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Search of human proteins with 122937418
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937418 similar to poly(A)binding protein nuclear-like 1
[Homo sapiens]
(289 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H... 601 e-172
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens] 179 3e-45
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens] 62 8e-10
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 52 5e-07
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 52 5e-07
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 52 5e-07
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 51 1e-06
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 50 2e-06
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 48 9e-06
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 48 9e-06
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 48 9e-06
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 48 9e-06
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 47 1e-05
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 47 1e-05
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 47 2e-05
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 47 2e-05
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 47 2e-05
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 47 2e-05
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 46 4e-05
gi|25121978 deleted in azoospermia-like [Homo sapiens] 45 6e-05
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 45 6e-05
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 45 6e-05
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 44 1e-04
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 44 2e-04
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 44 2e-04
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 44 2e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 44 2e-04
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 44 2e-04
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 43 3e-04
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 43 3e-04
>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
sapiens]
Length = 289
Score = 601 bits (1550), Expect = e-172
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED 60
MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
Sbjct: 1 MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED 60
Query: 61 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA 120
QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
Sbjct: 61 QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA 120
Query: 121 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC 180
AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
Sbjct: 121 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC 180
Query: 181 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH 240
DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
Sbjct: 181 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH 240
Query: 241 PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK 289
PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK
Sbjct: 241 PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK 289
>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
Length = 306
Score = 179 bits (453), Expect = 3e-45
Identities = 111/240 (46%), Positives = 144/240 (60%), Gaps = 26/240 (10%)
Query: 41 GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
GP G G +EEE+ +GD G + + D ELEAIK +V ME
Sbjct: 85 GPGPGSGAPGSQEEEEEPGLVEGDPG------------DGAIEDPELEAIKARVREME-- 130
Query: 101 EGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSA 160
E + +Q + E++ + P G P+ + EEK+EAD RS+YVGNVDYG +A
Sbjct: 131 EEAEKLKELQNEVEKQMNMSP----PPGNAG-PVIMSIEEKMEADARSIYVGNVDYGATA 185
Query: 161 EELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVL 220
EELEAHF CG V+RVTILCDKFSGHPKG+AYIEF+ K SV+ ++ LD+SLFRGR IKV+
Sbjct: 186 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 245
Query: 221 PKRTNFPGISSTDRGGLRGHPGSRGAPFP------HSGLQGRPRLRP-QGQNRTPAALTP 273
PKRTN PGIS+TDRG R +R + +SG RPR R +G+ R + +P
Sbjct: 246 PKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSP 305
>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
Length = 430
Score = 61.6 bits (148), Expect = 8e-10
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 140 EKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKG 199
E D RSV+VGN+ Y +E HF CG + V I+ DK +G KG+ Y+ F
Sbjct: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339
Query: 200 SVQAAVELDQSLFRGRVIKVL 220
SV A++L+ S GR ++V+
Sbjct: 340 SVHLALKLNNSELMGRKLRVM 360
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
L EE+ A+ ++V N+ Y + E+LE FS+ G + + D + PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
F + +V+A E+D +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
L EE+ A+ ++V N+ Y + E+LE FS+ G + + D + PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
F + +V+A E+D +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
L EE+ A+ ++V N+ Y + E+LE FS+ G + + D + PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
F + +V+A E+D +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 142 VEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSV 201
V+ RSV+VGN+ Y + E+L+ FS G V ++ D+ +G PKGY + E+ + +
Sbjct: 11 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70
Query: 202 QAAV-ELDQSLFRGRVIKV 219
+A+ L+ F GR ++V
Sbjct: 71 LSAMRNLNGREFSGRALRV 89
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAV- 205
RSV+VGN+ Y + E+L+ FS G V ++ D+ +G PKGY + E+ + + +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 206 ELDQSLFRGRVIKV 219
L+ F GR ++V
Sbjct: 76 NLNGREFSGRALRV 89
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
P+E ++D+ ++YV ++ + ++L F +CG V + I DK +G PKG
Sbjct: 298 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 355
Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
A + + + +AAVE D F+G +KV R P ++ RGGL G RG P
Sbjct: 356 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 412
Query: 249 PHSGLQGRP 257
P G G P
Sbjct: 413 PLRGGPGGP 421
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
P+E ++D+ ++YV ++ + ++L F +CG V + I DK +G PKG
Sbjct: 353 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 410
Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
A + + + +AAVE D F+G +KV R P ++ RGGL G RG P
Sbjct: 411 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 467
Query: 249 PHSGLQGRP 257
P G G P
Sbjct: 468 PLRGGPGGP 476
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
P+E ++D+ ++YV ++ + ++L F +CG V + I DK +G PKG
Sbjct: 359 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 416
Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
A + + + +AAVE D F+G +KV R P ++ RGGL G RG P
Sbjct: 417 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 473
Query: 249 PHSGLQGRP 257
P G G P
Sbjct: 474 PLRGGPGGP 482
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 48.1 bits (113), Expect = 9e-06
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
P+E ++D+ ++YV ++ + ++L F +CG V + I DK +G PKG
Sbjct: 354 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 411
Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
A + + + +AAVE D F+G +KV R P ++ RGGL G RG P
Sbjct: 412 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 468
Query: 249 PHSGLQGRP 257
P G G P
Sbjct: 469 PLRGGPGGP 477
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 47.4 bits (111), Expect = 1e-05
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFS 184
P + E +D+ +++V + G S +++ F + G + + + DK +
Sbjct: 217 PRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDT 276
Query: 185 GHPKGYAYIEFATKGSVQAAVE-LDQSLFRGRVIKV--LPKRTNFPGISSTDRGGLRGHP 241
G PKG A + F S +AA++ D F G +IKV +R F GG RG
Sbjct: 277 GKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMR-GGGSGGGRRGRG 335
Query: 242 GSRGAPFPHSGLQGR 256
G RG G QGR
Sbjct: 336 GYRG----RGGFQGR 346
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 47.4 bits (111), Expect = 1e-05
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFS 184
P + E +D+ +++V + G S +++ F + G + + + DK +
Sbjct: 220 PRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDT 279
Query: 185 GHPKGYAYIEFATKGSVQAAVE-LDQSLFRGRVIKV--LPKRTNFPGISSTDRGGLRGHP 241
G PKG A + F S +AA++ D F G +IKV +R F GG RG
Sbjct: 280 GKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMR-GGGSGGGRRGRG 338
Query: 242 GSRGAPFPHSGLQGR 256
G RG G QGR
Sbjct: 339 GYRG----RGGFQGR 349
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 47.0 bits (110), Expect = 2e-05
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 118 GTAAGQLL--SPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR 175
GTA+G S E+ G + + K E D +++G + + + ++L+ +FS+ GEV
Sbjct: 50 GTASGGTEGGSAESEGAKIDAS---KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVD 106
Query: 176 VTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKR 223
T+ D +G +G+ ++ F SV ++ + G+VI PKR
Sbjct: 107 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKR 152
Score = 34.7 bits (78), Expect = 0.10
Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 23/237 (9%)
Query: 41 GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
G EGG + E + + ++ ++D F+ L + + L D + ++ C ++
Sbjct: 55 GTEGGSAESEGAKIDASKNEEDEGKMFIGGL--SWDTTKKDLKDYFSKFGEVVDCTLKLD 112
Query: 101 EGTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSV 149
T R G V + +++E G+++ P+ + P +K+
Sbjct: 113 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKI------- 165
Query: 150 YVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL-- 207
+VG + E++ +F GEV + + D + +G+ +I F + V+ +E
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225
Query: 208 -DQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQGRPRLRPQG 263
+ L + + + K RGG G RG + QG QG
Sbjct: 226 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQG 282
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 47.0 bits (110), Expect = 2e-05
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 118 GTAAGQLL--SPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR 175
GTA+G S E+ G + + K E D +++G + + + ++L+ +FS+ GEV
Sbjct: 50 GTASGGTEGGSAESEGAKIDAS---KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVD 106
Query: 176 VTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKR 223
T+ D +G +G+ ++ F SV ++ + G+VI PKR
Sbjct: 107 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKR 152
Score = 33.9 bits (76), Expect = 0.17
Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 23/219 (10%)
Query: 41 GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
G EGG + E + + ++ ++D F+ L + + L D + ++ C ++
Sbjct: 55 GTEGGSAESEGAKIDASKNEEDEGKMFIGGL--SWDTTKKDLKDYFSKFGEVVDCTLKLD 112
Query: 101 EGTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSV 149
T R G V + +++E G+++ P+ + P +K+
Sbjct: 113 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKI------- 165
Query: 150 YVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL-- 207
+VG + E++ +F GEV + + D + +G+ +I F + V+ +E
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225
Query: 208 -DQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
+ L + + + K RGG G RG
Sbjct: 226 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRG 264
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY 192
PL P+++ D R+VYV + + +E F +CG V ++I K +G PKG+A+
Sbjct: 114 PLGERPKDE---DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAF 170
Query: 193 IEFATKGSVQAAVE 206
+EF TK A+E
Sbjct: 171 VEFETKEQAAKAIE 184
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 47.0 bits (110), Expect = 2e-05
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY 192
PL P+++ D R+VYV + + +E F +CG V ++I K +G PKG+A+
Sbjct: 114 PLGERPKDE---DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAF 170
Query: 193 IEFATKGSVQAAVE 206
+EF TK A+E
Sbjct: 171 VEFETKEQAAKAIE 184
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 45.8 bits (107), Expect = 4e-05
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
K + D +++G + + S ++L + SR GEV TI D +G +G+ ++ F S
Sbjct: 142 KNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 201
Query: 201 VQAAVELDQSLFRGRVIKVLPKR 223
V +EL + G++I PKR
Sbjct: 202 VDKVLELKEHKLDGKLID--PKR 222
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 109 VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFS 168
V + E +E G+L+ P+ P +KV +VG + S E+++ +F
Sbjct: 202 VDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKV-------FVGGLSPDTSEEQIKEYFG 254
Query: 169 RCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD-QSLFRGRV-IKVLPKRTNF 226
GE+ + + D + +G+ +I + + V+ +E + G+ IKV + +
Sbjct: 255 AFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314
Query: 227 PGISSTDRGGLRGHPGSRGAPFPHSGLQGRPRLRPQGQN 265
+GG G RG G +GR R QGQN
Sbjct: 315 RQQQQQQKGGRGAAAGGRG------GTRGRG--RGQGQN 345
>gi|25121978 deleted in azoospermia-like [Homo sapiens]
Length = 295
Score = 45.4 bits (106), Expect = 6e-05
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFAT 197
PE K+ + +V+VG +D E+ + F+R G V V I+ D+ +G KGY ++ F
Sbjct: 33 PEGKIMPN--TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFN 89
Query: 198 KGSVQAAVELDQSLFRGRVIKVLP 221
VQ VE Q F G+ +K+ P
Sbjct: 90 DVDVQKIVE-SQINFHGKKLKLGP 112
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 45.4 bits (106), Expect = 6e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
K E D ++VG + + S ++L+ +F++ GEV TI D +G +G+ +I F S
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 201 VQAAVELDQSLFRGRVI 217
V+ ++ + GRVI
Sbjct: 124 VEKVLDQKEHRLDGRVI 140
Score = 32.0 bits (71), Expect = 0.65
Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 42 PEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAE 101
P G + E ++ ++ ++D F+ L + ++ L D + ++ C ++
Sbjct: 48 PSGNQNGAEGDQINASKNEEDAGKMFVGGL--SWDTSKKDLKDYFTKFGEVVDCTIKMDP 105
Query: 102 GTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVY 150
T R G V++ +++E G+++ P+ + P +K+ +
Sbjct: 106 NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-MAMKKDPVKKI-------F 157
Query: 151 VGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
VG ++ + E++ +F GE+ + + D +G+ +I F + V+ +E
Sbjct: 158 VGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 45.4 bits (106), Expect = 6e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
K E D ++VG + + S ++L+ +F++ GEV TI D +G +G+ +I F S
Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123
Query: 201 VQAAVELDQSLFRGRVI 217
V+ ++ + GRVI
Sbjct: 124 VEKVLDQKEHRLDGRVI 140
Score = 32.0 bits (71), Expect = 0.65
Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 42 PEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAE 101
P G + E ++ ++ ++D F+ L + ++ L D + ++ C ++
Sbjct: 48 PSGNQNGAEGDQINASKNEEDAGKMFVGGL--SWDTSKKDLKDYFTKFGEVVDCTIKMDP 105
Query: 102 GTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVY 150
T R G V++ +++E G+++ P+ + P +K+ +
Sbjct: 106 NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-MAMKKDPVKKI-------F 157
Query: 151 VGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
VG ++ + E++ +F GE+ + + D +G+ +I F + V+ +E
Sbjct: 158 VGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 44.3 bits (103), Expect = 1e-04
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
++++V V+Y + +L F G + R+ ++ K SG P+GYA+IE+ + + +A +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 207 -----------LDQSLFRGRVIKVLPKRTNFPGISSTDRGG 236
+ + RGR +K R G+ T RGG
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
++VG + + EL +F + G V V ++ D P+G+ +I F + SV AV +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 209 QSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHP--GSRGAPFPHSGLQGRP 257
G+ ++V KR P S + G G GSR P +G G+P
Sbjct: 175 FHDIMGKKVEV--KRAE-PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
++VG +D+ + E L ++FS+ GEV I+ DK + +G+ +++F V +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 209 QSLFRGRVIKVLP 221
GR I P
Sbjct: 72 PHTLDGRNIDPKP 84
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
++VG + + EL +F + G V V ++ D P+G+ +I F + SV AV +
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174
Query: 209 QSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHP--GSRGAPFPHSGLQGRP 257
G+ ++V KR P S + G G GSR P +G G+P
Sbjct: 175 FHDIMGKKVEV--KRAE-PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
++VG +D+ + E L ++FS+ GEV I+ DK + +G+ +++F V +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 209 QSLFRGRVIKVLP 221
GR I P
Sbjct: 72 PHTLDGRNIDPKP 84
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 43.9 bits (102), Expect = 2e-04
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 136 GTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEF 195
G P VE S+ V N+ Y S + L F + G V V I D+++ +G+A++ F
Sbjct: 4 GRPPPDVEG-MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62
Query: 196 ATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQ 254
K + A++ +D ++ GR ++V R P S R RG P R +
Sbjct: 63 HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR---RGPPPRRYGGGGYGRRS 119
Query: 255 GRPRLRPQGQNRT 267
PR R + ++R+
Sbjct: 120 RSPRRRRRSRSRS 132
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 142 VEADHRS-VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
VEAD +++G ++ + LEA F + G + V ++ D+ + +G+A++ F +
Sbjct: 2 VEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61
Query: 201 VQAAV-ELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQG 255
+AA +++ G+ IKV + P S+ RG P SRG P G +G
Sbjct: 62 AKAAARDMNGKSLDGKAIKV--AQATKPAFESSRRG--PPPPRSRGRPRFLRGTRG 113
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 43.9 bits (102), Expect = 2e-04
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 46 EGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCA----MEQAE 101
+G+EE++ EE+ +D D D + + E D+E E I+ KV ++A
Sbjct: 221 KGREEEDMEEEENDDDDDDDDEEDGVFDDE--------DEEEENIESKVTKPVQIQKRAV 272
Query: 102 GTPRPPGVQQQAEEEEGTAAGQLLSP--------------ETVGCPLSGTPEEKVEAD-- 145
P P +EE+ + E +S + K+ +D
Sbjct: 273 KRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVN 332
Query: 146 -HRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQ 202
++V++ N+ + EEL + GE+ V I+ + H KG A+ +F T+ + Q
Sbjct: 333 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQ 390
Score = 36.2 bits (82), Expect = 0.034
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 148 SVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL 207
+++VG + +E+LE FS+ G V + ++ +K S +G+ Y+ F+ VQ A++
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK- 63
Query: 208 DQSLFRGRVIKV 219
+ + F G I V
Sbjct: 64 EITTFEGCKINV 75
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 43.1 bits (100), Expect = 3e-04
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
+ ++VG + L +F + G++ + I+ D+ SG +G+A++ F SV V
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 207 LDQSLFRG---RVIKVLPKRTNFPGISSTDRG--GLRGHPGSRGAPFPHSGLQGR 256
+G V K LPK+ SS+ RG G G RG F + GR
Sbjct: 165 QKYHTVKGHNCEVRKALPKQ-EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGR 218
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
S +P+E + R +++G + + + E L +HF + G + ++ D + +G+ ++
Sbjct: 4 SASPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 195 FATKGSVQAAVELDQSLFRGRVIKVLPKR 223
+AT V AA+ GRV++ PKR
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVE--PKR 88
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 43.1 bits (100), Expect = 3e-04
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
+ ++VG + L +F + G++ + I+ D+ SG +G+A++ F SV V
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 207 LDQSLFRG---RVIKVLPKRTNFPGISSTDRG--GLRGHPGSRGAPFPHSGLQGR 256
+G V K LPK+ SS+ RG G G RG F + GR
Sbjct: 165 QKYHTVKGHNCEVRKALPKQ-EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGR 218
Score = 42.0 bits (97), Expect = 6e-04
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
S +P+E + R +++G + + + E L +HF + G + ++ D + +G+ ++
Sbjct: 4 SASPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 195 FATKGSVQAAVELDQSLFRGRVIKVLPKR 223
+AT V AA+ GRV++ PKR
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVE--PKR 88
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,929,452
Number of Sequences: 37866
Number of extensions: 873424
Number of successful extensions: 8898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 5831
Number of HSP's gapped (non-prelim): 2119
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.