Search of human proteins with 40354201

Search of human proteins with 40354201

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40354201 putative c-Myc-responsive isoform 2 [Homo sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40354201 putative c-Myc-responsive isoform 2 [Homo sapiens]        303   3e-83
gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens]         253   5e-68
gi|122114658 hypothetical protein LOC23053 [Homo sapiens]              30   0.74 
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]          29   1.6  
gi|57165366 G4 protein [Homo sapiens]                                  28   3.7  
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]              27   4.8  
gi|45593136 LISCH protein isoform 3 [Homo sapiens]                     27   6.2  
gi|45545424 LISCH protein isoform 2 [Homo sapiens]                     27   6.2  
gi|45505163 LISCH protein isoform 1 [Homo sapiens]                     27   6.2  
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ...    27   8.2  

>gi|40354201 putative c-Myc-responsive isoform 2 [Homo sapiens]
          Length = 148

 Score =  303 bits (776), Expect = 3e-83
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60
           MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA
Sbjct: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60

Query: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120
           ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR
Sbjct: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120

Query: 121 PQSGRGEHPKPPSWLSMDPALSSFPGGL 148
           PQSGRGEHPKPPSWLSMDPALSSFPGGL
Sbjct: 121 PQSGRGEHPKPPSWLSMDPALSSFPGGL 148


>gi|5454002 putative c-Myc-responsive isoform 1 [Homo sapiens]
          Length = 174

 Score =  253 bits (645), Expect = 5e-68
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60
           MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA
Sbjct: 1   MAAAMVPGRSESWERGEPGRPALYFCGSIRGGREDRTLYERIVSRLRRFGTVLTEHVAAA 60

Query: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120
           ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR
Sbjct: 61  ELGARGEEAAGGDRLIHEQDLEWLQQADVVVAEVTQPSLGVGYELGRAVAFNKRILCLFR 120

Query: 121 PQSGR 125
           PQSGR
Sbjct: 121 PQSGR 125


>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
          Length = 1842

 Score = 30.0 bits (66), Expect = 0.74
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 13  WERGEPGRPALYFCGSIRGGRE-DRTLYERIVSRLRRFGTV---LTEHVAAAELGARGEE 68
           W R  P RP     G +   R+  R L      R +  GT    L E V +++ G R   
Sbjct: 508 WARALPSRPGASRSGGLEESRDRPRPLPTEPAVRPKEPGTKRKGLGEGVPSSQRGPRRLS 567

Query: 69  AAGGDRLIHE 78
           A GGD+ +H+
Sbjct: 568 AEGGDKALHK 577


>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
          Length = 845

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 123 SGRGEHPKPPSWLSMDPALSSFPGG 147
           SG G  P PPS  ++ P  SS PGG
Sbjct: 496 SGGGTGPHPPSGTTLRPPTSSTPGG 520


>gi|57165366 G4 protein [Homo sapiens]
          Length = 294

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 7   PGRSES---WERGEPGRPALYFCG 27
           PGR E    W RGEPG P+ Y  G
Sbjct: 148 PGRREKLLGWLRGEPGAPSRYLGG 171


>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
          Length = 433

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 31  GGREDRTLYERIVSRLRRFGTVLTEHVAAAELGARGEEAAGGDRLIHEQDLEWLQQAD 88
           G R  R L+E  ++R ++   +  + + A   GAR ++ AGGD  +    LE + Q D
Sbjct: 253 GARMVRELFE--MARTKKACLIFFDEIDAIG-GARFDDGAGGDNEVQRTMLELINQLD 307


>gi|45593136 LISCH protein isoform 3 [Homo sapiens]
          Length = 581

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 129 PKPPSWLSMDPALSSFPGG 147
           P PP+ + M PA + +PGG
Sbjct: 269 PPPPAMIPMGPAYNGYPGG 287


>gi|45545424 LISCH protein isoform 2 [Homo sapiens]
          Length = 649

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 129 PKPPSWLSMDPALSSFPGG 147
           P PP+ + M PA + +PGG
Sbjct: 337 PPPPAMIPMGPAYNGYPGG 355


>gi|45505163 LISCH protein isoform 1 [Homo sapiens]
          Length = 630

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 129 PKPPSWLSMDPALSSFPGG 147
           P PP+ + M PA + +PGG
Sbjct: 318 PPPPAMIPMGPAYNGYPGG 336


>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
           sapiens]
          Length = 570

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 13  WERGEPGRPALYFCGSIRGGREDR---TL-----YERIVSRL--RRFGTVLTEH--VAAA 60
           W  G  GRP    C       E R   TL      +R++ R+   R G  +  H   +A 
Sbjct: 83  WRNGRGGRPRARLCSGWTAAEEARRNPTLGGLLGRQRLLLRMGGGRLGAPMERHGRASAT 142

Query: 61  ELGARGEEAAG 71
            + + GE+AAG
Sbjct: 143 SVSSAGEQAAG 153


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,700,245
Number of Sequences: 37866
Number of extensions: 284882
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 10
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.