Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 33356130
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33356130 NMDA receptor regulated 1-like protein isoform 2
[Homo sapiens]
(311 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33356130 NMDA receptor regulated 1-like protein isoform 2 [Ho... 633 0.0
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 613 e-176
gi|160707985 NMDA receptor regulated 1-like protein isoform 3 [H... 613 e-176
gi|17149828 NMDA receptor regulated 1 [Homo sapiens] 491 e-139
gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens] 47 2e-05
gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens] 43 3e-04
gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo ... 40 0.002
gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo ... 40 0.002
gi|83415184 transmembrane and tetratricopeptide repeat containin... 37 0.017
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 37 0.029
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 37 0.029
gi|118402596 cell division cycle protein 23 [Homo sapiens] 36 0.050
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 35 0.065
gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi... 34 0.15
gi|38044112 restin isoform b [Homo sapiens] 34 0.15
gi|4506751 restin isoform a [Homo sapiens] 34 0.15
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 34 0.15
gi|27262638 sperm associated antigen 1 [Homo sapiens] 34 0.19
gi|27262636 sperm associated antigen 1 [Homo sapiens] 34 0.19
gi|24308229 protein kinase C and casein kinase substrate in neur... 33 0.25
gi|215982791 myosin VA isoform 1 [Homo sapiens] 33 0.32
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 33 0.32
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 33 0.32
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 33 0.32
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 33 0.32
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 33 0.32
gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens] 33 0.32
gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Hom... 33 0.42
gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Hom... 33 0.42
gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Hom... 33 0.42
>gi|33356130 NMDA receptor regulated 1-like protein isoform 2 [Homo
sapiens]
Length = 311
Score = 633 bits (1633), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG
Sbjct: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
Query: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL
Sbjct: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
Query: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV
Sbjct: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
Query: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL
Sbjct: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
Query: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL
Sbjct: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
Query: 301 VPGFYNPGTCY 311
VPGFYNPGTCY
Sbjct: 301 VPGFYNPGTCY 311
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 613 bits (1580), Expect = e-176
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG
Sbjct: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
Query: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL
Sbjct: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
Query: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV
Sbjct: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
Query: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL
Sbjct: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
Query: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL
Sbjct: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
Query: 301 VPG 303
VPG
Sbjct: 301 VPG 303
>gi|160707985 NMDA receptor regulated 1-like protein isoform 3 [Homo
sapiens]
Length = 429
Score = 613 bits (1580), Expect = e-176
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG
Sbjct: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
Query: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL
Sbjct: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
Query: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV
Sbjct: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
Query: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL
Sbjct: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
Query: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL
Sbjct: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
Query: 301 VPG 303
VPG
Sbjct: 301 VPG 303
>gi|17149828 NMDA receptor regulated 1 [Homo sapiens]
Length = 866
Score = 491 bits (1264), Expect = e-139
Identities = 235/303 (77%), Positives = 270/303 (89%)
Query: 1 MPNVLLPPKESNLFKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLG 60
MP V LPPKE+ LFKRIL+CYE KQY+NGLKFCK ILSNPKFAEHGETLAMKGLTLNCLG
Sbjct: 1 MPAVSLPPKENALFKRILRCYEHKQYRNGLKFCKQILSNPKFAEHGETLAMKGLTLNCLG 60
Query: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
KKEEAYE VR+GLRND+KSHVCWHVYGLLQRSDKKYDEAIKCYRNALK DKDNLQILRDL
Sbjct: 61 KKEEAYELVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWDKDNLQILRDL 120
Query: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV 180
SLLQIQMRDLEGYRETRYQLLQLRP QRASWIGYAIAYHLL+DY+MA K+LEEFR+TQQ
Sbjct: 121 SLLQIQMRDLEGYRETRYQLLQLRPAQRASWIGYAIAYHLLEDYEMAAKILEEFRKTQQT 180
Query: 181 PPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRL 240
P+K+DYEYSEL+LYQNQV+REA L +E+LEH+ YEKQICDKL VEE KGE+LL+L RL
Sbjct: 181 SPDKVDYEYSELLLYQNQVLREAGLYREALEHLCTYEKQICDKLAVEETKGELLLQLCRL 240
Query: 241 KEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRRLPLTL 300
++A++V++ L +RN ENW YY+GLEKAL+ + + ERL+IYEE ++P+ + PRRLPL
Sbjct: 241 EDAADVYRGLQERNPENWAYYKGLEKALKPANMLERLKIYEEAWTKYPRGLVPRRLPLNF 300
Query: 301 VPG 303
+ G
Sbjct: 301 LSG 303
>gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens]
Length = 1564
Score = 47.0 bits (110), Expect = 2e-05
Identities = 44/200 (22%), Positives = 88/200 (44%), Gaps = 15/200 (7%)
Query: 19 KCYEQ--KQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKK-EEAYEFVRKGLRN 75
+CY + K +C + ++ + A+H LA G +N L + E++ ++K +R
Sbjct: 764 RCYGRALKLMSTSNTWCDLGINYYRQAQH---LAETGSNMNDLKELLEKSLHCLKKAVRL 820
Query: 76 DVKSHVCWHVYGLLQ--RSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
D +H+ W+ G++ Y A C+ +++ ++ N +L +L + ++E
Sbjct: 821 DSNNHLYWNALGVVACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQA 880
Query: 134 RETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQV---PPNKIDYEYS 190
E L P+ WIG A+ + YD ++ FR T ++ + Y Y
Sbjct: 881 HEAFKMAQSLDPSYLMCWIGQALIAEAVGSYD----TMDLFRHTTELNMHTEGALGYAYW 936
Query: 191 ELILYQNQVMREADLLQESL 210
Q++ RE +L Q ++
Sbjct: 937 VCTTLQDKSNRETELYQYNI 956
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 52 KGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDK 111
+GL G+ +A ++ LR D K CW G S Y A+K + A +L+
Sbjct: 570 RGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNP 629
Query: 112 DNLQILRDLSLLQIQMRDLEGYRE--TRYQLL 141
+++ + ++ +Q + L Y+E +YQ++
Sbjct: 630 ESIYSVFKVAAIQ---QILGKYKEAVAQYQMI 658
Score = 30.4 bits (67), Expect = 2.1
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 93 DKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWI 152
+K+Y EA+K + LK +K+N + + ++ + + + +L P Q +W
Sbjct: 19 NKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQ 78
Query: 153 GYAIAY 158
G A Y
Sbjct: 79 GLANLY 84
>gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens]
Length = 843
Score = 43.1 bits (100), Expect = 3e-04
Identities = 42/217 (19%), Positives = 93/217 (42%), Gaps = 27/217 (12%)
Query: 88 LLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQ 147
LL +K++ E ++C+ ++K++ L + L + + D +G + + + L P
Sbjct: 535 LLHLRNKEFQECVECFERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDN 594
Query: 148 RASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREADLLQ 207
+W + +Y LK A + L+E K +YE+ + +++N ++ D+ +
Sbjct: 595 AEAWNNLSTSYIRLKQKVKAFRTLQE--------ALKCNYEHWQ--IWENYILTSTDVGE 644
Query: 208 ES---------LEHIEMYEKQICDKLLVEEI-------KGEILLKL-GRLKEASEVFKNL 250
S L+ + Y+ K+LV + G++ L G+L+E +
Sbjct: 645 FSEAIKAYHRLLDLRDKYKDVQVLKILVRAVIDGMTDRSGDVATGLKGKLQELFGRVTSR 704
Query: 251 IDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQH 287
+ + E W Y + Q +E + ++ +SK +
Sbjct: 705 VTNDGEIWRLYAHVYGNGQSEKPDENEKAFQCLSKAY 741
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 102 CYRNALKLDK-DNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHL 160
CY A +L + + + R +LL ++ ++ + E + +++ P Q W AY
Sbjct: 514 CYDKAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPMQLGVWFSLGCAYLA 573
Query: 161 LKDYDMALKLLEEFRQTQQVPPNKID--YEYSELILYQNQVMREADLLQESL----EHIE 214
L+DY + K F++ + P+ + S + Q ++ LQE+L EH +
Sbjct: 574 LEDYQGSAK---AFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQ 630
Query: 215 MYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNL 250
++E I V E E + RL + + +K++
Sbjct: 631 IWENYILTSTDVGEF-SEAIKAYHRLLDLRDKYKDV 665
Score = 29.3 bits (64), Expect = 4.7
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 24 KQYKNGLK-FCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVC 82
+ Y+ K F + + P AE L+ + L +K +A+ +++ L+ + +
Sbjct: 575 EDYQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLK---QKVKAFRTLQEALKCNYEHWQI 631
Query: 83 WHVYGLLQRSDKKYDEAIKCYRNALKL-DKDNLQILRDLSLLQIQMR 128
W Y L ++ EAIK Y L L DK +D+ +L+I +R
Sbjct: 632 WENYILTSTDVGEFSEAIKAYHRLLDLRDK-----YKDVQVLKILVR 673
>gi|28558993 intraflagellar transport 88 homolog isoform 1 [Homo
sapiens]
Length = 833
Score = 40.4 bits (93), Expect = 0.002
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 37/288 (12%)
Query: 21 YEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSH 80
Y K + + + +++ ++ + L KG T+ G E+A EF ++ LRND
Sbjct: 470 YMGKDFAQASSYADIAVNSDRY--NPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCT 527
Query: 81 VCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQL 140
+ GL + DEA+ C+ LKL ILR+ + + Q+ ++ Y+L
Sbjct: 528 EALYNIGLTYEKLNRLDEALDCF---LKLH----AILRNSAEVLYQIANI-------YEL 573
Query: 141 LQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYS---------E 191
++ P+Q W+ ++ ++ L L E + Y Y E
Sbjct: 574 ME-NPSQAIEWLMQVVS--VIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIE 630
Query: 192 LILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLI 251
+I + + ++++++ E ++ + + + G ++A + +K+
Sbjct: 631 VIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTH 690
Query: 252 DRNAEN---------WCYYEGLEKALQISTLEERLQIYEEISKQHPKA 290
+ EN C GL+ A + + +RL+ +EI +Q K+
Sbjct: 691 RKFPENVECLRFLVRLCTDLGLKDAQEYARKLKRLEKMKEIREQRIKS 738
>gi|28329439 intraflagellar transport 88 homolog isoform 2 [Homo
sapiens]
Length = 824
Score = 40.4 bits (93), Expect = 0.002
Identities = 56/288 (19%), Positives = 117/288 (40%), Gaps = 37/288 (12%)
Query: 21 YEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSH 80
Y K + + + +++ ++ + L KG T+ G E+A EF ++ LRND
Sbjct: 461 YMGKDFAQASSYADIAVNSDRY--NPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCT 518
Query: 81 VCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQL 140
+ GL + DEA+ C+ LKL ILR+ + + Q+ ++ Y+L
Sbjct: 519 EALYNIGLTYEKLNRLDEALDCF---LKLH----AILRNSAEVLYQIANI-------YEL 564
Query: 141 LQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYS---------E 191
++ P+Q W+ ++ ++ L L E + Y Y E
Sbjct: 565 ME-NPSQAIEWLMQVVS--VIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIE 621
Query: 192 LILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLI 251
+I + + ++++++ E ++ + + + G ++A + +K+
Sbjct: 622 VIEWLGAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTH 681
Query: 252 DRNAEN---------WCYYEGLEKALQISTLEERLQIYEEISKQHPKA 290
+ EN C GL+ A + + +RL+ +EI +Q K+
Sbjct: 682 RKFPENVECLRFLVRLCTDLGLKDAQEYARKLKRLEKMKEIREQRIKS 729
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 37.4 bits (85), Expect = 0.017
Identities = 51/239 (21%), Positives = 100/239 (41%), Gaps = 10/239 (4%)
Query: 45 HGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYR 104
H + G LG+ A E+ ++ L+ K+ + + G L + +Y+EA++ Y+
Sbjct: 541 HHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPL-GALYYNTGRYEEALQIYQ 599
Query: 105 NALKLDKDNLQILRDLS-LLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKD 163
A L ++ L+ +L + + E + T + + + + AI Y ++
Sbjct: 600 EAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAI-YSKQEN 658
Query: 164 YDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDK 223
+D AL +++ Q + P I SEL + +RE +LL ++ E + + D+
Sbjct: 659 HDKALDAIDKALQLKPKDPKVI----SELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQ 714
Query: 224 LLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEE 282
G I G+ A ++ + ++ E L K + LE+RLQ E
Sbjct: 715 AQAWMNMGGIQHIKGKYVSARAYYERALQLVPDSKLLKENLAK---LDRLEKRLQEVRE 770
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 36.6 bits (83), Expect = 0.029
Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 57 NCLGKKEE---AYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDN 113
NC + E A +F ++ ++ D + + G ++ D+A+ C+RNA++++ +
Sbjct: 581 NCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH 640
Query: 114 LQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEE 173
L ++ + + L + P + H LK + AL L +
Sbjct: 641 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNK 700
Query: 174 FRQTQQVPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEI 233
P N + + +L+ N+ + A L+ +E ++ + + LV + G++
Sbjct: 701 AIVID--PKNPLCKFHRASVLFANEKYKSA------LQELEELKQIVPKESLVYFLIGKV 752
Query: 234 LLKLGR 239
KLG+
Sbjct: 753 YKKLGQ 758
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 36.6 bits (83), Expect = 0.029
Identities = 35/186 (18%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 57 NCLGKKEE---AYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDN 113
NC + E A +F ++ ++ D + + G ++ D+A+ C+RNA++++ +
Sbjct: 575 NCFSLQREHDIAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRH 634
Query: 114 LQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEE 173
L ++ + + L + P + H LK + AL L +
Sbjct: 635 YNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNK 694
Query: 174 FRQTQQVPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEI 233
P N + + +L+ N+ + A L+ +E ++ + + LV + G++
Sbjct: 695 AIVID--PKNPLCKFHRASVLFANEKYKSA------LQELEELKQIVPKESLVYFLIGKV 746
Query: 234 LLKLGR 239
KLG+
Sbjct: 747 YKKLGQ 752
>gi|118402596 cell division cycle protein 23 [Homo sapiens]
Length = 597
Score = 35.8 bits (81), Expect = 0.050
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 38/189 (20%)
Query: 59 LGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK---------L 109
L KK +A E GL ++YG++ R EAI + A L
Sbjct: 158 LSKKHQARELDGFGL----------YLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWL 207
Query: 110 DKDNL----QILRDLSLLQIQMRDLE-GYRETRYQLLQ--LRPTQRASWIGY-------- 154
+ NL ++L+ LSL M++ + T QL++ L+ Q +G+
Sbjct: 208 ELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVS 267
Query: 155 --AIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREADLLQESLEH 212
A+AYH ++D D AL + E R+ +D +S L LY + E L +L
Sbjct: 268 QIAVAYHNIRDIDKALSIFNELRKQDPYRIENMD-TFSNL-LYVRSMKSELSYLAHNLCE 325
Query: 213 IEMYEKQIC 221
I+ Y + C
Sbjct: 326 IDKYRVETC 334
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 35.4 bits (80), Expect = 0.065
Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 24/222 (10%)
Query: 74 RNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
+ ++++ +CW LL+ ++K Y++ I+ NA L+ LQ+ + + Q +D+E
Sbjct: 718 KGEIEAELCWAKKRLLEEANK-YEKTIEELSNARNLNTSALQLEHEHLIKLNQKKDME-I 775
Query: 134 RETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELI 193
E + + Q+ + + D+ LEE +Q Q+ NK + +L
Sbjct: 776 AELKKNIEQMDTDHK-------------ETKDVLSSSLEEQKQLTQL-INKKEIFIEKLK 821
Query: 194 LYQNQVMREADLLQESLEHIEMYEKQICDK----LLVEEIKGEILLKLGRLKEASEVFKN 249
+++ E D ++L E+ + I +K ++E + +L RL+E
Sbjct: 822 ERSSKLQEELDKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAP 881
Query: 250 LIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAI 291
+ D + E + Q++T++E L EE K H K I
Sbjct: 882 VADPKTLD-SVTELASEVSQLNTIKEHL---EEEIKHHQKII 919
>gi|5803181 stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
protein) [Homo sapiens]
Length = 543
Score = 34.3 bits (77), Expect = 0.15
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 31/234 (13%)
Query: 61 KKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDL 120
KKE E + + L + K + G K +D A+K Y A +LD N+ + +
Sbjct: 206 KKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQ 265
Query: 121 SLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLL-------KDYDMALKLLEE 173
+ + + D RE + +++ R + A AY + + Y A+ +
Sbjct: 266 AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 325
Query: 174 FRQTQQVPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEI 233
+ P + +E IL + QE L +I D L E+ KG
Sbjct: 326 SLAEHRTPDVLKKCQQAEKILKE----------QERLAYINP------DLALEEKNKGNE 369
Query: 234 LLKLGRLKEASEVFKNLIDRNAEN--------WCYYEGLEKALQISTLEERLQI 279
+ G +A + + I RN ++ CY + LE L + EE +Q+
Sbjct: 370 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 423
Score = 33.5 bits (75), Expect = 0.25
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 97 DEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAI 156
D+A++CY A+KLD N + + S + D + E + + L+P + A
Sbjct: 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80
Query: 157 AYHLLKDYDMALKLLEE 173
A L ++ A + EE
Sbjct: 81 ALEFLNRFEEAKRTYEE 97
Score = 32.0 bits (71), Expect = 0.72
Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 16/156 (10%)
Query: 21 YEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLT-LNCLGKKEEAYEFVRKGLRNDVKS 79
+++++YK+ + F N AEH +K + K++E ++ L + K+
Sbjct: 311 FKEEKYKDAIHFY-----NKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKN 365
Query: 80 --HVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETR 137
+ C+ Q+ D Y +A+K Y A+K + + ++ + + ++ + + +
Sbjct: 366 KGNECF------QKGD--YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 417
Query: 138 YQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEE 173
+ +QL PT + A A +KDY A+ + ++
Sbjct: 418 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK 453
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 34.3 bits (77), Expect = 0.15
Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 36/286 (12%)
Query: 22 EQKQYKNGLKFCKMILSNPKFAEHGETLAMKGL----TLNCLGKKEEAYEFVRKGLRNDV 77
E Q K L+ IL KFAE E T+N L +KEE + + L +
Sbjct: 795 EVSQVKETLEKELQILKE-KFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEK-L 852
Query: 78 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILR---DLSLLQIQMRDLEGYR 134
+ ++ + + D++ ++ IK KL+ D +I++ D S +M D +
Sbjct: 853 RENLA-DMEAKFREKDEREEQLIKAKE---KLENDIAEIMKMSGDNSSQLTKMNDELRLK 908
Query: 135 ETRYQLLQLRPT---QRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSE 191
E + LQL+ T + AS++ +I DM +K Q+QQ K + E E
Sbjct: 909 ERDVEELQLKLTKANENASFLQKSIE-------DMTVKA----EQSQQEAAKKHEEEKKE 957
Query: 192 LILYQNQVMREADLLQESLEHIEM-YEKQICD-----KLLVEEIKGEILLKLGRLKEASE 245
L + + ++ + + ++ YE+ + + +++ ++ +L +LK A E
Sbjct: 958 LERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGARE 1017
Query: 246 VFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAI 291
L+ E + +KA T E+ +QI E+++K+ + +
Sbjct: 1018 ENSGLLQELEE---LRKQADKAKAAQTAEDAMQIMEQMTKEKTETL 1060
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 34.3 bits (77), Expect = 0.15
Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 36/286 (12%)
Query: 22 EQKQYKNGLKFCKMILSNPKFAEHGETLAMKGL----TLNCLGKKEEAYEFVRKGLRNDV 77
E Q K L+ IL KFAE E T+N L +KEE + + L +
Sbjct: 830 EVSQVKETLEKELQILKE-KFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEK-L 887
Query: 78 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILR---DLSLLQIQMRDLEGYR 134
+ ++ + + D++ ++ IK KL+ D +I++ D S +M D +
Sbjct: 888 RENLA-DMEAKFREKDEREEQLIKAKE---KLENDIAEIMKMSGDNSSQLTKMNDELRLK 943
Query: 135 ETRYQLLQLRPT---QRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSE 191
E + LQL+ T + AS++ +I DM +K Q+QQ K + E E
Sbjct: 944 ERDVEELQLKLTKANENASFLQKSIE-------DMTVKA----EQSQQEAAKKHEEEKKE 992
Query: 192 LILYQNQVMREADLLQESLEHIEM-YEKQICD-----KLLVEEIKGEILLKLGRLKEASE 245
L + + ++ + + ++ YE+ + + +++ ++ +L +LK A E
Sbjct: 993 LERKLSDLEKKMETSHNQCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGARE 1052
Query: 246 VFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAI 291
L+ E + +KA T E+ +QI E+++K+ + +
Sbjct: 1053 ENSGLLQELEE---LRKQADKAKAAQTAEDAMQIMEQMTKEKTETL 1095
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 34.3 bits (77), Expect = 0.15
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 108 KLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQ 142
KL K NL+ L+ L L ++ +LE YRE+ ++LLQ
Sbjct: 65 KLRKQNLKNLKSLDLFNCEITNLEDYRESIFELLQ 99
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.9 bits (76), Expect = 0.19
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 92 SDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASW 151
+DK Y +A+ Y LK++ I + +L +++ E ++ Q LQL ++
Sbjct: 635 NDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAF 694
Query: 152 IGYAIAYHLLKDYDMAL 168
A+A+ LK+Y +L
Sbjct: 695 YRRALAHKGLKNYQKSL 711
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 33.9 bits (76), Expect = 0.19
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 92 SDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASW 151
+DK Y +A+ Y LK++ I + +L +++ E ++ Q LQL ++
Sbjct: 635 NDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQALQLADGNVKAF 694
Query: 152 IGYAIAYHLLKDYDMAL 168
A+A+ LK+Y +L
Sbjct: 695 YRRALAHKGLKNYQKSL 711
>gi|24308229 protein kinase C and casein kinase substrate in neurons
1 [Homo sapiens]
Length = 444
Score = 33.5 bits (75), Expect = 0.25
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 188 EYSELILYQNQVMREAD------------LLQESLEHIEMYEKQICDKLLVEEIKGEILL 235
+Y L +M EAD LL E LE ++ ++K K ++ K
Sbjct: 76 QYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFK----- 130
Query: 236 KLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAITPRR 295
KEA + F+ A+ E +KA ++ EE+L + E++ + +++TP +
Sbjct: 131 ---ETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQ 187
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 33.1 bits (74), Expect = 0.32
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 14/116 (12%)
Query: 184 KIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEI-----KGEILLKLG 238
++D E+++ ++Q++ + + +Q + M + I L+E++ KGEI
Sbjct: 1258 ELDVRKEEVLILRSQLVSQKEAIQPKDDKNTMTDSTI----LLEDVQKMKDKGEIAQAYI 1313
Query: 239 RLKE---ASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEISKQHPKAI 291
LKE +S + + ++ + E W YEGL++A ++ LE +LQ + + +A+
Sbjct: 1314 GLKETNRSSALDYHELNEDGELWLVYEGLKQANRL--LESQLQSQKRSHENEAEAL 1367
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 33.1 bits (74), Expect = 0.32
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 155 AIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQV--------MREADLL 206
A+ L+ L+LL++++ + + I E S + L + + + E +++
Sbjct: 1521 ALVTECLEQCGRVLELLKQYQNFKSILTTLIQKEESVISLQASYMGKENLKKRIAEIEIV 1580
Query: 207 QESL-EHIEMYEK--QICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEG 263
+E EH+E+ +K Q+C L K + + KEA+ + +D N + YYE
Sbjct: 1581 KEEFNEHLEVVDKINQVCKNLQFYLNKMKTFEEPPFEKEANIIVDRWLDINEKTEDYYEN 1640
Query: 264 LEKALQI 270
L +AL +
Sbjct: 1641 LGRALAL 1647
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 33.1 bits (74), Expect = 0.32
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 155 AIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQV--------MREADLL 206
A+ L+ L+LL++++ + + I E S + L + + + E +++
Sbjct: 1521 ALVTECLEQCGRVLELLKQYQNFKSILTTLIQKEESVISLQASYMGKENLKKRIAEIEIV 1580
Query: 207 QESL-EHIEMYEK--QICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEG 263
+E EH+E+ +K Q+C L K + + KEA+ + +D N + YYE
Sbjct: 1581 KEEFNEHLEVVDKINQVCKNLQFYLNKMKTFEEPPFEKEANIIVDRWLDINEKTEDYYEN 1640
Query: 264 LEKALQI 270
L +AL +
Sbjct: 1641 LGRALAL 1647
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 33.1 bits (74), Expect = 0.32
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 89 LQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQ-----L 143
L +++ EA++ YRN + KD L D Q +++ E R LLQ L
Sbjct: 1633 LNHANRMAAEALRNYRNTQAILKDTQLHLDDALRSQEDLKEQLAMVERRANLLQAEIEEL 1692
Query: 144 RPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREA 203
R T + IA L D ++LL + K++ + S++ Q ++
Sbjct: 1693 RATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETDISQI---QGEM---E 1746
Query: 204 DLLQESLEHIEMYEKQICD-KLLVEEIKGE 232
D++QE+ E +K I D ++ EE+K E
Sbjct: 1747 DIIQEARNAEEKAKKAITDAAMMAEELKKE 1776
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 33.1 bits (74), Expect = 0.32
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 89 LQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQ-----L 143
L +++ EA++ YRN + KD L D Q +++ E R LLQ L
Sbjct: 1635 LNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEEL 1694
Query: 144 RPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREA 203
R T + IA L D ++LL + K++ + S++ Q ++
Sbjct: 1695 RATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETDISQM---QGEM---E 1748
Query: 204 DLLQESLEHIEMYEKQICD-KLLVEEIKGE 232
D+LQE+ E +K I D ++ EE+K E
Sbjct: 1749 DILQEARNAEEKAKKAITDAAMMAEELKKE 1778
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 33.1 bits (74), Expect = 0.32
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 89 LQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQ-----L 143
L +++ EA++ YRN + KD L D Q +++ E R LLQ L
Sbjct: 1635 LNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEEL 1694
Query: 144 RPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMREA 203
R T + IA L D ++LL + K++ + S++ Q ++
Sbjct: 1695 RATLEQTERSRKIAEQELLDASERVQLLHTQNTSLINTKKKLETDISQM---QGEM---E 1748
Query: 204 DLLQESLEHIEMYEKQICD-KLLVEEIKGE 232
D+LQE+ E +K I D ++ EE+K E
Sbjct: 1749 DILQEARNAEEKAKKAITDAAMMAEELKKE 1778
>gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]
Length = 519
Score = 33.1 bits (74), Expect = 0.32
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 3/163 (1%)
Query: 83 WHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQ 142
W+ G+ KKY AI C + A L + +IL +L L+ + M+ +
Sbjct: 273 WNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAIN 332
Query: 143 LRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILYQNQVMRE 202
+P ++ A+A L+D + A + E + P ++ Y+ L+ Q +
Sbjct: 333 FQPKMGELYMLLAVALTNLEDIENAKRAYAEAVHLDKCNP-LVNLNYAVLLYNQGEKKNA 391
Query: 203 ADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASE 245
QE + + + + L + E+ KLG + E
Sbjct: 392 LAQYQEMEKKVSLLKDN--SSLEFDSEMVEMAQKLGAALQVGE 432
>gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Homo
sapiens]
Length = 381
Score = 32.7 bits (73), Expect = 0.42
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 109 LDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMAL 168
+DK+ +Q +R+ S+LQ Q R E T + R Q+ YA++ ++K +
Sbjct: 91 VDKEMMQRIREKSILQAQERAKEA---TEAKAAAKREDQK-----YALSV-MMKIEEEER 141
Query: 169 KLLEEFRQTQQVPPNK---IDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLL 225
K +E+ ++ +++ K EY Q ++ RE L Q+ + I+ K+I K L
Sbjct: 142 KKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEKLCQKE-KQIKEERKKIKYKSL 200
Query: 226 VEEIKGEILLKLGRLKE 242
+ L GR E
Sbjct: 201 TRNLASRNLAPKGRNSE 217
>gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Homo
sapiens]
Length = 376
Score = 32.7 bits (73), Expect = 0.42
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 109 LDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMAL 168
+DK+ +Q +R+ S+LQ Q R E T + R Q+ YA++ ++K +
Sbjct: 91 VDKEMMQRIREKSILQAQERAKEA---TEAKAAAKREDQK-----YALSV-MMKIEEEER 141
Query: 169 KLLEEFRQTQQVPPNK---IDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLL 225
K +E+ ++ +++ K EY Q ++ RE L Q+ + I+ K+I K L
Sbjct: 142 KKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEKLCQKE-KQIKEERKKIKYKSL 200
Query: 226 VEEIKGEILLKLGRLKE 242
+ L GR E
Sbjct: 201 TRNLASRNLAPKGRNSE 217
>gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Homo
sapiens]
Length = 420
Score = 32.7 bits (73), Expect = 0.42
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 109 LDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMAL 168
+DK+ +Q +R+ S+LQ Q R E T + R Q+ YA++ ++K +
Sbjct: 91 VDKEMMQRIREKSILQAQERAKEA---TEAKAAAKREDQK-----YALSV-MMKIEEEER 141
Query: 169 KLLEEFRQTQQVPPNK---IDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLL 225
K +E+ ++ +++ K EY Q ++ RE L Q+ + I+ K+I K L
Sbjct: 142 KKIEDMKENERIKATKALEAWKEYQRKAEEQKKIQREEKLCQKE-KQIKEERKKIKYKSL 200
Query: 226 VEEIKGEILLKLGRLKE 242
+ L GR E
Sbjct: 201 TRNLASRNLAPKGRNSE 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,329,998
Number of Sequences: 37866
Number of extensions: 463778
Number of successful extensions: 1563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 238
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.