Guide to the Human Genome
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Name: HKR1 Sequence: fasta or formatted (659aa) NCBI GI: 32401441
Description:

GLI-Kruppel family member HKR1

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         20           1
 C cysteine            5.2         34           1
 D aspartate           1.8         12           1
 E glutamate           7.3         48           2
 F phenylalanine       4.7         31           1
 G glycine             8.5         56           2
 H histidine           6.4         42           1
 I isoleucine          2.9         19           1
 K lysine              7.0         46           1
 L leucine             7.4         49           2
 M methionine          1.2          8           1
 N asparagine          2.4         16           1
 P proline             5.0         33           2
 Q glutamine           5.8         38           3
 R arginine            8.0         53           2
 S serine              9.6         63           2
 T threonine           6.2         41           1
 V valine              4.1         27           2
 W tryptophan          1.4          9           1
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLI-Kruppel family member HKR1 
ZNF133                0.501   zinc finger protein 133 
ZNF133                0.501   zinc finger protein 133 
ZNF337                0.430   zinc finger protein 337 
ZNF169                0.427   zinc finger protein 169 
PRDM9                 0.425   PR domain containing 9 
ZNF343                0.400   zinc finger protein 343 
ZNF432                0.391   zinc finger protein 432 
ZNF615                0.373   zinc finger protein 615 
ZNF135                0.366   zinc finger protein 135 
LOC100287429          0.365   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.365   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.365   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.365   zinc finger protein 84 
ZNF84                 0.365   zinc finger protein 84 
ZNF182                0.362   zinc finger protein 21 isoform 2 
ZNF182                0.362   zinc finger protein 21 isoform 1 
ZNF184                0.360   zinc finger protein 184 
ZNF420                0.350   zinc finger protein 420 
ZNF12                 0.348   zinc finger protein 12 isoform b 
ZNF268                0.347   zinc finger protein 268 
ZNF567                0.345   zinc finger protein 567 
ZNF12                 0.342   zinc finger protein 12 isoform a 
ZNF160                0.342   zinc finger protein 160 
ZNF160                0.342   zinc finger protein 160 
ZNF160                0.342   zinc finger protein 160 
ZNF41                 0.341   zinc finger protein 41 
ZNF41                 0.341   zinc finger protein 41 
ZNF717                0.339   zinc finger protein 717 
ZNF568                0.339   zinc finger protein 568 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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