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Search of human proteins with 38679914
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38679914 mitochondrial distribution and morphology 20 [Homo
sapiens]
(972 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38679914 mitochondrial distribution and morphology 20 [Homo s... 1935 0.0
gi|83415184 transmembrane and tetratricopeptide repeat containin... 43 0.002
gi|153082755 interferon-induced protein with tetratricopeptide r... 36 0.15
gi|118766328 transmembrane and tetratricopeptide repeat containi... 35 0.34
gi|118766330 transmembrane and tetratricopeptide repeat containi... 35 0.34
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 34 0.76
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 34 0.76
gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog... 33 0.99
gi|31542980 interferon-induced protein with tetratricopeptide re... 33 1.3
gi|72534658 interferon-induced protein with tetratricopeptide re... 33 1.3
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 33 1.3
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 33 1.7
gi|109659847 filamin A interacting protein 1-like isoform 3 [Hom... 33 1.7
gi|109659845 filamin A interacting protein 1-like isoform 1 [Hom... 33 1.7
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 2.2
gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Hom... 32 2.9
gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Hom... 32 2.9
gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sap... 32 2.9
gi|156071465 Rho GTPase activating protein 4 [Homo sapiens] 32 3.8
gi|93141214 sodium channel, voltage-gated, type II, alpha isofor... 31 4.9
gi|93141212 sodium channel, voltage-gated, type II, alpha isofor... 31 4.9
gi|93141210 sodium channel, voltage-gated, type II, alpha isofor... 31 4.9
gi|21361639 DIPB protein [Homo sapiens] 31 4.9
gi|73695475 protein BAP28 [Homo sapiens] 31 4.9
gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo... 31 6.4
gi|109659849 filamin A interacting protein 1-like isoform 2 [Hom... 30 8.4
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa... 30 8.4
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap... 30 8.4
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ... 30 8.4
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ... 30 8.4
>gi|38679914 mitochondrial distribution and morphology 20 [Homo
sapiens]
Length = 972
Score = 1936 bits (5014), Expect = 0.0
Identities = 972/972 (100%), Positives = 972/972 (100%)
Query: 1 MATRGHVQDPNDRRLRPIYDYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGK 60
MATRGHVQDPNDRRLRPIYDYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGK
Sbjct: 1 MATRGHVQDPNDRRLRPIYDYLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGK 60
Query: 61 QEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLF 120
QEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLF
Sbjct: 61 QEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLF 120
Query: 121 MAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERM 180
MAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERM
Sbjct: 121 MAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERM 180
Query: 181 VEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAMYK 240
VEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAMYK
Sbjct: 181 VEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAMYK 240
Query: 241 KLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGEHSLEGEVHYSAE 300
KLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGEHSLEGEVHYSAE
Sbjct: 241 KLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGEHSLEGEVHYSAE 300
Query: 301 KAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDEYKLGDPEELMFQYFKKFG 360
KAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDEYKLGDPEELMFQYFKKFG
Sbjct: 301 KAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCNDEYKLGDPEELMFQYFKKFG 360
Query: 361 DKPCCFTDLKVFVDLLPATQCTKFINQLLGVVPLSTPTEDKLALPADIRALQQHLCVVQL 420
DKPCCFTDLKVFVDLLPATQCTKFINQLLGVVPLSTPTEDKLALPADIRALQQHLCVVQL
Sbjct: 361 DKPCCFTDLKVFVDLLPATQCTKFINQLLGVVPLSTPTEDKLALPADIRALQQHLCVVQL 420
Query: 421 TRLLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWR 480
TRLLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWR
Sbjct: 421 TRLLGLYHTMDKNQKLSVVRELMLRYQHGLEFGKTCLKTELQFSDYYCLLAVHALIDVWR 480
Query: 481 ETGDETTVWQALTLLEEGLTHSPSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHD 540
ETGDETTVWQALTLLEEGLTHSPSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHD
Sbjct: 481 ETGDETTVWQALTLLEEGLTHSPSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHD 540
Query: 541 TIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYIIQAYKYGAFEKIPEFIAFR 600
TIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYIIQAYKYGAFEKIPEFIAFR
Sbjct: 541 TIGYLLTRYAESLGQYAAASQSCNFALRFFHSNQKDTSEYIIQAYKYGAFEKIPEFIAFR 600
Query: 601 NRLNNSLHFAQVRTERMLLDLLLEANISTSLAESIKSMNLRPEEDDIPWEDLRDNRDLNV 660
NRLNNSLHFAQVRTERMLLDLLLEANISTSLAESIKSMNLRPEEDDIPWEDLRDNRDLNV
Sbjct: 601 NRLNNSLHFAQVRTERMLLDLLLEANISTSLAESIKSMNLRPEEDDIPWEDLRDNRDLNV 660
Query: 661 FFSWDPKDRDVSEEHKKLSLEEETLWLRIRSLTLRLISGLPSLNHPVEPKNSEKTAENGV 720
FFSWDPKDRDVSEEHKKLSLEEETLWLRIRSLTLRLISGLPSLNHPVEPKNSEKTAENGV
Sbjct: 661 FFSWDPKDRDVSEEHKKLSLEEETLWLRIRSLTLRLISGLPSLNHPVEPKNSEKTAENGV 720
Query: 721 SSRIDILRLLLQQLEATLETGKRFIEKDIQYPFLGPVPTRMGGFFNSGCSQCQISSFYLV 780
SSRIDILRLLLQQLEATLETGKRFIEKDIQYPFLGPVPTRMGGFFNSGCSQCQISSFYLV
Sbjct: 721 SSRIDILRLLLQQLEATLETGKRFIEKDIQYPFLGPVPTRMGGFFNSGCSQCQISSFYLV 780
Query: 781 NDIYELDTSGLEDTMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDGNLKTHPTLLEN 840
NDIYELDTSGLEDTMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDGNLKTHPTLLEN
Sbjct: 781 NDIYELDTSGLEDTMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDGNLKTHPTLLEN 840
Query: 841 LVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKETSIIMPPVFTSFQDYVTGLQTL 900
LVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKETSIIMPPVFTSFQDYVTGLQTL
Sbjct: 841 LVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKETSIIMPPVFTSFQDYVTGLQTL 900
Query: 901 ISNVVDHIKGLETHLIALKLEELILEDTSLSPEERKFSKTVQGKVQSSYLHSLLEMGELL 960
ISNVVDHIKGLETHLIALKLEELILEDTSLSPEERKFSKTVQGKVQSSYLHSLLEMGELL
Sbjct: 901 ISNVVDHIKGLETHLIALKLEELILEDTSLSPEERKFSKTVQGKVQSSYLHSLLEMGELL 960
Query: 961 KKRLETTKKLKI 972
KKRLETTKKLKI
Sbjct: 961 KKRLETTKKLKI 972
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 42.7 bits (99), Expect = 0.002
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 47/249 (18%)
Query: 23 DNGNNKMAIQQADKLLKKHKDLHCAKVLKAIG--LQRTGKQEEAFTLAQEVAALEPTDDN 80
D KM Q+A +L +H + L +G L+ K+EEA TL ++ P +
Sbjct: 421 DTAEAKMYYQRALQLHPQHN-----RALFNLGNLLKSQEKKEEAITLLKDSIKYGPEFAD 475
Query: 81 SLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALY 140
+ +L L E R + ++Y+ +K P+S + H++ + G + + +A Y
Sbjct: 476 AYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTG----LPEKAVAHY 531
Query: 141 -KIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELY 199
+ + +P + ++++L S + ++++ + +R ++ K + + LY
Sbjct: 532 QQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWY----KRALQVAHKAEILSPLG--ALY 585
Query: 200 YMILERLGKYQEALDVI-------------------------RGKLGEKLTSEIQSRENK 234
Y G+Y+EAL + + K EK+T+ I S E
Sbjct: 586 Y----NTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETG 641
Query: 235 CMAMYKKLS 243
C+ Y+ LS
Sbjct: 642 CLECYRLLS 650
Score = 39.7 bits (91), Expect = 0.014
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGL--QRTGKQEEAFTLAQEVAALEPTD 78
Y G N MA + + L+ H A++L +G TG+ EEA + QE AAL+P+
Sbjct: 552 YRSLGENSMAEEWYKRALQV---AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQ 608
Query: 79 DNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMA 138
AL + M + + K+ V + E + L Y++ + K A
Sbjct: 609 RELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDK 668
Query: 139 LYKIVPKNP 147
++ PK+P
Sbjct: 669 ALQLKPKDP 677
>gi|153082755 interferon-induced protein with tetratricopeptide
repeats 2 [Homo sapiens]
Length = 472
Score = 36.2 bits (82), Expect = 0.15
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 31 IQQADKLLKKHKDLHCAKVLKAIGLQRTGKQE-EAFTLAQEVAALEPTDDNSLQALTILY 89
++QA +L ++ L LK ++ G++E E L +E P + L++ Y
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257
Query: 90 REMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAY-ARVGEYKKMQQAGM 137
R P+ +L + A++ +PN+ H + Y A+V + +++ GM
Sbjct: 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306
>gi|118766328 transmembrane and tetratricopeptide repeat containing
4 isoform 2 [Homo sapiens]
Length = 741
Score = 35.0 bits (79), Expect = 0.34
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 55 LQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEE 114
L TG +A + +E L P D + + +L + + + + L+ A+K PN+
Sbjct: 628 LDNTGNLAQAEAVGREALELIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNAAS 687
Query: 115 YHSHLFMAYARVG 127
YH +L + Y R G
Sbjct: 688 YHGNLAVLYHRWG 700
>gi|118766330 transmembrane and tetratricopeptide repeat containing
4 isoform 1 [Homo sapiens]
Length = 760
Score = 35.0 bits (79), Expect = 0.34
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 55 LQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEE 114
L TG +A + +E L P D + + +L + + + + L+ A+K PN+
Sbjct: 647 LDNTGNLAQAEAVGREALELIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNAAS 706
Query: 115 YHSHLFMAYARVG 127
YH +L + Y R G
Sbjct: 707 YHGNLAVLYHRWG 719
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 33.9 bits (76), Expect = 0.76
Identities = 28/125 (22%), Positives = 52/125 (41%)
Query: 23 DNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSL 82
+ GN + A++ K L+ + A A LQ+ GK +EA +E + PT ++
Sbjct: 329 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 388
Query: 83 QALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKI 142
+ +EM + + Y A++ P + HS+L + G + + K+
Sbjct: 389 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 448
Query: 143 VPKNP 147
P P
Sbjct: 449 KPDFP 453
Score = 33.1 bits (74), Expect = 1.3
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDN 80
Y + G +AI + ++ A A L+ G EA L PT +
Sbjct: 259 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 318
Query: 81 SLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALY 140
SL L + RE E +LY A++ P HS+L + G K+Q+A M
Sbjct: 319 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYK 375
Query: 141 KIVPKNPYY 149
+ + +P +
Sbjct: 376 EAIRISPTF 384
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 33.9 bits (76), Expect = 0.76
Identities = 28/125 (22%), Positives = 52/125 (41%)
Query: 23 DNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSL 82
+ GN + A++ K L+ + A A LQ+ GK +EA +E + PT ++
Sbjct: 339 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 398
Query: 83 QALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKI 142
+ +EM + + Y A++ P + HS+L + G + + K+
Sbjct: 399 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 458
Query: 143 VPKNP 147
P P
Sbjct: 459 KPDFP 463
Score = 33.1 bits (74), Expect = 1.3
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 21 YLDNGNNKMAIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDN 80
Y + G +AI + ++ A A L+ G EA L PT +
Sbjct: 269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 328
Query: 81 SLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALY 140
SL L + RE E +LY A++ P HS+L + G K+Q+A M
Sbjct: 329 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG---KLQEALMHYK 385
Query: 141 KIVPKNPYY 149
+ + +P +
Sbjct: 386 EAIRISPTF 394
>gi|51871374 UTP14, U3 small nucleolar ribonucleoprotein, homolog C
[Homo sapiens]
Length = 766
Score = 33.5 bits (75), Expect = 0.99
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 29/168 (17%)
Query: 57 RTGKQEEAFTLAQEVAA------LEPTDDNSLQALTILYREMHRPEL-----VTKLYEAA 105
RT ++E F L + L P + SLQA+++ +MHR EL + YEA
Sbjct: 180 RTPLEQEIFNLLHKNKQPVTDPLLTPMEKASLQAMSLEEAKMHRAELQRARALQSYYEAK 239
Query: 106 VKKVP--NSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISA 163
+K S++YH + G+ KK + L K+ NP M I
Sbjct: 240 ARKEKKIKSKKYHK-----VVKKGKAKKALKEFEQLQKV---NPTVALEEMEKI------ 285
Query: 164 QDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQE 211
EN + L + K K I A+ ++E + E+L K +E
Sbjct: 286 --ENARMMERMSLKHQNSGKWAKSKAIMAKYDLEARQAMQEQLAKNKE 331
>gi|31542980 interferon-induced protein with tetratricopeptide
repeats 3 [Homo sapiens]
Length = 490
Score = 33.1 bits (74), Expect = 1.3
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 21 YLDNGNNKM----AIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEP 76
+LDN K ++QA +L D KVL + LQ+ K+ E +E P
Sbjct: 182 HLDNHPEKQFSTDVLKQAIEL---SPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSP 238
Query: 77 TDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAG 136
+ L++ YR + +L++ ++ PN+ + + Y + ++MQ G
Sbjct: 239 CQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYK--AKVRQMQNTG 296
>gi|72534658 interferon-induced protein with tetratricopeptide
repeats 3 [Homo sapiens]
Length = 490
Score = 33.1 bits (74), Expect = 1.3
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 21 YLDNGNNKM----AIQQADKLLKKHKDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEP 76
+LDN K ++QA +L D KVL + LQ+ K+ E +E P
Sbjct: 182 HLDNHPEKQFSTDVLKQAIEL---SPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSP 238
Query: 77 TDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAG 136
+ L++ YR + +L++ ++ PN+ + + Y + ++MQ G
Sbjct: 239 CQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYK--AKVRQMQNTG 296
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 33.1 bits (74), Expect = 1.3
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 176 LAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALD----VIRGKLGEKLTSEIQSR 231
++E++ + + D + E+E + ERL +++ D ++ KL L ++ +
Sbjct: 912 VSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIK 971
Query: 232 ENKCMAMYKKLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGE-HS 290
E K A+ +L N R+ L +++ D R+++ SPP GE +
Sbjct: 972 EEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEE-RMVQS--SPPISGEDNK 1028
Query: 291 LEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCN 340
E E + + +K ++DR+ E +++ L+ A +++L +Q N
Sbjct: 1029 WERESQETTRELLK-VKDRLIEVERNNATLQAEKQALKTQLKQLETQNNN 1077
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 32.7 bits (73), Expect = 1.7
Identities = 36/171 (21%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 176 LAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALD-----VIRGKLGEKLTSEIQS 230
++E++ + + D + E+E + ERL +++ D ++ KL L ++
Sbjct: 912 VSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESKLESTLKKSLEI 971
Query: 231 RENKCMAMYKKLSRWPECNALSRRLLLKNSDDWQFYLTYFDSVFRLIEEAWSPPAEGE-H 289
+E K A+ +L N R+ L +++ D R+++ SPP GE +
Sbjct: 972 KEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEE-RMVQS--SPPISGEDN 1028
Query: 290 SLEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQGCN 340
E E + + +K ++DR+ E +++ L+ A +++L +Q N
Sbjct: 1029 KWERESQETTRELLK-VKDRLIEVERNNATLQAEKQALKTQLKQLETQNNN 1078
>gi|109659847 filamin A interacting protein 1-like isoform 3 [Homo
sapiens]
Length = 1133
Score = 32.7 bits (73), Expect = 1.7
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 60 KQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHL 119
K++ TL +E+ L+ AL ++ + +T + + N++E H+ L
Sbjct: 221 KEKRVTTLKEELTKLKSF------ALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKL 274
Query: 120 FMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQD-ENLSKTMFLPLAE 178
+A ARV E +Q L K + F IM ++ +D +N L
Sbjct: 275 ALAEARVQE---EEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALS 331
Query: 179 RMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAM 238
R ++++ + ++ +AE EL I E++ K + I ++ E+L + E K +
Sbjct: 332 RQIDELEETNRSLRKAEEEL-QDIKEKISKGEYGNAGIMAEV-EELRKRVLDMEGKDEEL 389
Query: 239 YKKLSRWPECNALSRRLLLKNSD 261
K + + N R L++ D
Sbjct: 390 IKMEEQCRDLNKRLERETLQSKD 412
>gi|109659845 filamin A interacting protein 1-like isoform 1 [Homo
sapiens]
Length = 1135
Score = 32.7 bits (73), Expect = 1.7
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 12/203 (5%)
Query: 60 KQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHL 119
K++ TL +E+ L+ AL ++ + +T + + N++E H+ L
Sbjct: 221 KEKRVTTLKEELTKLKSF------ALMVVDEQQRLTAQLTLQRQKIQELTTNAKETHTKL 274
Query: 120 FMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQD-ENLSKTMFLPLAE 178
+A ARV E +Q L K + F IM ++ +D +N L
Sbjct: 275 ALAEARVQE---EEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALS 331
Query: 179 RMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQSRENKCMAM 238
R ++++ + ++ +AE EL I E++ K + I ++ E+L + E K +
Sbjct: 332 RQIDELEETNRSLRKAEEEL-QDIKEKISKGEYGNAGIMAEV-EELRKRVLDMEGKDEEL 389
Query: 239 YKKLSRWPECNALSRRLLLKNSD 261
K + + N R L++ D
Sbjct: 390 IKMEEQCRDLNKRLERETLQSKD 412
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.3 bits (72), Expect = 2.2
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 600 RNRLNNSLHFAQVRTERMLLDLLLEANISTSLAESIKSMNLRPEEDDIPWEDLRDNRDLN 659
+ RL L Q + ++ LD+L + L+E KS L+ E+ + ED++ + N
Sbjct: 1283 KERLEQDLQQMQAKVRKLELDILPLQEANAELSE--KSGMLQAEKKLLE-EDVKRWKARN 1339
Query: 660 VFFSWDPKDRDVSEEHKKLSLEEETLWLRIRSLT 693
KD D +EE++KL E+E RI+ LT
Sbjct: 1340 QHLVSQQKDPD-TEEYRKLLSEKEVHTKRIQQLT 1372
>gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 756 PVPTRMGGFFNSGCSQCQI--SSFYLVNDIYELDTSGLEDTME-IQERIENSFKSLLDQL 812
P + GFF S Q+ + +Y+V E D + L D I ++ +K+ L L
Sbjct: 923 PYKQKQSGFFLENKSTYQLWKAGYYIVVYFPEKDITILWDRKTTIHIKVGPQWKNKLSGL 982
Query: 813 KDVFSKCKGDLLEVKDGNLKTHPTLLENLVFFVETISVILWVSSYCES---VLRPYKLNL 869
F KC + + + NL+ + N F ++ W CES ++P + +
Sbjct: 983 CGNFDKCTSNDMTTSN-NLE-----VRNARVFGDS-----WALGQCESPDETIKPCEAHQ 1031
Query: 870 QKKKKKKKETSIIMPPVFTSFQDYV 894
K KKE SI+ +F S ++ +
Sbjct: 1032 NKFPYAKKECSILYSDIFASCRNVI 1056
>gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 756 PVPTRMGGFFNSGCSQCQI--SSFYLVNDIYELDTSGLEDTME-IQERIENSFKSLLDQL 812
P + GFF S Q+ + +Y+V E D + L D I ++ +K+ L L
Sbjct: 923 PYKQKQSGFFLENKSTYQLWKAGYYIVVYFPEKDITILWDRKTTIHIKVGPQWKNKLSGL 982
Query: 813 KDVFSKCKGDLLEVKDGNLKTHPTLLENLVFFVETISVILWVSSYCES---VLRPYKLNL 869
F KC + + + NL+ + N F ++ W CES ++P + +
Sbjct: 983 CGNFDKCTSNDMTTSN-NLE-----VRNARVFGDS-----WALGQCESPDETIKPCEAHQ 1031
Query: 870 QKKKKKKKETSIIMPPVFTSFQDYV 894
K KKE SI+ +F S ++ +
Sbjct: 1032 NKFPYAKKECSILYSDIFASCRNVI 1056
>gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sapiens]
Length = 2250
Score = 32.0 bits (71), Expect = 2.9
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 756 PVPTRMGGFFNSGCSQCQI--SSFYLVNDIYELDTSGLEDTME-IQERIENSFKSLLDQL 812
P + GFF S Q+ + +Y+V E D + L D I ++ +K+ L L
Sbjct: 923 PYKQKQSGFFLENKSTYQLWKAGYYIVVYFPEKDITILWDRKTTIHIKVGPQWKNKLSGL 982
Query: 813 KDVFSKCKGDLLEVKDGNLKTHPTLLENLVFFVETISVILWVSSYCES---VLRPYKLNL 869
F KC + + + NL+ + N F ++ W CES ++P + +
Sbjct: 983 CGNFDKCTSNDMTTSN-NLE-----VRNARVFGDS-----WALGQCESPDETIKPCEAHQ 1031
Query: 870 QKKKKKKKETSIIMPPVFTSFQDYV 894
K KKE SI+ +F S ++ +
Sbjct: 1032 NKFPYAKKECSILYSDIFASCRNVI 1056
>gi|156071465 Rho GTPase activating protein 4 [Homo sapiens]
Length = 946
Score = 31.6 bits (70), Expect = 3.8
Identities = 45/196 (22%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 48 KVLKAIGLQ---RTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKLYEA 104
K+ + GLQ T +E + L++++ LE + + L L M R V Y
Sbjct: 6 KLRRERGLQAEYETQVKEMRWQLSEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSR 65
Query: 105 AVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPK--NPYYFWSVMSLIMQSIS 162
++K+ +E + S R+G ++ Q ++ P +P + W+V+ + S
Sbjct: 66 GLEKL--AERFSSR----GGRLGSSREHQS-----FRKEPSLLSPLHCWAVLLQHTRQQS 114
Query: 163 AQDENLSKTMFLPLAERM------VEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVI 216
+ LS+ + PLA+R+ V ++VK+ + + E +L +LE + + Q A
Sbjct: 115 RESAALSEVLAGPLAQRLSHIAEDVGRLVKKSR---DLEQQLQDELLEVVSELQTAKKTY 171
Query: 217 RGKLGEKLTSEIQSRE 232
+ E + +E + RE
Sbjct: 172 QAYHMESVNAEAKLRE 187
>gi|93141214 sodium channel, voltage-gated, type II, alpha isoform 2
[Homo sapiens]
Length = 2005
Score = 31.2 bits (69), Expect = 4.9
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 774 ISSFYLVNDIYELDTSGLED----TMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDG 829
+ SFYL+N I + E+ T+E E+ E F+ +L+QLK + +
Sbjct: 411 LGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAE 470
Query: 830 NLKTHPTLLENLVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKET 879
+ + F E+ SV +SS E L+ N +KKKK+K+++
Sbjct: 471 SRDFSGA--GGIGVFSESSSVASKLSSKSEKELK----NRRKKKKQKEQS 514
>gi|93141212 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 31.2 bits (69), Expect = 4.9
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 774 ISSFYLVNDIYELDTSGLED----TMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDG 829
+ SFYL+N I + E+ T+E E+ E F+ +L+QLK + +
Sbjct: 411 LGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAE 470
Query: 830 NLKTHPTLLENLVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKET 879
+ + F E+ SV +SS E L+ N +KKKK+K+++
Sbjct: 471 SRDFSGA--GGIGVFSESSSVASKLSSKSEKELK----NRRKKKKQKEQS 514
>gi|93141210 sodium channel, voltage-gated, type II, alpha isoform 1
[Homo sapiens]
Length = 2005
Score = 31.2 bits (69), Expect = 4.9
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 774 ISSFYLVNDIYELDTSGLED----TMEIQERIENSFKSLLDQLKDVFSKCKGDLLEVKDG 829
+ SFYL+N I + E+ T+E E+ E F+ +L+QLK + +
Sbjct: 411 LGSFYLINLILAVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAE 470
Query: 830 NLKTHPTLLENLVFFVETISVILWVSSYCESVLRPYKLNLQKKKKKKKET 879
+ + F E+ SV +SS E L+ N +KKKK+K+++
Sbjct: 471 SRDFSGA--GGIGVFSESSSVASKLSSKSEKELK----NRRKKKKQKEQS 514
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 31.2 bits (69), Expect = 4.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 279 EAWSPPAEGEHSLEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHLAKLELIRRLRSQG 338
+AW+PPA+GE + + E E+ + IE EES+S ++ E S+
Sbjct: 65 QAWTPPADGEGAGKEEAEVKVEQE-REIESEAGEESESEEESESEEESETE----EESED 119
Query: 339 CNDEYKLGDPEELM 352
+DE D EE M
Sbjct: 120 ESDEESEEDSEEEM 133
>gi|73695475 protein BAP28 [Homo sapiens]
Length = 2144
Score = 31.2 bits (69), Expect = 4.9
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 125 RVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQDENLSKTMFLPLAERMVEKM 184
++ ++K+ + L V P Y + ++Q ++ + + + LP+AE+++EK+
Sbjct: 989 KLKSHQKLSETLKNLLSCVYSCPSYIAKDLMKVLQGVNGE---MVLSQLLPMAEQLLEKI 1045
Query: 185 VKEDKIEAEAEVELYYMILERLGKYQE 211
KE + E + ++ LGKY E
Sbjct: 1046 QKEPTAVLKDEAMVLHL---TLGKYNE 1069
>gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo
sapiens]
Length = 1980
Score = 30.8 bits (68), Expect = 6.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 774 ISSFYLVNDIYELDTSGLED----TMEIQERIENSFKSLLDQLK 813
+ SFYLVN I + E+ T+E E+ E FK++L+QLK
Sbjct: 397 VGSFYLVNLILAVVAMAYEEQNQATLEEAEQKEAEFKAMLEQLK 440
>gi|109659849 filamin A interacting protein 1-like isoform 2 [Homo
sapiens]
Length = 893
Score = 30.4 bits (67), Expect = 8.4
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 6/152 (3%)
Query: 111 NSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSISAQD-ENLS 169
N++E H+ L +A ARV E +Q L K + F IM ++ +D +N
Sbjct: 26 NAKETHTKLALAEARVQE---EEQKATRLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQ 82
Query: 170 KTMFLPLAERMVEKMVKEDKIEAEAEVELYYMILERLGKYQEALDVIRGKLGEKLTSEIQ 229
L R ++++ + ++ +AE EL I E++ K + I ++ E+L +
Sbjct: 83 LQQKLAALSRQIDELEETNRSLRKAEEEL-QDIKEKISKGEYGNAGIMAEV-EELRKRVL 140
Query: 230 SRENKCMAMYKKLSRWPECNALSRRLLLKNSD 261
E K + K + + N R L++ D
Sbjct: 141 DMEGKDEELIKMEEQCRDLNKRLERETLQSKD 172
>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
sapiens]
Length = 1185
Score = 30.4 bits (67), Expect = 8.4
Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 38/318 (11%)
Query: 42 KDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKL 101
K + +++ +++ +E +L+ V LE D + + L + E+ TKL
Sbjct: 251 KVIELQEIISKQSREQSQMKERLASLSSHVTELEEDLDTARKDL------IKSEEMNTKL 304
Query: 102 YEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSI 161
+ + E+ + R Y Q+ +++ + K + S+ Q+
Sbjct: 305 QRDVREAMAQKEDMEERITTLEKR---YLAAQREATSVHDLNDKLENEIANKDSMHRQT- 360
Query: 162 SAQDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELYYMIL------ERLGKYQEALDV 215
+D+N L LAE+ +++ +++ + E E EL + ER G +E L
Sbjct: 361 --EDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKAEERHGNIEERLRQ 418
Query: 216 IRGKLGEKLTSEIQ---SRENKCMAMYKKLSRWPECNALSRRLLLKNSDDWQFYLTY--- 269
+ +L EK E+Q RE K+LS + +LL ++++ Q +L
Sbjct: 419 MEAQLEEK-NQELQRARQREKMNEEHNKRLSDTVD------KLLSESNERLQLHLKERMA 471
Query: 270 ----FDSVFRLIEEAWSPPAEGEHSLEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHL 325
+S+ R +E A E +H + V +A++ D + S H R PHL
Sbjct: 472 ALEDKNSLLREVESAKKQLEETQHDKDQLV--LNIEALRAELDHMRLRGASLHHGR-PHL 528
Query: 326 AKLELIRRLRSQGCNDEY 343
+ R + G D Y
Sbjct: 529 GSVPDFRFPMADGHTDSY 546
>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
sapiens]
Length = 1202
Score = 30.4 bits (67), Expect = 8.4
Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 38/318 (11%)
Query: 42 KDLHCAKVLKAIGLQRTGKQEEAFTLAQEVAALEPTDDNSLQALTILYREMHRPELVTKL 101
K + +++ +++ +E +L+ V LE D + + L + E+ TKL
Sbjct: 251 KVIELQEIISKQSREQSQMKERLASLSSHVTELEEDLDTARKDL------IKSEEMNTKL 304
Query: 102 YEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYKIVPKNPYYFWSVMSLIMQSI 161
+ + E+ + R Y Q+ +++ + K + S+ Q+
Sbjct: 305 QRDVREAMAQKEDMEERITTLEKR---YLAAQREATSVHDLNDKLENEIANKDSMHRQT- 360
Query: 162 SAQDENLSKTMFLPLAERMVEKMVKEDKIEAEAEVELYYMIL------ERLGKYQEALDV 215
+D+N L LAE+ +++ +++ + E E EL + ER G +E L
Sbjct: 361 --EDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKAEERHGNIEERLRQ 418
Query: 216 IRGKLGEKLTSEIQ---SRENKCMAMYKKLSRWPECNALSRRLLLKNSDDWQFYLTY--- 269
+ +L EK E+Q RE K+LS + +LL ++++ Q +L
Sbjct: 419 MEAQLEEK-NQELQRARQREKMNEEHNKRLSDTVD------KLLSESNERLQLHLKERMA 471
Query: 270 ----FDSVFRLIEEAWSPPAEGEHSLEGEVHYSAEKAVKFIEDRITEESKSSRHLRGPHL 325
+S+ R +E A E +H + V +A++ D + S H R PHL
Sbjct: 472 ALEDKNSLLREVESAKKQLEETQHDKDQLV--LNIEALRAELDHMRLRGASLHHGR-PHL 528
Query: 326 AKLELIRRLRSQGCNDEY 343
+ R + G D Y
Sbjct: 529 GSVPDFRFPMADGHTDSY 546
>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
sapiens]
Length = 833
Score = 30.4 bits (67), Expect = 8.4
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
Query: 24 NGNNKMAIQQADKLLKKHKDLHCAKVLKAIGL--QRTGKQEEAFTLAQEVAALEPTDDNS 81
NG+ + A + + L+ D C + L IGL ++ + +EA ++ A+
Sbjct: 506 NGDYEKAAEFYKEALRN--DSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEV 563
Query: 82 LQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYK 141
L + +Y M P + V +P + S L Y R G+ + Q Y+
Sbjct: 564 LYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYR 623
Query: 142 IVPKN 146
P N
Sbjct: 624 YFPCN 628
>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
sapiens]
Length = 824
Score = 30.4 bits (67), Expect = 8.4
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 4/125 (3%)
Query: 24 NGNNKMAIQQADKLLKKHKDLHCAKVLKAIGL--QRTGKQEEAFTLAQEVAALEPTDDNS 81
NG+ + A + + L+ D C + L IGL ++ + +EA ++ A+
Sbjct: 497 NGDYEKAAEFYKEALRN--DSSCTEALYNIGLTYEKLNRLDEALDCFLKLHAILRNSAEV 554
Query: 82 LQALTILYREMHRPELVTKLYEAAVKKVPNSEEYHSHLFMAYARVGEYKKMQQAGMALYK 141
L + +Y M P + V +P + S L Y R G+ + Q Y+
Sbjct: 555 LYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYR 614
Query: 142 IVPKN 146
P N
Sbjct: 615 YFPCN 619
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,445,432
Number of Sequences: 37866
Number of extensions: 1481188
Number of successful extensions: 4584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4549
Number of HSP's gapped (non-prelim): 60
length of query: 972
length of database: 18,247,518
effective HSP length: 112
effective length of query: 860
effective length of database: 14,006,526
effective search space: 12045612360
effective search space used: 12045612360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.