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Search of human proteins with 32967591
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32967591 phosducin isoform a [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32967591 phosducin isoform a [Homo sapiens] 495 e-140
gi|12408668 phosducin isoform b [Homo sapiens] 391 e-109
gi|88758594 phosducin-like [Homo sapiens] 225 3e-59
gi|13129044 phosducin-like 3 [Homo sapiens] 64 1e-10
gi|51944950 phosducin-like 2 [Homo sapiens] 63 2e-10
gi|95113651 glutaredoxin 3 [Homo sapiens] 39 0.003
gi|18104959 thioredoxin domain containing 9 [Homo sapiens] 38 0.007
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 36 0.027
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 35 0.078
gi|38348344 hypothetical protein LOC374355 [Homo sapiens] 32 0.51
gi|145977194 hypothetical protein LOC400793 isoform 2 [Homo sapi... 31 0.86
gi|207028635 hypothetical protein LOC400793 isoform 1 [Homo sapi... 31 0.86
gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo ... 31 0.86
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 31 1.1
gi|150417969 voltage-gated sodium channel type V alpha isoform d... 31 1.1
gi|150417967 voltage-gated sodium channel type V alpha isoform c... 31 1.1
gi|239748090 PREDICTED: similar to sodium channel, voltage-gated... 31 1.1
gi|148746195 trichohyalin [Homo sapiens] 30 1.5
gi|20270307 coiled-coil domain containing 74A [Homo sapiens] 30 1.5
gi|223005859 WD repeat domain 67 isoform 1 [Homo sapiens] 30 1.9
gi|223005857 WD repeat domain 67 isoform 2 [Homo sapiens] 30 1.9
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 30 1.9
gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens] 30 1.9
gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens] 30 1.9
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 29 3.3
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 29 4.3
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 29 4.3
gi|46409266 coiled-coil domain containing 74B [Homo sapiens] 29 4.3
gi|21361403 thioredoxin 2 precursor [Homo sapiens] 28 5.6
gi|5032169 telomeric repeat binding factor 2 [Homo sapiens] 28 7.3
>gi|32967591 phosducin isoform a [Homo sapiens]
Length = 246
Score = 495 bits (1274), Expect = e-140
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRN 60
MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRN
Sbjct: 1 MEEAKSQSLEEDFEGQATHTGPKGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRN 60
Query: 61 GKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETG 120
GKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETG
Sbjct: 61 GKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETG 120
Query: 121 KQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDR 180
KQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDR
Sbjct: 121 KQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDR 180
Query: 181 FSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKI 240
FSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKI
Sbjct: 181 FSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREVHVLEHTKI 240
Query: 241 EEEDVE 246
EEEDVE
Sbjct: 241 EEEDVE 246
>gi|12408668 phosducin isoform b [Homo sapiens]
Length = 194
Score = 391 bits (1004), Expect = e-109
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 53 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG 112
MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG
Sbjct: 1 MSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYG 60
Query: 113 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA 172
FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA
Sbjct: 61 FVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKA 120
Query: 173 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV 232
SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV
Sbjct: 121 SNTGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREV 180
Query: 233 HVLEHTKIEEEDVE 246
HVLEHTKIEEEDVE
Sbjct: 181 HVLEHTKIEEEDVE 194
>gi|88758594 phosducin-like [Homo sapiens]
Length = 301
Score = 225 bits (573), Expect = 3e-59
Identities = 108/232 (46%), Positives = 167/232 (71%), Gaps = 10/232 (4%)
Query: 14 EGQATHTGPKGVINDWRKFK-LESQDSDSIPPSKKEILRQMS---------SPQSRNGKD 63
EG + +TGPKGVINDWR+FK LE++ + + +++++S + + KD
Sbjct: 51 EGISVNTGPKGVINDWRRFKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKD 110
Query: 64 SKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGKQF 123
+E++S KM+++E+ +++++++DE L++YR+Q M++M Q+L GP++ V+E+ +G+ F
Sbjct: 111 LQEKISGKMTLKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGF 170
Query: 124 LETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKASNTGAGDRFSL 183
L+ I+KE K I+VHIYEDGI G +A+N + CLAAEYP VKFCK+K+S GA +F+
Sbjct: 171 LDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIGASSQFTR 230
Query: 184 DVLPTLLIYKGGELISNFISVAEQFAEEFFAGDVESFLNEYGLLPEREVHVL 235
+ LP LLIYKGGELI NF+ V +Q ++FFA D+E+FL E+GLLPE+EV VL
Sbjct: 231 NALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVLVL 282
>gi|13129044 phosducin-like 3 [Homo sapiens]
Length = 239
Score = 63.9 bits (154), Expect = 1e-10
Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 42 IPPSKK-EILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCM 98
+PP + + L + + + R + S + M+++E E E +EDE + YRR+ +
Sbjct: 20 LPPKESLKELEEEAEEEQRILQQSVVKTYEDMTLEELEDHEDEFNEEDERAIEMYRRRRL 79
Query: 99 QDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCL 158
+ + ++G V E+ +GK +++ + K + +++H+Y+ GI C +N L+ L
Sbjct: 80 AEW-KATKLKNKFGEVLEI-SGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGL 137
Query: 159 AAEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFI 202
A ++P VKF IKA +T + LPT+ +Y G++ + FI
Sbjct: 138 ARKFPDVKF--IKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFI 179
>gi|51944950 phosducin-like 2 [Homo sapiens]
Length = 241
Score = 63.2 bits (152), Expect = 2e-10
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 42 IPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE--KEDENCLRKYRRQCMQ 99
I P K+E ++ R K++ + KM++ + + E +ED + YR++ +Q
Sbjct: 19 ILPPKEESKDEIEEMVLRLQKEAMVKPFEKMTLAQLKEAEDEFDEEDMQAVETYRKKRLQ 78
Query: 100 DMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLA 159
+ + L ++G + E+ +G Q++ + + +++H+Y I C +N L+ LA
Sbjct: 79 EW-KALKKKQKFGELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLA 136
Query: 160 AEYPIVKFCKIKASNTGAGDRFSLDVLPTLLIYKGGELISNFISVAE 206
++P KF +KA + + LPT+ +YK G++ + FI + E
Sbjct: 137 RKFPETKF--VKAIVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIE 181
>gi|95113651 glutaredoxin 3 [Homo sapiens]
Length = 335
Score = 39.3 bits (90), Expect = 0.003
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 114 VYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVKFCKIKAS 173
V E+ + QF E + + K + +VVH + C +N + LA E P V F K++A
Sbjct: 13 VEEVGSAGQFEELLRLKAK-SLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE 71
Query: 174 NT-GAGDRFSLDVLPTLLIYKGGELI 198
+++ + +PT L +K + I
Sbjct: 72 GVPEVSEKYEISSVPTFLFFKNSQKI 97
>gi|18104959 thioredoxin domain containing 9 [Homo sapiens]
Length = 226
Score = 38.1 bits (87), Expect = 0.007
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 95 RQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSS 154
R+ Q + LS G +G E+ + + F + +++ +V H Y D C L+
Sbjct: 56 RKAQQQKQEWLSKG--HGEYREIPSERDFFQEVKES---ENVVCHFYRDSTFRCKILDRH 110
Query: 155 LTCLAAEYPIVKFCKIKASNTG-AGDRFSLDVLPTLLIYKGGE 196
L L+ ++ KF K+ +R + V+PTL + K G+
Sbjct: 111 LAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGK 153
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 36.2 bits (82), Expect = 0.027
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 41 SIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDEN 88
S+PP+KKE Q SS QS++ K S++ V RK+ E+ KEDEN
Sbjct: 151 SLPPTKKE---QCSSTQSKSNKTSQKHVKRKV----LEVKSDSKEDEN 191
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 34.7 bits (78), Expect = 0.078
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 3 EAKSQSLEEDFEGQATHTGPKGVINDWRKFKLE-SQDSDSIPPSKKEILRQMSSPQSRNG 61
+A+ L+EDFE + K N K K + S++ +++ ++ L ++ Q
Sbjct: 1117 QAQIAELQEDFESE------KASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRT 1170
Query: 62 KDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGK 121
K +E K +++E H+ + + +R+ ++++ ++L R F LE K
Sbjct: 1171 KREQEVAELKKALEEETKNHEAQIQD--MRQRHATALEELSEQLEQAKR--FKANLEKNK 1226
Query: 122 QFLETIEKEL 131
Q LET KEL
Sbjct: 1227 QGLETDNKEL 1236
>gi|38348344 hypothetical protein LOC374355 [Homo sapiens]
Length = 258
Score = 32.0 bits (71), Expect = 0.51
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 197 LISNFISVAEQFAEEF--FAGDVESFLNEYGLLPEREVHVLEHTKIEEEDVE 246
L+ F ++ +Q EE F ++ F N+Y + +RE+ + E+ KIE D+E
Sbjct: 90 LLQTFEAIKKQMIEEEDKFIKEITDFNNDYEITKKRELLMKENVKIEISDLE 141
>gi|145977194 hypothetical protein LOC400793 isoform 2 [Homo
sapiens]
Length = 272
Score = 31.2 bits (69), Expect = 0.86
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 37 QDSDSIPPSKKEILRQMSSPQSRNGKDSKERV--SRKMSIQEYELIHKEKEDENCLR 91
Q DS P ++ ++ S P++ ++ + +V + ++S+ +LIHK+ +DE+ L+
Sbjct: 158 QAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLK 214
>gi|207028635 hypothetical protein LOC400793 isoform 1 [Homo
sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 0.86
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 37 QDSDSIPPSKKEILRQMSSPQSRNGKDSKERV--SRKMSIQEYELIHKEKEDENCLR 91
Q DS P ++ ++ S P++ ++ + +V + ++S+ +LIHK+ +DE+ L+
Sbjct: 201 QAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLK 257
>gi|4827046 U2 small nuclear RNA auxiliary factor 1-like 2 [Homo
sapiens]
Length = 482
Score = 31.2 bits (69), Expect = 0.86
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 28 DWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDE 87
+W + ++Q+ I K+E ++ Q R K+ E RK +E + ++KE E
Sbjct: 74 EWLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKEREEEEQKRQEKKEKE 133
Query: 88 NCLRKYRRQCMQDM 101
L+K Q ++
Sbjct: 134 EALQKMLDQAENEL 147
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 38 DSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQC 97
+++ +PP++KE + + E V +++ E + +E+++EN L
Sbjct: 1015 ETEKVPPTRKETRFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESS 1074
Query: 98 MQDMHQKLSFGP 109
Q Q +S GP
Sbjct: 1075 KQQESQPVSGGP 1086
>gi|150417969 voltage-gated sodium channel type V alpha isoform d
[Homo sapiens]
Length = 1998
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 38 DSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQC 97
+++ +PP++KE + + E V +++ E + +E+++EN L
Sbjct: 1015 ETEKVPPTRKETRFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESS 1074
Query: 98 MQDMHQKLSFGP 109
Q Q +S GP
Sbjct: 1075 KQQESQPVSGGP 1086
>gi|150417967 voltage-gated sodium channel type V alpha isoform c
[Homo sapiens]
Length = 2016
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 38 DSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQC 97
+++ +PP++KE + + E V +++ E + +E+++EN L
Sbjct: 1015 ETEKVPPTRKETRFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESS 1074
Query: 98 MQDMHQKLSFGP 109
Q Q +S GP
Sbjct: 1075 KQQESQPVSGGP 1086
>gi|239748090 PREDICTED: similar to sodium channel, voltage-gated,
type V, alpha (long QT syndrome 3) [Homo sapiens]
Length = 1637
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 38 DSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYRRQC 97
+++ +PP++KE + + E V +++ E + +E+++EN L
Sbjct: 716 ETEKVPPTRKETRFEEGEQPGQGTPGDPEPVCVPIAVAESDTDDQEEDEENSLGTEEESS 775
Query: 98 MQDMHQKLSFGP 109
Q Q +S GP
Sbjct: 776 KQQESQPVSGGP 787
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.4 bits (67), Expect = 1.5
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 2 EEAKSQSLEEDFEGQATHTGPKGVINDWRKFKLESQ--DSDSIPPSKKEILRQMSSPQSR 59
EE + Q EE G+ T R+ +LE Q + + ++++LR+ + R
Sbjct: 1052 EEEELQQEEEQLLGEERETR--------RRQELERQYRKEEELQQEEEQLLREEPEKRRR 1103
Query: 60 NGKDSKERVSRKMSIQEYELIHKEKED---ENCLRKYR--RQCMQDMHQKLSFGPRYGFV 114
++ + R ++ +E +L+ +E+E + R+YR + Q+ Q L P
Sbjct: 1104 QERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEEEVQQEEEQLLREEPEKRRR 1163
Query: 115 YELETGKQFLETIEKE 130
ELE + E +++E
Sbjct: 1164 QELERQYREEEELQQE 1179
>gi|20270307 coiled-coil domain containing 74A [Homo sapiens]
Length = 378
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 39 SDSIPPSKKEILRQMSS-------PQSRNGKDSKERVSRKMSIQEYELIHKEKEDE 87
+DS+ S + ++ +S+ P S N +DSK VS+K ++E L+H K D+
Sbjct: 164 ADSLSMSSFQSVKSISNSGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDK 219
>gi|223005859 WD repeat domain 67 isoform 1 [Homo sapiens]
Length = 1066
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 21 GPKGVINDWRKFKLE--SQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYE 78
G V N + KF ++ +Q+ + I + + LR+ + + K ++RV + Q+ E
Sbjct: 672 GQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQTVEDMQAKVDQQRVEDEAWYQKQE 731
Query: 79 LIHKEKEDENCLRKYRRQCMQDMHQKLS 106
L+ K +E + + M Q+L+
Sbjct: 732 LLRKAEETRREMLLQEEEKMIQQRQRLA 759
>gi|223005857 WD repeat domain 67 isoform 2 [Homo sapiens]
Length = 970
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 21 GPKGVINDWRKFKLE--SQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYE 78
G V N + KF ++ +Q+ + I + + LR+ + + K ++RV + Q+ E
Sbjct: 672 GQYPVFNQYPKFIVDYQTQERERIRNDELDYLRERQTVEDMQAKVDQQRVEDEAWYQKQE 731
Query: 79 LIHKEKEDENCLRKYRRQCMQDMHQKLS 106
L+ K +E + + M Q+L+
Sbjct: 732 LLRKAEETRREMLLQEEEKMIQQRQRLA 759
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 30.0 bits (66), Expect = 1.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 26 INDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDS 64
++D KFK+E +D D IPP E + S + DS
Sbjct: 16 VSDKIKFKIEEEDDDGIPPDSLERMDFKSEQEDMKQTDS 54
>gi|208610002 atlastin GTPase 2 isoform 2 [Homo sapiens]
Length = 583
Score = 30.0 bits (66), Expect = 1.9
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 73 SIQEYELIHKEKEDE----NCLRKYRRQCMQDMHQK----LSFGPR-----YGFVYELET 119
S+Q Y L +ED+ +Y R M++++QK L F R Y Y LE
Sbjct: 199 SVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPYEHSYGLEG 258
Query: 120 GKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVK 166
GKQFL EK L++ ++ K S+L C +P +K
Sbjct: 259 GKQFL---EKRLQVKQNQHEELQNVRKHIHNCFSNLGCFLLPHPGLK 302
>gi|208610000 atlastin GTPase 2 isoform 1 [Homo sapiens]
Length = 579
Score = 30.0 bits (66), Expect = 1.9
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 73 SIQEYELIHKEKEDE----NCLRKYRRQCMQDMHQK----LSFGPR-----YGFVYELET 119
S+Q Y L +ED+ +Y R M++++QK L F R Y Y LE
Sbjct: 199 SVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPYEHSYGLEG 258
Query: 120 GKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAAEYPIVK 166
GKQFL EK L++ ++ K S+L C +P +K
Sbjct: 259 GKQFL---EKRLQVKQNQHEELQNVRKHIHNCFSNLGCFLLPHPGLK 302
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 37 QDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKEKEDENCLRKYR-- 94
Q S PP E + + R G S+ S+K++ +E +I K K + K R
Sbjct: 192 QHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKEELPVIPKGKPKSGRVWKDRSK 251
Query: 95 ---RQCMQDMHQKLSFGPRYGFVYELETGKQFLETIEKE 130
Q +QD + S+ + E + K F +E+E
Sbjct: 252 KRFSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEE 290
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 35 ESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE-----KEDENC 89
+S S S +K SS SR +DSK SR S +E +KE +ED+
Sbjct: 247 KSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTE 306
Query: 90 LRKYRRQ 96
+ YRR+
Sbjct: 307 PKAYRRR 313
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 28.9 bits (63), Expect = 4.3
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 35 ESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERVSRKMSIQEYELIHKE-----KEDENC 89
+S S S +K SS SR +DSK SR S +E +KE +ED+
Sbjct: 247 KSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTE 306
Query: 90 LRKYRRQ 96
+ YRR+
Sbjct: 307 PKAYRRR 313
>gi|46409266 coiled-coil domain containing 74B [Homo sapiens]
Length = 380
Score = 28.9 bits (63), Expect = 4.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 39 SDSIPPSKKEILRQMSS-------PQSRNGKDSKERVSRKMSIQEYELIHKEKEDE 87
+DS+ S + ++ +S+ P S N +DSK V +K ++E L+H K D+
Sbjct: 164 ADSLSTSSFQSVKSISNSGKARPQPGSFNKQDSKADVPQKADLEEEPLLHNSKLDK 219
>gi|21361403 thioredoxin 2 precursor [Homo sapiens]
Length = 166
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 115 YELETGKQFLETIEKELKITTIVVHIYEDGIKGCDALNSSLTCLAA-EYPIVKFCKIKAS 173
+ ++ G F + + T +VV + C L L + A ++ V K+
Sbjct: 62 FNIQDGPDFQDRVVNSE--TPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID 119
Query: 174 N-TGAGDRFSLDVLPTLLIYKGGELISNFISVAEQFAEEFF 213
+ T + + +PT+L K G+++ F+ + ++ E F
Sbjct: 120 DHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAF 160
>gi|5032169 telomeric repeat binding factor 2 [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 7.3
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 9 LEEDFEGQATHTGPKGVINDWRKFKLESQDSDSIPPSKKEILRQMSSPQSRNGKDSKERV 68
LEED + T P +N SQ++ S PPSK +L Q P +N K K +
Sbjct: 364 LEEDSQS----TEPSAGLNS-------SQEAASAPPSKPTVLNQ-PLPGEKNPKVPKGKW 411
Query: 69 SRKMSIQEYELIHKEKE 85
+ ++E E +E E
Sbjct: 412 NSSNGVEEKETWVEEDE 428
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,572,357
Number of Sequences: 37866
Number of extensions: 420770
Number of successful extensions: 1143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 54
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.