NHLRC1 27425

Name: NHLRC1	Sequence: fasta or formatted (395aa)		NCBI GI: 40255283
Description: NHL repeat containing 1		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 37 2 C cysteine 4.3 17 1 D aspartate 4.8 19 1 E glutamate 4.6 18 2 F phenylalanine 4.3 17 2 G glycine 9.1 36 3 H histidine 4.6 18 2 I isoleucine 3.5 14 1 K lysine 3.5 14 1 L leucine 10.4 41 2 M methionine 1.0 4 1 N asparagine 1.8 7 1 P proline 5.6 22 1 Q glutamine 3.0 12 2 R arginine 5.6 22 3 S serine 6.3 25 3 T threonine 6.3 25 2 V valine 10.1 40 4 W tryptophan 1.0 4 1 Y tyrosine 0.8 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 NHL repeat containing 1 TRIM32 0.068 tripartite motif-containing 32 TRIM32 0.068 tripartite motif-containing 32 TRIM71 0.055 tripartite motif-containing 71 TRIM3 0.047 tripartite motif-containing 3 TRIM3 0.047 tripartite motif-containing 3 TRIM2 0.042 tripartite motif-containing 2 isoform 2 TRIM2 0.042 tripartite motif-containing 2 isoform 1 LOC401934 0.031 PREDICTED: hypothetical protein LOC401934 0.031 PREDICTED: hypothetical protein LOC401934 0.031 PREDICTED: hypothetical protein TRIM50 0.028 tripartite motif protein 50A TRIM23 0.025 ADP-ribosylation factor domain protein 1 isoform gam... TRIM23 0.025 ADP-ribosylation factor domain protein 1 isoform bet... TRIM23 0.025 ADP-ribosylation factor domain protein 1 isoform alph... SH3RF3 0.024 SH3 domain containing ring finger 3 RNF152 0.024 ring finger protein 152 RNF208 0.024 ring finger protein 208 RNF182 0.024 ring finger protein 182 LOC646862 0.019 PREDICTED: hypothetical protein LOC646862 LOC646862 0.019 PREDICTED: hypothetical protein LOC646862 LOC646862 0.019 PREDICTED: hypothetical protein LOC646862 FLJ36208 0.019 hypothetical protein LOC283948 TRIM74 0.018 tripartite motif-containing 74 TRIM73 0.018 tripartite motif-containing 73 RNF222 0.018 ring finger protein 222 RNF222 0.018 PREDICTED: ring finger protein 222 RNF222 0.018 PREDICTED: ring finger protein 222 RNF222 0.018 PREDICTED: ring finger protein 222 TRIM28 0.018 tripartite motif-containing 28 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.