Guide to the Human Genome
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Name: XAF1 Sequence: fasta or formatted (301aa) NCBI GI: 40288191
Description:

XIAP associated factor 1 isoform 1

Referenced in:

Protease Inhibitors

Other entries for this name:
alt prot [282aa] XIAP associated factor 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         12           2
 C cysteine            7.3         22           2
 D aspartate           2.7          8           1
 E glutamate           9.3         28           2
 F phenylalanine       3.7         11           1
 G glycine             4.0         12           1
 H histidine           4.7         14           2
 I isoleucine          3.0          9           1
 K lysine              8.0         24           2
 L leucine             8.3         25           2
 M methionine          3.7         11           1
 N asparagine          3.7         11           1
 P proline             6.6         20           1
 Q glutamine           6.3         19           2
 R arginine            6.6         20           2
 S serine              9.3         28           3
 T threonine           3.0          9           1
 V valine              3.7         11           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XIAP associated factor 1 isoform 1 
XAF1                  0.915   XIAP associated factor 1 isoform 2 
TRAFD1                0.163   TRAF-type zinc finger domain containing 1 
TRAFD1                0.163   TRAF-type zinc finger domain containing 1 
TRAF6                 0.050   TNF receptor-associated factor 6 
TRAF6                 0.050   TNF receptor-associated factor 6 
TRAF4                 0.046   TNF receptor-associated factor 4 
ZNF398                0.041   zinc finger 398 isoform b 
ZNF398                0.041   zinc finger 398 isoform a 
ZNF623                0.041   zinc finger protein 623 isoform 1 
ZNF623                0.041   zinc finger protein 623 isoform 2 
ZNF596                0.039   zinc finger protein 596 
ZNF596                0.039   zinc finger protein 596 
ZNF596                0.039   zinc finger protein 596 
ZNF611                0.036   zinc finger protein 611 isoform b 
ZNF611                0.036   zinc finger protein 611 isoform a 
ZNF611                0.036   zinc finger protein 611 isoform a 
ZNF611                0.036   zinc finger protein 611 isoform a 
ZNF286B               0.036   zinc finger protein 286B 
ZNF286A               0.034   zinc finger protein 286 
ZNF286A               0.034   zinc finger protein 286 
ZNF613                0.034   zinc finger protein 613 isoform 1 
ZNF613                0.034   zinc finger protein 613 isoform 2 
ZFP62                 0.033   zinc finger protein 62 homolog 
TRAF5                 0.033   TNF receptor-associated factor 5 
TRAF5                 0.033   TNF receptor-associated factor 5 
TRAF5                 0.033   TNF receptor-associated factor 5 
ZNF595                0.033   zinc finger protein 595 
ZFP14                 0.033   zinc finger protein 14-like 
ZNF175                0.033   zinc finger protein 175 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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