHPAVTSAGTPKRV 142
+T A+PP PA PP AP + +Q GGS+ AP PA AG P V
Sbjct: 278 ATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA---AGGPAGV 325
>gi|18765741 snail 1 homolog [Homo sapiens]
Length = 264
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 104 AQPPAPPASQLSGSQTGGSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRC 163
+QPP+PP+ S + SS++ + A G + + Q S ++ L+ F C+ C
Sbjct: 100 SQPPSPPSPAPSSFSSTSVSSLEAEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYC 159
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 101 PPPAQPPAPPASQLSGSQTGGSSSVKKAPHPA-----VTSAGTPKRVIVQASTSELLRCL 155
PPP+ +PP + G+ TG SS AP P+ TSA TP ST ++R
Sbjct: 4270 PPPSTTTSPPGTPTRGTTTGSSS----APTPSTVQTTTTSAWTP--TPTPLSTPSIIRTT 4323
Query: 156 G 156
G
Sbjct: 4324 G 4324
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 101 PPPAQPPAPPASQLSGSQTGGSSSVKKAPHPA-----VTSAGTPKRVIVQASTSELLRCL 155
PPP+ +PP + G+ TG SS AP P+ TSA TP ST ++R
Sbjct: 1730 PPPSTTTSPPGTPTRGTTTGSSS----APTPSTVQTTTTSAWTP--TPTPLSTPSIIRTT 1783
Query: 156 G 156
G
Sbjct: 1784 G 1784
>gi|21536357 TBP-associated factor 6 isoform delta [Homo sapiens]
Length = 667
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 99 AQPPPAQPPAPPASQLSGSQ-TGGSSSVKKAPHPAVTSAGTPK 140
+ P P PPA S LSGS GG +P PA GTPK
Sbjct: 613 SHPSPVPPPASSPSPLSGSALCGGKQEAGDSPPPA---PGTPK 652
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,305,196
Number of Sequences: 37866
Number of extensions: 581205
Number of successful extensions: 7044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 6574
Number of HSP's gapped (non-prelim): 496
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.