NUP43 27118

Name: NUP43	Sequence: fasta or formatted (380aa)		NCBI GI: 38605733
Description: nucleoporin 43kDa		Referenced in: Nucleus and Nucleolus
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 19 2 C cysteine 2.1 8 1 D aspartate 6.6 25 1 E glutamate 5.3 20 2 F phenylalanine 3.9 15 2 G glycine 6.8 26 2 H histidine 5.5 21 2 I isoleucine 5.0 19 1 K lysine 2.1 8 1 L leucine 8.4 32 2 M methionine 1.3 5 1 N asparagine 4.5 17 2 P proline 5.0 19 2 Q glutamine 5.0 19 2 R arginine 4.2 16 1 S serine 10.8 41 2 T threonine 7.4 28 2 V valine 7.1 27 2 W tryptophan 2.6 10 1 Y tyrosine 1.3 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 43kDa RBBP4 0.042 retinoblastoma binding protein 4 isoform c RBBP4 0.042 retinoblastoma binding protein 4 isoform b RBBP4 0.042 retinoblastoma binding protein 4 isoform a RBBP7 0.042 retinoblastoma binding protein 7 WDR24 0.039 WD repeat domain 24 MLST8 0.038 G protein beta subunit-like WDR17 0.034 WD repeat domain 17 isoform 2 WDR17 0.034 WD repeat domain 17 isoform 1 GRWD1 0.034 glutamate-rich WD repeat containing 1 GNB5 0.033 guanine nucleotide-binding protein, beta-5 subunit is... GNB5 0.033 guanine nucleotide-binding protein, beta-5 subunit i... KATNB1 0.033 katanin p80 subunit B 1 TSSC1 0.030 tumor suppressing subtransferable candidate 1 WDR59 0.030 WD repeat domain 59 APAF1 0.029 apoptotic peptidase activating factor 1 isoform d [H... APAF1 0.029 apoptotic peptidase activating factor 1 isoform c [H... APAF1 0.029 apoptotic peptidase activating factor 1 isoform b [Ho... APAF1 0.029 apoptotic peptidase activating factor 1 isoform a [Ho... WDR89 0.029 WD repeat domain 89 WDR89 0.029 WD repeat domain 89 COPB2 0.027 coatomer protein complex, subunit beta 2 (beta prime)... TAF5 0.025 TBP-associated factor 5 PRPF4 0.025 PRP4 pre-mRNA processing factor 4 homolog SNRNP40 0.025 WD repeat domain 57 (U5 snRNP specific) STRN4 0.025 zinedin isoform 2 STRN4 0.025 zinedin isoform 1 PHIP 0.025 pleckstrin homology domain interacting protein [Homo... TAF5L 0.023 PCAF associated factor 65 beta isoform a TLE3 0.023 transducin-like enhancer protein 3 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.