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Search of human proteins with 33286414
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo
sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo ... 652 0.0
gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo ... 630 0.0
gi|7657154 hairy/enhancer-of-split related with YRPW motif-like ... 36 0.053
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 35 0.069
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 32 0.59
gi|169166115 PREDICTED: hypothetical protein [Homo sapiens] 32 0.77
gi|169165309 PREDICTED: hypothetical protein [Homo sapiens] 32 0.77
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 32 0.77
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 31 1.3
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 31 1.3
gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Ho... 31 1.3
gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens] 30 2.2
gi|122937243 dual specificity phosphatase 27 [Homo sapiens] 30 2.9
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 30 2.9
gi|164663775 mitochondrial methionyl-tRNA formyltransferase prec... 30 2.9
gi|13236579 solute carrier family 27 member 3 [Homo sapiens] 30 2.9
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo... 30 3.8
gi|161019170 mucin 5AC [Homo sapiens] 29 5.0
gi|169204626 PREDICTED: hypothetical protein [Homo sapiens] 29 5.0
gi|239750266 PREDICTED: hypothetical protein [Homo sapiens] 29 5.0
gi|239744574 PREDICTED: hypothetical protein [Homo sapiens] 29 5.0
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 5.0
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens] 29 5.0
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens] 29 5.0
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 29 6.5
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 29 6.5
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 29 6.5
gi|71773010 adaptor-related protein complex 1, gamma 1 subunit i... 29 6.5
gi|71772942 adaptor-related protein complex 1, gamma 1 subunit i... 29 6.5
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 29 6.5
>gi|33286414 Hermansky-Pudlak syndrome 1 protein isoform c [Homo
sapiens]
Length = 324
Score = 652 bits (1681), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
Sbjct: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
Query: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
Sbjct: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
Query: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
Sbjct: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
Sbjct: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
Query: 301 FTPAPSPGDQSSGEDRRKAGGNNS 324
FTPAPSPGDQSSGEDRRKAGGNNS
Sbjct: 301 FTPAPSPGDQSSGEDRRKAGGNNS 324
>gi|33286416 Hermansky-Pudlak syndrome 1 protein isoform a [Homo
sapiens]
Length = 700
Score = 630 bits (1625), Expect = 0.0
Identities = 315/321 (98%), Positives = 315/321 (98%)
Query: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT
Sbjct: 1 MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMT 60
Query: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF
Sbjct: 61 MLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHF 120
Query: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC
Sbjct: 121 GLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLC 180
Query: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL
Sbjct: 181 ELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILL 240
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY
Sbjct: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEY 300
Query: 301 FTPAPSPGDQSSGEDRRKAGG 321
FTPAPSPGDQSSG GG
Sbjct: 301 FTPAPSPGDQSSGSTIWLEGG 321
>gi|7657154 hairy/enhancer-of-split related with YRPW motif-like
[Homo sapiens]
Length = 328
Score = 35.8 bits (81), Expect = 0.053
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 255 IQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGE 314
+ PS R ARSS P+ Q+ SP GPTG ++ + P+P S G
Sbjct: 260 VAPSSRAARSSHIAPLLQSSSPTPPGPTGSAA--------------YVAVPTPNSSSPGP 305
Query: 315 DRRKAG 320
R AG
Sbjct: 306 AGRPAG 311
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 35.4 bits (80), Expect = 0.069
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 252 EDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQS 311
E+D P+ RSS+N Q +W S+G G S+ + + S + P+ P S
Sbjct: 82 EEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTM 141
Query: 312 SG 313
+G
Sbjct: 142 AG 143
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 0.59
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 230 RPADLLALILLVQDLYPSESTAEDDIQPSPRR------ARSSQNIPVQQAWSPH-STGPT 282
RP AL+ + + +PS ST + P P + S+ + P + P+ S GP+
Sbjct: 327 RPLPQPALLPMSSNTFPSRSTKPSPMNPLPSSHMPGAFSESNSSFPQSASLPPYFSQGPS 386
Query: 283 GGSSAETETDSFSLPEEYFTPAPSPGDQSS 312
E +F LP PSP ++ +
Sbjct: 387 NRPPIRAEGRNFPLPLPNKPRPPSPAEEEN 416
>gi|169166115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 32.0 bits (71), Expect = 0.77
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 237 LILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFS- 295
LILLV L+ + I PSPRR Q P Q+ P GP GG+ + D
Sbjct: 122 LILLV--LFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPA 179
Query: 296 -LPEEYFTPAPSPGDQSSGEDRRKAGGNNS 324
L +E + S G R + GG S
Sbjct: 180 LLRDEAAAGSQDSLLDSGGGGRGRGGGGRS 209
>gi|169165309 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 32.0 bits (71), Expect = 0.77
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 237 LILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFS- 295
LILLV L+ + I PSPRR Q P Q+ P GP GG+ + D
Sbjct: 122 LILLV--LFAIGYFLQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSPA 179
Query: 296 -LPEEYFTPAPSPGDQSSGEDRRKAGGNNS 324
L +E + S G R + GG S
Sbjct: 180 LLRDEAAAGSQDSLLDSGGGGRGRGGGGRS 209
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 32.0 bits (71), Expect = 0.77
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 179 LCELCIEALER------HVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPA 232
LCE C+EA +R H +++ + R GE ++ + H L+ F S + R
Sbjct: 173 LCETCVEAHQRVKYTKDHTVRSTGPAKSRDGERTVYCNVHKHEPLVLFCESCDTLTCRDC 232
Query: 233 DLLA 236
L A
Sbjct: 233 QLNA 236
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 246 PSESTAEDD-IQPSPRRARSSQNIPVQQAWSPH---STGPTGGSSAETETDSFSLPEEYF 301
PS S AE P RR+ + P+++ +GP G + E+ + E F
Sbjct: 588 PSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEESTGPEEAEAPESF 647
Query: 302 TPAPSPGDQSSGEDRRKAGG 321
A SPGD ++G R GG
Sbjct: 648 PAAASPGDSATGHRRPPLGG 667
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 246 PSESTAEDD-IQPSPRRARSSQNIPVQQAWSPH---STGPTGGSSAETETDSFSLPEEYF 301
PS S AE P RR+ + P+++ +GP G + E+ + E F
Sbjct: 502 PSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEESTGPEEAEAPESF 561
Query: 302 TPAPSPGDQSSGEDRRKAGG 321
A SPGD ++G R GG
Sbjct: 562 PAAASPGDSATGHRRPPLGG 581
>gi|45827809 mitogen-activated protein kinase kinase kinase 6 [Homo
sapiens]
Length = 1288
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 257 PSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSG--- 313
PS SQ P QA S H P + T +PEE P+ ++SSG
Sbjct: 934 PSANSTTQSQTFPCPQAPSQHPPSPPKRCLSYGGTSQLRVPEEPAAEEPASPEESSGLSL 993
Query: 314 ---EDRRKA 319
E +R+A
Sbjct: 994 LHQESKRRA 1002
>gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens]
Length = 153
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 241 VQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFS-LP-E 298
+ L PS S A IQPSP + S+ IP + +G SAE S S LP
Sbjct: 8 ITHLSPSSSGATPTIQPSP-SSTDSRMIPSSPQPETITHPSSGSPSAELTPSSHSTLPSS 66
Query: 299 EYFTPAPSPGDQSSGED 315
E TP SP S G +
Sbjct: 67 ESLTPHWSPTSHSPGTE 83
>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
Length = 1158
Score = 30.0 bits (66), Expect = 2.9
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 221 YSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRR----ARSSQNIPVQQAWSP 276
YSS S +S +P L V D Y S S ++ S + R+ + P Q WS
Sbjct: 898 YSSRS-NSQKPETDTCSSLAVCDHYASGSRVGKEMDSSINKWLSGLRTEEKPPFQSDWSG 956
Query: 277 HSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGEDRRKAGGNN 323
S G SS ET+S S ++ + S ++ +A GN+
Sbjct: 957 SSRGKYTRSSLLRETESKSSSYKF---SKSQSEEQDTSSYHEANGNS 1000
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 251 AEDDIQPSPRRARSSQNIPVQQAWSPHSTGPT-------------GGSSAETETDSFSLP 297
AE++ QP P + + + P S G T G S E S +P
Sbjct: 2217 AEEEAQPEPEGVETPE---AEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVP 2273
Query: 298 EEYFTPAPSPG 308
E+ TP PSPG
Sbjct: 2274 EDRPTPPPSPG 2284
>gi|164663775 mitochondrial methionyl-tRNA formyltransferase
precursor [Homo sapiens]
Length = 389
Score = 30.0 bits (66), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 13 VLFYWTDQEFEESLRLKFGQSENEEEEL 40
VLF+ TDQ E+LR EN+EEEL
Sbjct: 50 VLFFGTDQFAREALRALHAARENKEEEL 77
>gi|13236579 solute carrier family 27 member 3 [Homo sapiens]
Length = 730
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 112 LKYLFEVHFGLVTVDGH-----LIRKELRPPDLAQRVQLWEHFQSLLWTYSR---LREQE 163
L +L EV+ VTV GH + LRPP +QL+ H L Y+R LR QE
Sbjct: 614 LDFLQEVNVYGVTVPGHEGRAGMAALVLRPPHALDLMQLYTHVSENLPPYARPRFLRLQE 673
Query: 164 QCFAVEALER 173
E ++
Sbjct: 674 SLATTETFKQ 683
>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
1 [Homo sapiens]
Length = 745
Score = 29.6 bits (65), Expect = 3.8
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 185 EALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDL 244
EA E ++A R E +H L + +L S HS + AD+ I ++D
Sbjct: 90 EATEAQSLEATCEKLNRFNSELVHEILCLEKELKEEKSKHSEQNELMADISKRIQSLEDE 149
Query: 245 YPSESTAEDDIQPSPRRARSSQ---NIPVQQAWSPHS 278
S + + + + +R ++++ I +Q AW +S
Sbjct: 150 SKSLKSQVAEAKMTFKRFQANEERLEIEIQDAWKENS 186
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 247 SESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPS 306
+ +T+ +P + R+S +P +P +T T G + + L Y P PS
Sbjct: 3416 TRATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEW-LDYSYPMPGPS 3474
Query: 307 PGDQSSGEDRRKAGG 321
GD + + R AGG
Sbjct: 3475 GGDFDTYSNIRAAGG 3489
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 247 SESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPS 306
+ T+ +P + R+S +P +P +T T G + + L Y P PS
Sbjct: 4061 TRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEW-LDYSYPMPGPS 4119
Query: 307 PGDQSSGEDRRKAGG 321
GD + + R AGG
Sbjct: 4120 GGDFDTYSNIRAAGG 4134
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPG 308
+T+ +P + R+S +P +P +T T G + + L Y P PS G
Sbjct: 4565 ATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEW-LDYSYPMPGPSGG 4623
Query: 309 DQSSGEDRRKAGG 321
D + + R AGG
Sbjct: 4624 DFDTYSNIRAAGG 4636
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPG 308
+T+ +P + R+S +P +P +T T G + + L Y P PS G
Sbjct: 2916 ATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEW-LDYSYPMPGPSGG 2974
Query: 309 DQSSGEDRRKAGG 321
D + + R AGG
Sbjct: 2975 DFDTYSNIRAAGG 2987
>gi|169204626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 24 ESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTY 69
E L+L SE ++ + A QL T +I+ + E++SDTY
Sbjct: 421 EELKLSMNASEEQKSMIVAQSKQLETENRALILKIRILQEEMSDTY 466
>gi|239750266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 24 ESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTY 69
E L+L SE ++ + A QL T +I+ + E++SDTY
Sbjct: 421 EELKLSMNASEEQKSMIVAQSKQLETENRALILKIRILQEEMSDTY 466
>gi|239744574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 24 ESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTY 69
E L+L SE ++ + A QL T +I+ + E++SDTY
Sbjct: 421 EELKLSMNASEEQKSMIVAQSKQLETENRALILKIRILQEEMSDTY 466
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 247 SESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPS 306
+ +T+ +P + R+S +P +P +T T G + + L Y P PS
Sbjct: 2836 TRATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEW-LDYSYPMPGPS 2894
Query: 307 PGDQSSGEDRRKAGG 321
GD + + R AGG
Sbjct: 2895 GGDFDTYSNIRAAGG 2909
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 247 SESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPS 306
+ T+ +P + R+S +P +P +T T G + + L Y P PS
Sbjct: 3536 TRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEW-LDYSYPMPGPS 3594
Query: 307 PGDQSSGEDRRKAGG 321
GD + + R AGG
Sbjct: 3595 GGDFDTYSNIRAAGG 3609
Score = 29.3 bits (64), Expect = 5.0
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPG 308
+T+ +P + R+S +P +P +T T G + + L Y P PS G
Sbjct: 4095 ATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCAWSEW-LDYSYPMPGPSGG 4153
Query: 309 DQSSGEDRRKAGG 321
D + + R AGG
Sbjct: 4154 DFDTYSNIRAAGG 4166
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPG 308
+T+ +P + R+S +P +P +T T G + + L Y P PS G
Sbjct: 2281 ATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCAWSEW-LDYSYPMPGPSGG 2339
Query: 309 DQSSGEDRRKAGG 321
D + + R AGG
Sbjct: 2340 DFDTYSNIRAAGG 2352
>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
Length = 1226
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 240 LVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEE 299
++ L SES+AED Q R A+ N +++ H T ++ E +S SL EE
Sbjct: 617 ILNGLQASESSAEDSEQEDERGAQDMDNNGKEESKIDHLTNNRNDLISKEEQNSSSLLEE 676
>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
Length = 1312
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 240 LVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEE 299
++ L SES+AED Q R A+ N +++ H T ++ E +S SL EE
Sbjct: 703 ILNGLQASESSAEDSEQEDERGAQDMDNNGKEESKIDHLTNNRNDLISKEEQNSSSLLEE 762
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQ-------------QAWSPHSTGPTGGSSAETETDSFS 295
STAE+ QP+P + P + + + + GP+ G SA + S
Sbjct: 1429 STAEEGPQPAPEQEEKPPETPAEVVESAPGAGEAPAEKLAEETEGPSDGESAAEKRSSEK 1488
Query: 296 LPEEYFTPAPSPGDQSSGEDRRK 318
++ SP +S D+RK
Sbjct: 1489 SDDDKKPKTDSPKSVASKADKRK 1511
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 28.9 bits (63), Expect = 6.5
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 249 STAEDDIQPSPRRARSSQNIPVQ-------------QAWSPHSTGPTGGSSAETETDSFS 295
STAE+ QP+P + P + + + + GP+ G SA + S
Sbjct: 1484 STAEEGPQPAPEQEEKPPETPAEVVESAPGAGEAPAEKLAEETEGPSDGESAAEKRSSEK 1543
Query: 296 LPEEYFTPAPSPGDQSSGEDRRK 318
++ SP +S D+RK
Sbjct: 1544 SDDDKKPKTDSPKSVASKADKRK 1566
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 28.9 bits (63), Expect = 6.5
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 269 PVQQAWSPHSTGPTGGSSAETETDSFSLPEE-----YFTPAPSPGDQSSGEDRRKAGGNN 323
P Q P +T P G ++ + SF LP F PSP D S D +G +
Sbjct: 406 PAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLS 465
Query: 324 S 324
S
Sbjct: 466 S 466
>gi|71773010 adaptor-related protein complex 1, gamma 1 subunit
isoform a [Homo sapiens]
Length = 825
Score = 28.9 bits (63), Expect = 6.5
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 31 GQSENEEEELPALEDQLSTLLAPVIISSM----------TMLEKLSDTYTC 71
GQ E EEE + ED++ +L V+IS+M T + KLS +TC
Sbjct: 493 GQCE-EEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 542
>gi|71772942 adaptor-related protein complex 1, gamma 1 subunit
isoform b [Homo sapiens]
Length = 822
Score = 28.9 bits (63), Expect = 6.5
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 31 GQSENEEEELPALEDQLSTLLAPVIISSM----------TMLEKLSDTYTC 71
GQ E EEE + ED++ +L V+IS+M T + KLS +TC
Sbjct: 490 GQCE-EEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 539
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 28.9 bits (63), Expect = 6.5
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 124 TVDGHLIRKELRP--PDLAQRVQLWEHFQSLLWTYSRLREQEQCFA-------VEALERL 174
+VD + KE + D ++V + +L T+S E++Q F EA E+L
Sbjct: 2656 SVDSQISSKENKDLISDATEKVSIAAEDDTLDNTFSEELEKQQQFTEEEDNLYAEASEKL 2715
Query: 175 IHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADL 234
P L L E + + + E+ ++ L L+ LL + + + L+
Sbjct: 2716 CTPLLDLLTREKNQLEAQLKSSLNEEKKSKQQLEKISLLTDSLLKVFVKDTVNQLQQ--- 2772
Query: 235 LALILLVQD----LYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETE 290
I +D L E +D + +P+ SQN+ Q SP +G S E E
Sbjct: 2773 ---IKKTRDEKIQLSNQELLGDDQKKVTPQDL--SQNVEEQ---SPSISGCFLSSELEDE 2824
Query: 291 TDSFSLPEEYFTPAP-SPGDQSSGED 315
+ S P+ P P SP +SG++
Sbjct: 2825 KEEISSPD--MCPRPESPVFGASGQE 2848
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,371,912
Number of Sequences: 37866
Number of extensions: 622368
Number of successful extensions: 2509
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2480
Number of HSP's gapped (non-prelim): 45
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.