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Search of human proteins with 31377557
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31377557 hypothetical protein LOC131583 [Homo sapiens]
(423 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31377557 hypothetical protein LOC131583 [Homo sapiens] 844 0.0
gi|46409306 family with sequence similarity 43, member B [Homo s... 267 2e-71
gi|132626790 low density lipoprotein receptor adaptor protein 1 ... 57 3e-08
gi|154816208 phosphotyrosine interaction domain containing 1 iso... 47 3e-05
gi|40255260 phosphotyrosine interaction domain containing 1 isof... 47 3e-05
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 44 2e-04
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 44 3e-04
gi|31415880 protein phosphatase 1, regulatory (inhibitor) subuni... 44 3e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 44 3e-04
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 43 5e-04
gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-l... 39 0.007
gi|17975763 myelin transcription factor 1 [Homo sapiens] 39 0.012
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 38 0.020
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 38 0.020
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 38 0.020
gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-l... 38 0.020
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 38 0.020
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 38 0.020
gi|54144629 numb homolog isoform 4 [Homo sapiens] 38 0.020
gi|20070356 numb homolog isoform 3 [Homo sapiens] 38 0.020
gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens] 37 0.026
gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens] 37 0.026
gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-l... 37 0.026
gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens] 37 0.026
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 37 0.026
gi|171460958 nucleolar protein 10 [Homo sapiens] 37 0.026
gi|7705318 GULP, engulfment adaptor PTB domain containing 1 [Hom... 37 0.034
gi|113420848 PREDICTED: hypothetical protein [Homo sapiens] 37 0.034
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 37 0.034
gi|118600967 shroom family member 4 [Homo sapiens] 37 0.044
>gi|31377557 hypothetical protein LOC131583 [Homo sapiens]
Length = 423
Score = 844 bits (2181), Expect = 0.0
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MLPWKKHKFELLAEAPPRQASKPKGYAVSLHYSALSSLARACPEGALSRVGSMFRSKRKK 60
MLPWKKHKFELLAEAPPRQASKPKGYAVSLHYSALSSLARACPEGALSRVGSMFRSKRKK
Sbjct: 1 MLPWKKHKFELLAEAPPRQASKPKGYAVSLHYSALSSLARACPEGALSRVGSMFRSKRKK 60
Query: 61 LHITSEDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRM 120
LHITSEDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRM
Sbjct: 61 LHITSEDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRM 120
Query: 121 VHAEERALRRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEK 180
VHAEERALRRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEK
Sbjct: 121 VHAEERALRRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEK 180
Query: 181 AQAMALLLYQTSANALAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPP 240
AQAMALLLYQTSANALAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPP
Sbjct: 181 AQAMALLLYQTSANALAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPP 240
Query: 241 VERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQR 300
VERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQR
Sbjct: 241 VERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQR 300
Query: 301 ALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDL 360
ALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDL
Sbjct: 301 ALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDL 360
Query: 361 GELSFGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASADEP 420
GELSFGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASADEP
Sbjct: 361 GELSFGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASADEP 420
Query: 421 HSG 423
HSG
Sbjct: 421 HSG 423
>gi|46409306 family with sequence similarity 43, member B [Homo
sapiens]
Length = 329
Score = 267 bits (682), Expect = 2e-71
Identities = 148/297 (49%), Positives = 198/297 (66%), Gaps = 26/297 (8%)
Query: 1 MLPWKKHKFELLAEAPPRQASKPKGYAVSLHY-SALSSLARACPE----GALSRVGSMFR 55
MLPW+++KF L+ + K K + L Y S LSS R+CP+ L R+G +FR
Sbjct: 1 MLPWRRNKFVLVED---EAKCKAKSLSPGLAYTSLLSSFLRSCPDLLPDWPLERLGRVFR 57
Query: 56 SKRKKLHITSEDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSA 115
S+R+K+ + EDPTYTV YLGNA T+ A+GDGCTD AVGKIW++ G GTKMKLT+
Sbjct: 58 SRRQKVELNKEDPTYTVWYLGNAVTLHAKGDGCTDDAVGKIWARCGPGG-GTKMKLTLGP 116
Query: 116 QGIRMVHAEERAL-----RRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRC 170
GIRM E A RRP H YLL R+TYC AD R P+VFAWVYRH+ +HKAV+LRC
Sbjct: 117 HGIRMQPCERSAAGGSGGRRPAHAYLLPRITYCTADGRHPRVFAWVYRHQARHKAVVLRC 176
Query: 171 HAVLVSKPEKAQAMALLLYQTSANALAEFKRLKRRDDARHQQQELV----GAHTIPLVPL 226
HAVL+++ KA+A+A LL QT+ A ++FKRL+R+ DARH +Q+ + A ++P PL
Sbjct: 177 HAVLLARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPL 236
Query: 227 RKLLLHGPCCYK-PPVERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEE 282
R+ LL+ C Y+ PP ERSR AP+L SI E+ ++E +E++ EEQ G P+ E
Sbjct: 237 RR-LLNAKCAYRPPPSERSRGAPRLSSIQEE------DEEEEEDDAEEQEGGVPQRE 286
>gi|132626790 low density lipoprotein receptor adaptor protein 1
[Homo sapiens]
Length = 308
Score = 57.0 bits (136), Expect = 3e-08
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 13/174 (7%)
Query: 66 EDPTYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEA-GRQGTKMKLTVSAQGIRMVHAE 124
E +++ YLG Q +G+ + A+ +I + ++A G++ K+ L VS +GI +
Sbjct: 44 EGMLFSLKYLGMTLVEQPKGEELSAAAIKRIVATAKASGKKLQKVTLKVSPRGIILTDNL 103
Query: 125 ERALRRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEKAQAM 184
L +Y R++YC AD KVFA++ + + L CHA L +K + AQA+
Sbjct: 104 TNQLIENVSIY---RISYCTADKMHDKVFAYIAQSQHNQS---LECHAFLCTKRKMAQAV 157
Query: 185 ALLLYQTSANALAEF-----KRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHG 233
L + Q A EF + ++RD A + +++GA L+ L+ G
Sbjct: 158 TLTVAQAFKVAF-EFWQVSKEEKEKRDKASQEGGDVLGARQDCTPSLKSLVATG 210
>gi|154816208 phosphotyrosine interaction domain containing 1
isoform 2 [Homo sapiens]
Length = 217
Score = 47.0 bits (110), Expect = 3e-05
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 72 VLYLGNATTIQARG-DGCTDLAVGKIWSKSEAGRQGT---KMKLTVSAQGIRMVHAEERA 127
V YLG +T + GCT+ V ++W K R+ L + + + H + +
Sbjct: 60 VTYLGKVSTTGMQFLSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDHKG 119
Query: 128 LRRPGHL--YLLHRVTYCVADARL-PKVFAWVYRHELKHKAVMLRCHAVLVSKPEKAQAM 184
H+ + + R+ YC AD + P +FAWVYR + + CHAV +A+ +
Sbjct: 120 -EATVHMDTFQVARIAYCTADHNVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKL 178
Query: 185 ALLLYQTSANALAEFK---RLKRRDDARHQQQEL 215
A + + K R+ + QEL
Sbjct: 179 AHAMMEAFRKTFHSMKSDGRIHSNSSSEEVSQEL 212
>gi|40255260 phosphotyrosine interaction domain containing 1 isoform
1 [Homo sapiens]
Length = 248
Score = 47.0 bits (110), Expect = 3e-05
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 72 VLYLGNATTIQARG-DGCTDLAVGKIWSKSEAGRQGT---KMKLTVSAQGIRMVHAEERA 127
V YLG +T + GCT+ V ++W K R+ L + + + H + +
Sbjct: 91 VTYLGKVSTTGMQFLSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDHKG 150
Query: 128 LRRPGHL--YLLHRVTYCVADARL-PKVFAWVYRHELKHKAVMLRCHAVLVSKPEKAQAM 184
H+ + + R+ YC AD + P +FAWVYR + + CHAV +A+ +
Sbjct: 151 -EATVHMDTFQVARIAYCTADHNVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKL 209
Query: 185 ALLLYQTSANALAEFK---RLKRRDDARHQQQEL 215
A + + K R+ + QEL
Sbjct: 210 AHAMMEAFRKTFHSMKSDGRIHSNSSSEEVSQEL 243
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 44.3 bits (103), Expect = 2e-04
Identities = 48/161 (29%), Positives = 65/161 (40%), Gaps = 29/161 (18%)
Query: 208 ARHQQQELVGAH-TIPLVPLRKLLLHGPCCYKPPVERSRSAPKLG---SITEDLL----- 258
A+ + +EL A +P P + GP PP P G ++ EDL
Sbjct: 825 AKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININ 884
Query: 259 ------GEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFECGD 312
E+ E+E +EEEEEE+ E EEEE+ E + EEE E + E G+
Sbjct: 885 SSDEEEEEEEEEEEEEEEEEEEEEDFEEEEED---EEEYFEEEEEEEEEFEEEFEEEEGE 941
Query: 313 L-----------LDTLENGRGEALGGGGGSLGPGAGPPPLL 342
L + LE G GG + GA PPP L
Sbjct: 942 LEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTL 982
Score = 32.3 bits (72), Expect = 0.83
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 213 QELVGAHTIPLVPLRKLLLHGPCCYKPPVERSRSAPKLGSITEDLLGEQ-------LEQE 265
+E GA T P + L G VER +P G ++L+ E+ LE+E
Sbjct: 1015 EEERGADTAPTLAPEALPSQGE------VEREGESPAAGPPPQELVEEEPSAPPTLLEEE 1068
Query: 266 LQEEEEEEQP--EGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFEC 310
++ ++ QP E EEE E + +E+ + A ++A +C
Sbjct: 1069 TEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDC 1115
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 43.9 bits (102), Expect = 3e-04
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 234 PCCYKPP----VERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEG 289
PC Y PP V+R + L SI+ L E E ++E E + G P EE+ E
Sbjct: 71 PCAYTPPSLKAVQRIAES-HLQSISN--LNENQASEEEDELGELRELGYPREEDEEEEED 127
Query: 290 DPAEEEAEAQRALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAGPPPL 341
D EEE E +A ++L + G+ G G GP PPPL
Sbjct: 128 DEEEEEEEDSQA----------EVLKVIRQSAGQKTTCGQGLEGPWERPPPL 169
>gi|31415880 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 2 [Homo sapiens]
Length = 168
Score = 43.9 bits (102), Expect = 3e-04
Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 234 PCCYKPP----VERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEG 289
PC Y PP V+R + L SI+ L E E ++E E + G P EE+ E
Sbjct: 35 PCAYTPPSLKAVQRIAES-HLQSISN--LNENQASEEEDELGELRELGYPREEDEEEEED 91
Query: 290 DPAEEEAEAQRALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAGPPPL 341
D EEE E +A ++L + G+ G G GP PPPL
Sbjct: 92 DEEEEEEEDSQA----------EVLKVIRQSAGQKTTCGQGLEGPWERPPPL 133
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 43.9 bits (102), Expect = 3e-04
Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 31/135 (22%)
Query: 259 GEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFECGD------ 312
G++ E+E +E+EEEE+ + EEEE E + EEE E + A VA+ G
Sbjct: 731 GKEEEEEEEEDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVLGPRSGSSS 790
Query: 313 ------------------LLDTLENGRGEALGGGGGSLGPGAGPPPLLLGSASDMK---- 350
L D + RG A G L P G L+L S DMK
Sbjct: 791 EGSERSTDRSQEGAPSTLLADDQKESRGRA-SMADGDLEPEEGSKTLVLVSPGDMKKSPV 849
Query: 351 -AELSQLISDLGELS 364
AEL+ DLG L+
Sbjct: 850 TAELAP-DPDLGTLA 863
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 43.1 bits (100), Expect = 5e-04
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 69 TYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRMVHAEERAL 128
++ V YLG+ ++RG + AV K+ GR+ K L VSA G+R+V + + L
Sbjct: 79 SFPVRYLGHVEVEESRGMHVCEDAVKKL---KAMGRKSVKSVLWVSADGLRVVDDKTKDL 135
Query: 129 RRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSK 177
+ +V++C D L K F+++ R + + CH L K
Sbjct: 136 LVD---QTIEKVSFCAPDRNLDKAFSYICRDGTTRRWI---CHCFLALK 178
>gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 3 [Homo sapiens]
Length = 601
Score = 39.3 bits (90), Expect = 0.007
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)
Query: 262 LEQELQEEEEEEQPEGCPEEEE--NRAAEGDPAEEEAEAQRALVVAMHFECGDLLDTLEN 319
L E Q+E EQ E PE+EE + AE + +E + V+ + + +L + L
Sbjct: 338 LLNEGQKERLREQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGK 397
Query: 320 GRGEALGGG----GGSLGPGAGPPPLLLGSASDMKAELSQLISDLGELSFGNDVRTLQ-- 373
+ + GPGA P G +S L + +DL EL ++R +Q
Sbjct: 398 RLAHLVASAQKEPEAARGPGAPGPG---GESSSFMDHLEEK-ADLSELVKKQELRFIQYW 453
Query: 374 ---ADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASAD 418
++ LLS ++ + GGG A GD +A GA+AD
Sbjct: 454 QERCHQKIHHLLSEPGGRAKDAALGGGHHQAGAQGGDED-EAAGAAAD 500
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 38.5 bits (88), Expect = 0.012
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 240 PVERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
P +A + S + +L + E E +EEEEEE+ E EEEE E + EEE E +
Sbjct: 237 PQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEE 296
Score = 38.5 bits (88), Expect = 0.012
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
E S+ L ED E+ E+E +E+EEEE+ E EEEE E + EEE E +
Sbjct: 247 ESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 304
Score = 37.7 bits (86), Expect = 0.020
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRA 301
E+ E+E ++EEEEE+ E EEEE E + EEE E + A
Sbjct: 266 EEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEA 307
Score = 37.7 bits (86), Expect = 0.020
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRA 301
E+ E+E EEEEEE+ E EEEE E + EEE E + A
Sbjct: 267 EEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAA 308
Score = 33.5 bits (75), Expect = 0.37
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 255 EDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDP 291
ED E+ E+E +EEEEEE+ E EEEE E P
Sbjct: 273 EDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAP 309
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEE 294
E+ E+E +EEEEEE+ E EEEE E + A +
Sbjct: 276 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPD 310
Score = 32.0 bits (71), Expect = 1.1
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEE 295
E+ E+E +EEEEEE+ E EEEE A D +E
Sbjct: 280 EEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315
Score = 30.8 bits (68), Expect = 2.4
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 17/63 (26%)
Query: 254 TEDLLGEQL-----------------EQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEA 296
++DL + L E+E +EEEEEE+ E EEEE E + EEE
Sbjct: 232 SQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEE 291
Query: 297 EAQ 299
E +
Sbjct: 292 EEE 294
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 37.7 bits (86), Expect = 0.020
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 257 LLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
L+GE+ E E +EE+EE Q EG EEEE E + EEE E +
Sbjct: 105 LVGEE-ETEREEEDEEIQEEGGEEEEEEEEEEEEEEEEEEEEE 146
Score = 33.9 bits (76), Expect = 0.29
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 230 LLHGPCCYKPPVERSRSAPKL----GSITEDLLGEQLEQELQEEEEEEQPEGCPE----E 281
L H P + ER ++ G E+ E+ E+E +EEEEEEQP P+
Sbjct: 100 LFHYPLVGEEETEREEEDEEIQEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGGN 159
Query: 282 EENRAAEGDPAEEE 295
E + E D A EE
Sbjct: 160 HEQYSLEEDQALEE 173
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 37.7 bits (86), Expect = 0.020
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 257 LLGEQLEQELQEEEE--EEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFE----- 309
LL ++ L+E+EE +EQ E E E+ +P + E + A+ E
Sbjct: 326 LLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKE 385
Query: 310 ----CGDLLDTLENGRGE--ALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGEL 363
G +++TL + E A G+ G +G LL + KA+L + + L EL
Sbjct: 386 LQEKLGQVMETLTSAEKEPEAAVPASGTGGESSGLMDLL-----EEKADLREHVEKL-EL 439
Query: 364 SFGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASAD 418
F R + +V RLL+ ++ + GGG G +A GA+ D
Sbjct: 440 GF-IQYRRERCHQKVHRLLTEPGDSAKDASPGGGHHQAGPGQGGEEGEAAGAAGD 493
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 37.7 bits (86), Expect = 0.020
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 257 LLGEQLEQELQEEEE--EEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFE----- 309
LL ++ L+E+EE +EQ E E E+ +P + E + A+ E
Sbjct: 326 LLNRGQKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKE 385
Query: 310 ----CGDLLDTLENGRGE--ALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGEL 363
G +++TL + E A G+ G +G LL + KA+L + + L EL
Sbjct: 386 LQEKLGQVMETLTSAEKEPEAAVPASGTGGESSGLMDLL-----EEKADLREHVEKL-EL 439
Query: 364 SFGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASAD 418
F R + +V RLL+ ++ + GGG G +A GA+ D
Sbjct: 440 GF-IQYRRERCHQKVHRLLTEPGDSAKDASPGGGHHQAGPGQGGEEGEAAGAAGD 493
>gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 4 [Homo sapiens]
Length = 590
Score = 37.7 bits (86), Expect = 0.020
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 262 LEQELQEEEEEEQPEGCPEEEE--NRAAEGDPAEEEAEAQRALVVAMHFECGDLLDTLEN 319
L E Q+E EQ E PE+EE + AE + +E + V+ + + +L + L
Sbjct: 326 LLNEGQKERLREQQERLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGK 385
Query: 320 GRGEALGGGG-----GSLGPGAGPPPLLLGSASDMKAELSQLISDLGELSFGNDVRTLQ- 373
+ + GPGA P G +S L + +DL EL ++R +Q
Sbjct: 386 VKETVTSTPSKKEPEAARGPGAPGPG---GESSSFMDHLEEK-ADLSELVKKQELRFIQY 441
Query: 374 ----ADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASAD 418
++ LLS ++ + GGG A GD +A GA+AD
Sbjct: 442 WQERCHQKIHHLLSEPGGRAKDAALGGGHHQAGAQGGDED-EAAGAAAD 489
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 37.7 bits (86), Expect = 0.020
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 34/119 (28%)
Query: 238 KPPVERSRSAPKLGSITEDLLGEQLEQELQE----------EEEEEQPEGCPEEEENRAA 287
K PVE ++S ++G GEQ E+E +E E++EE+P+ PE+++ +
Sbjct: 684 KSPVEEAKSKAEVGK------GEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAES- 736
Query: 288 EGDPAEEEAEAQRALV---VAMHFECGDLLDTLENGR-------GEALGGGGGSLGPGA 336
P +EEA A+ + V +H E +T E G+ E GG GGS G+
Sbjct: 737 ---PVKEEAVAEVVTITKSVKVHLE----KETKEEGKPLQQEKEKEKAGGEGGSEEEGS 788
Score = 33.9 bits (76), Expect = 0.29
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 259 GEQLEQELQEEEEEE--------------QPEGCPEEEENRAAEGDPAEEEAEAQRA 301
GE+ E+E QEEEEEE + EG E+EE EG+ E EAE + A
Sbjct: 525 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGE-TEAEAEGEEA 580
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 238 KPPVERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEE 294
+P E A K + + E E+E ++EEEE Q E EEEE+ A+ D AEE
Sbjct: 498 EPEAEEEEVAAKKSPV-KATAPEVKEEEGEKEEEEGQEE---EEEEDEGAKSDQAEE 550
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQE-EEEEEQPEGCPEEEENRAAEGDPAEEEA 296
E+S L +ITE+L E++ + EE+EE+PE EEE AA+ P + A
Sbjct: 465 EKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEA---EEEEVAAKKSPVKATA 517
Score = 29.6 bits (65), Expect = 5.4
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 28/128 (21%)
Query: 196 LAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPPVERSRSAPKLG---S 252
+A +++L ++ R G+ T PL R + KP VE APKL
Sbjct: 398 IAAYRKLLEGEETRFST--FAGSITGPLYTHRPPITISSKIQKPKVE----APKLKVQHK 451
Query: 253 ITEDLLGE-QLEQELQEEEE--------------EEQPEGCPEEEENRAAEGDPAEEEAE 297
E+++ E ++E E E EE EE+ E E+EE AE EEE
Sbjct: 452 FVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAE----EEEVA 507
Query: 298 AQRALVVA 305
A+++ V A
Sbjct: 508 AKKSPVKA 515
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 37.7 bits (86), Expect = 0.020
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 34/119 (28%)
Query: 238 KPPVERSRSAPKLGSITEDLLGEQLEQELQE----------EEEEEQPEGCPEEEENRAA 287
K PVE ++S ++G GEQ E+E +E E++EE+P+ PE+++ +
Sbjct: 308 KSPVEEAKSKAEVGK------GEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAES- 360
Query: 288 EGDPAEEEAEAQRALV---VAMHFECGDLLDTLENGR-------GEALGGGGGSLGPGA 336
P +EEA A+ + V +H E +T E G+ E GG GGS G+
Sbjct: 361 ---PVKEEAVAEVVTITKSVKVHLE----KETKEEGKPLQQEKEKEKAGGEGGSEEEGS 412
Score = 33.9 bits (76), Expect = 0.29
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Query: 259 GEQLEQELQEEEEEE--------------QPEGCPEEEENRAAEGDPAEEEAEAQRA 301
GE+ E+E QEEEEEE + EG E+EE EG+ E EAE + A
Sbjct: 149 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGE-TEAEAEGEEA 204
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 238 KPPVERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEE 294
+P E A K + + E E+E ++EEEE Q E EEEE+ A+ D AEE
Sbjct: 122 EPEAEEEEVAAKKSPV-KATAPEVKEEEGEKEEEEGQEE---EEEEDEGAKSDQAEE 174
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQE-EEEEEQPEGCPEEEENRAAEGDPAEEEA 296
E+S L +ITE+L E++ + EE+EE+PE EEE AA+ P + A
Sbjct: 89 EKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEA---EEEEVAAKKSPVKATA 141
Score = 29.6 bits (65), Expect = 5.4
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 28/128 (21%)
Query: 196 LAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPPVERSRSAPKLG---S 252
+A +++L ++ R G+ T PL R + KP VE APKL
Sbjct: 22 IAAYRKLLEGEETRFST--FAGSITGPLYTHRPPITISSKIQKPKVE----APKLKVQHK 75
Query: 253 ITEDLLGE-QLEQELQEEEE--------------EEQPEGCPEEEENRAAEGDPAEEEAE 297
E+++ E ++E E E EE EE+ E E+EE AE EEE
Sbjct: 76 FVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAE----EEEVA 131
Query: 298 AQRALVVA 305
A+++ V A
Sbjct: 132 AKKSPVKA 139
>gi|54144629 numb homolog isoform 4 [Homo sapiens]
Length = 592
Score = 37.7 bits (86), Expect = 0.020
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 69 TYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRMVHAEERAL 128
++ V YLG+ ++RG + AV ++ G++ K L VSA G+R+V + + L
Sbjct: 38 SFPVKYLGHVEVDESRGMHICEDAVKRL---KATGKKAVKAVLWVSADGLRVVDEKTKDL 94
Query: 129 RRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSK 177
+ +V++C D + F+++ R + + CH + K
Sbjct: 95 IVD---QTIEKVSFCAPDRNFDRAFSYICRDGTTRRWI---CHCFMAVK 137
>gi|20070356 numb homolog isoform 3 [Homo sapiens]
Length = 640
Score = 37.7 bits (86), Expect = 0.020
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 69 TYTVLYLGNATTIQARGDGCTDLAVGKIWSKSEAGRQGTKMKLTVSAQGIRMVHAEERAL 128
++ V YLG+ ++RG + AV ++ G++ K L VSA G+R+V + + L
Sbjct: 38 SFPVKYLGHVEVDESRGMHICEDAVKRL---KATGKKAVKAVLWVSADGLRVVDEKTKDL 94
Query: 129 RRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSK 177
+ +V++C D + F+++ R + + CH + K
Sbjct: 95 IVD---QTIEKVSFCAPDRNFDRAFSYICRDGTTRRWI---CHCFMAVK 137
>gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]
Length = 285
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 262 LEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRA 301
+E+ ++E EEEEQ E EE+E A E AE E E RA
Sbjct: 4 IEEVVEEYEEEEQEEAAVEEQEEAAEEDAEAEAETEETRA 43
Score = 32.3 bits (72), Expect = 0.83
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
E+ E QEE EE E E EE RA E + EE EA+
Sbjct: 17 EEAAVEEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAE 56
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGD--PAEEEAEAQRALVVAMHF 308
+Q ++ E E+E+ EE R E + AE+EA ++AL MHF
Sbjct: 137 QQRIRNEREKERQNRLAEERARREEEENRRKAEDEARKKKALSNMMHF 184
Score = 28.9 bits (63), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALV 303
+ E + E EE + E EEEE + AE P EE R+ +
Sbjct: 31 DAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFM 71
>gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]
Length = 288
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 262 LEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRA 301
+E+ ++E EEEEQ E EE+E A E AE E E RA
Sbjct: 4 IEEVVEEYEEEEQEEAAVEEQEEAAEEDAEAEAETEETRA 43
Score = 32.3 bits (72), Expect = 0.83
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
E+ E QEE EE E E EE RA E + EE EA+
Sbjct: 17 EEAAVEEQEEAAEEDAEAEAETEETRAEEDEEEEEAKEAE 56
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGD--PAEEEAEAQRALVVAMHF 308
+Q ++ E E+E+ EE R E + AE+EA ++AL MHF
Sbjct: 137 QQRIRNEREKERQNRLAEERARREEEENRRKAEDEARKKKALSNMMHF 184
Score = 28.9 bits (63), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALV 303
+ E + E EE + E EEEE + AE P EE R+ +
Sbjct: 31 DAEAEAETEETRAEEDEEEEEAKEAEDGPMEESKPKPRSFM 71
>gi|239745132 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 [Homo sapiens]
Length = 602
Score = 37.4 bits (85), Expect = 0.026
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 257 LLGEQLEQELQEEEE--EEQPEGCPEEEENRAAEGDP----AEEEAEAQRAL-----VVA 305
LL ++ E+ +QE+EE +Q E E+ ++ P E E + AL V
Sbjct: 333 LLNQRQEERIQEQEERLRKQEERIQEQHKSLQQLAKPQSVFEEPNNENKNALQLEQQVKE 392
Query: 306 MHFECGDLLDTLENGRGE-ALGGGGGSLGPGAGPPPLLLGSASDMKAELSQLISDLGELS 364
+ + G++ +T + + E G G+ GPG + + KA+LS+L+ EL
Sbjct: 393 LQEKLGEVKETETSAQKEPEAARGPGAPGPGGESSSFM--DHLEEKADLSELVKK-KELC 449
Query: 365 FGNDVRTLQADLRVTRLLSGDSTGSESSIEGGGPDATSATAGDSSRQADGASAD 418
F + R + + LLS ++ + GGG A GD +A GA+AD
Sbjct: 450 FIHHWRD-RCHQKTHHLLSEPGGRAKDAALGGGHHQAGAQGGDEG-EAAGAAAD 501
>gi|151101404 prothymosin, alpha isoform 2 [Homo sapiens]
Length = 110
Score = 37.4 bits (85), Expect = 0.026
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRA 301
E R AP G+ E+ ++ + E+ EEEEE E EEEE E + +E+ EA+ A
Sbjct: 28 ENGRDAPANGNANEENGEQEADNEVDEEEEEGGEE--EEEEEEGDGEEEDGDEDEEAESA 85
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 37.4 bits (85), Expect = 0.026
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGD-PAEEEAEAQR 300
E+ G E+ GE+ E+E + E EEE+ EG EE E EG+ EEE E
Sbjct: 807 EKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGE 866
Query: 301 ALVVAMHFECGDLLDTLENGRGEALGGGGGSLGPGAG 337
E G+ + G GE G G G G G
Sbjct: 867 GEEEGEEGE-GEGEEEEGEGEGEEEGEGEGEEEEGEG 902
Score = 35.8 bits (81), Expect = 0.075
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 259 GEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFECGDLLDTLE 318
GE+ E E + EEE E+ EG EEEE EG+ E E E + E
Sbjct: 912 GEEEEGEGKGEEEGEEGEGEGEEEEGE-GEGEDGEGEGEEEEGEWEGEEEE--------G 962
Query: 319 NGRGEALGGGGGSLGPGAG 337
G GE G G G G G G
Sbjct: 963 EGEGEEEGEGEGEEGEGEG 981
Score = 34.7 bits (78), Expect = 0.17
Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 196 LAEFKRLKRRDDARHQQQELVGAHTIPLVPLRKLLLHGPCCYKPPVERSRSAPKLGSITE 255
LAE + K+RD +Q+E H ER++ + G E
Sbjct: 696 LAEKEEWKKRDGEEQEQKEREQGHQ--------------------KERNQEMEEGG---E 732
Query: 256 DLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAE---AQRALVVAMHFECGD 312
+ GE E+E EEEEE+ EE E EG+ +EE E +RA E GD
Sbjct: 733 EEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGD 792
Query: 313 LLDTLE---NGRGEALGGGG 329
+ E GRGE GG
Sbjct: 793 QGEGEEEETEGRGEEKEEGG 812
Score = 34.7 bits (78), Expect = 0.17
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 255 EDLLGEQLEQELQEEEEEEQPEGCPEEE---ENRAAEGDPAEEEAEAQRALVVAMHFECG 311
ED GE E+E + E EEE+ EG EEE E EG+ EEE E + E G
Sbjct: 942 EDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEG------EEEEG 995
Query: 312 DLLDTLENGRGEALGGGGG 330
+ + E G GE G G G
Sbjct: 996 E-EEGEEEGEGEEEGEGEG 1013
Score = 32.3 bits (72), Expect = 0.83
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 251 GSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFEC 310
G E+ GE E E + EEEE + EG EE E E EEE E + E
Sbjct: 964 GEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGE-----GEEEEE 1018
Query: 311 GDLLDTLENGRGEALG 326
G++ +E GE G
Sbjct: 1019 GEVEGEVEGEEGEGEG 1034
Score = 31.6 bits (70), Expect = 1.4
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 251 GSITEDLLGEQLEQELQEEEEEEQPEGCPEE---EENRAAEGDPAEEEAEAQ 299
G + ++ GE+ E E +EEE EE+ E +E EENR + EEE + Q
Sbjct: 1019 GEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQ 1070
Score = 30.8 bits (68), Expect = 2.4
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 259 GEQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHFECGDLLDTLE 318
GE+ +E + E EEE+ EG EEE EG+ EEE E + E G+ E
Sbjct: 867 GEEEGEEGEGEGEEEEGEGEGEEE----GEGEGEEEEGEGEGE-------EEGE--GEGE 913
Query: 319 NGRGEALGGGGGSLGPGAGPPPLLLGSASDMKAE 352
GE G G G G G G D + E
Sbjct: 914 EEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGE 947
Score = 29.6 bits (65), Expect = 5.4
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
E+ E E++ E E E+ EG EEEE EG+ E+E E +
Sbjct: 1015 EEEEGEVEGEVEGEEGEGEGEEEEGEE-EGEEREKEGEGE 1053
>gi|171460958 nucleolar protein 10 [Homo sapiens]
Length = 688
Score = 37.4 bits (85), Expect = 0.026
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGDPAE--EEAEAQRALV 303
+QEL+E+EEEE+PEG P + E+ + D EE QR L+
Sbjct: 526 QQELREKEEEEEPEGKPSDAESSESSDDEKAWVEEVRKQRRLL 568
>gi|7705318 GULP, engulfment adaptor PTB domain containing 1 [Homo
sapiens]
Length = 304
Score = 37.0 bits (84), Expect = 0.034
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 70 YTVLYLGNATTIQARGDGCTDLAVGKI----WSKSEAGRQGTKMKLTVSAQGIRMVHAEE 125
Y +LG+ Q +G AV K+ K G++ K++L +S G++++ +
Sbjct: 27 YNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIKKSEGQKIPKVELQISIYGVKILEPKT 86
Query: 126 RALRRPGHLYLLHRVTYCVADARLPKVFAWVYRHELKHKAVMLRCHAVLVSKPEK-AQAM 184
+ ++ H LHR+++C D ++F ++ + +K H V EK A+ +
Sbjct: 87 KEVQ---HNCQLHRISFCADDKTDKRIFTFICKDSESNK------HLCYVFDSEKCAEEI 137
Query: 185 ALLLYQTSANALAEFKRLKRRDDARHQQ 212
L + Q A +F +D +Q
Sbjct: 138 TLTIGQAFDLAYRKFLESGGKDVETRKQ 165
>gi|113420848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 109
Score = 37.0 bits (84), Expect = 0.034
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 242 ERSRSAPKLGSITEDLLGEQLEQELQEEEEEEQPEGCPEEEENRAAEG---DPAEEEAEA 298
E R AP G+ E E EQE +E +EE E EEEE + +G D EEEAE+
Sbjct: 28 ENGRDAPANGNANE----ENGEQEADKEVDEEGEESGEEEEEEKEGDGEEEDGDEEEAES 83
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 37.0 bits (84), Expect = 0.034
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 219 HTIPLVPLRKLLLHGPCCYKPPVERSRSAPKLGSITE--DLLGEQLEQELQEEEEEEQPE 276
+ +P++P+ +P +R P LG E + GE+ E+EL+EEEEEE+
Sbjct: 1726 YLMPILPVPSSSWEDGKGKQPKEDRPEHYPGLGKKEEGEEEKGEEEEEELEEEEEEEEE- 1784
Query: 277 GCPEEEENRAAEGDPAEEEAEAQRALV 303
EEEE E + EEE + + V
Sbjct: 1785 --TEEEELGKEEIEEKEEERDEKEEKV 1809
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQ 299
+Q +Q+ Q+EEEEE+ E EEEE E + EEE Q
Sbjct: 1123 QQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEELPPQ 1162
Score = 34.7 bits (78), Expect = 0.17
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAE 297
+Q +Q+ Q++++EE+ E EEEE E + AEEE E
Sbjct: 1120 QQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEE 1157
Score = 32.7 bits (73), Expect = 0.64
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 263 EQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAEAQRALVVAMHF 308
+Q+ Q++++++Q E EEEE E + EEEAE + + +F
Sbjct: 1119 QQQKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEELPPQYF 1164
Score = 32.3 bits (72), Expect = 0.83
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 260 EQLEQELQEEEEEEQPEGCPEEEENRAAEGDPAEEEAE 297
++ +Q+ Q+++EEE+ E EEEE E + EEE E
Sbjct: 1121 QKQQQQQQKQQEEEEEEEEEEEEEEEEEEEEAEEEEEE 1158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,797,152
Number of Sequences: 37866
Number of extensions: 892326
Number of successful extensions: 13635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 234
Number of HSP's that attempted gapping in prelim test: 8703
Number of HSP's gapped (non-prelim): 2931
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.