Search of human proteins with 30578410

Search of human proteins with 30578410

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|30578410 source of immunodominant MHC-associated peptides
[Homo sapiens]
         (826 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|30578410 source of immunodominant MHC-associated peptides [Ho...  1699   0.0  
gi|22749415 integral membrane protein 1 [Homo sapiens]                867   0.0  
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]    34   0.63 
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]     34   0.63 
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]     34   0.63 
gi|154146199 sal-like 3 [Homo sapiens]                                 33   1.1  
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    33   1.1  
gi|7657615 podocin [Homo sapiens]                                      33   1.4  
gi|38016907 stomatin isoform b [Homo sapiens]                          33   1.4  
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  32   2.4  
gi|38016911 stomatin isoform a [Homo sapiens]                          32   3.1  
gi|122937263 fat mass and obesity associated [Homo sapiens]            31   5.4  
gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]                  31   5.4  
gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]                   31   5.4  
gi|239752532 PREDICTED: similar to Putative uncharacterized prot...    30   7.0  
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo...    30   7.0  
gi|27477074 interleukin 17B receptor precursor [Homo sapiens]          30   9.2  
gi|221316599 chromogranin B precursor [Homo sapiens]                   30   9.2  
gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]      30   9.2  

>gi|30578410 source of immunodominant MHC-associated peptides [Homo
           sapiens]
          Length = 826

 Score = 1699 bits (4401), Expect = 0.0
 Identities = 826/826 (100%), Positives = 826/826 (100%)

Query: 1   MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSG 60
           MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSG
Sbjct: 1   MAEPSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSG 60

Query: 61  GLSQPAGWQSLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFY 120
           GLSQPAGWQSLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFY
Sbjct: 61  GLSQPAGWQSLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFY 120

Query: 121 EFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGL 180
           EFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGL
Sbjct: 121 EFLNWFDERAWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGL 180

Query: 181 TSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKS 240
           TSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKS
Sbjct: 181 TSISTFLLTRELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKS 240

Query: 241 VKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIV 300
           VKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIV
Sbjct: 241 VKTGSVFWTMCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIV 300

Query: 301 GLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLA 360
           GLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLA
Sbjct: 301 GLILSMQIPFVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLA 360

Query: 361 AGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHI 420
           AGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHI
Sbjct: 361 AGAVFLSVIYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHI 420

Query: 421 LVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVF 480
           LVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVF
Sbjct: 421 LVCTFPAGLWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVF 480

Query: 481 EHYLGDDMKRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVT 540
           EHYLGDDMKRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVT
Sbjct: 481 EHYLGDDMKRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVT 540

Query: 541 MLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHAR 600
           MLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHAR
Sbjct: 541 MLMLMLLMMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHAR 600

Query: 601 VMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYKIMRTLDVDYVLVI 660
           VMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYKIMRTLDVDYVLVI
Sbjct: 601 VMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYKIMRTLDVDYVLVI 660

Query: 661 FGGVIGYSGDDINKFLWMVRIAEGEHPKDIRESDYFTPQGEFRVDKAGSPTLLNCLMYKM 720
           FGGVIGYSGDDINKFLWMVRIAEGEHPKDIRESDYFTPQGEFRVDKAGSPTLLNCLMYKM
Sbjct: 661 FGGVIGYSGDDINKFLWMVRIAEGEHPKDIRESDYFTPQGEFRVDKAGSPTLLNCLMYKM 720

Query: 721 SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET 780
           SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET
Sbjct: 721 SYYRFGEMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNRET 780

Query: 781 LDHKPRVTNIFPKQKYLSKKTTKRKRGYIKNKLVFKKGKKISKKTV 826
           LDHKPRVTNIFPKQKYLSKKTTKRKRGYIKNKLVFKKGKKISKKTV
Sbjct: 781 LDHKPRVTNIFPKQKYLSKKTTKRKRGYIKNKLVFKKGKKISKKTV 826


>gi|22749415 integral membrane protein 1 [Homo sapiens]
          Length = 705

 Score =  867 bits (2240), Expect = 0.0
 Identities = 428/712 (60%), Positives = 531/712 (74%), Gaps = 30/712 (4%)

Query: 70  SLLSFTILFLAWLAGFSSRLFAVIRFESIIHEFDPWFNYRSTHHLASHGFYEFLNWFDER 129
           +LL   IL +A +  FS+RLFAV+RFES+IHEFDP+FNYR+T  LA  GFY+F NWFD+R
Sbjct: 16  TLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDR 75

Query: 130 AWYPLGRIVGGTVYPGLMITAGLIHWILNTLNITVHIRDVCVFLAPTFSGLTSISTFLLT 189
           AWYPLGRI+GGT+YPGLMIT+  I+ +L+  +IT+ IR+VCVFLAP FS  T+I T+ LT
Sbjct: 76  AWYPLGRIIGGTIYPGLMITSAAIYHVLHFFHITIDIRNVCVFLAPLFSSFTTIVTYHLT 135

Query: 190 RELWNQGAGLLAACFIAIVPGYISRSVAGSFDNEGIAIFALQFTYYLWVKSVKTGSVFWT 249
           +EL + GAGLLAA  IA+VPGYISRSVAGS+DNEGIAIF +  TYY+W+K+VKTGS+ W 
Sbjct: 136 KELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSICWA 195

Query: 250 MCCCLSYFYMVSAWGGYVFIINLIPLHVFVLLLMQRYSKRVYIAYSTFYIVGLILSMQIP 309
             C L+YFYMVS+WGGYVF+INLIPLHV VL+L  R+S R+Y+AY T Y +G ILSMQI 
Sbjct: 196 AKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQIS 255

Query: 310 FVGFQPIRTSEHMAAAGVFALLQAYAFLQYLRDRLTKQEFQTLFFLGVSLAAGAVFLSV- 368
           FVGFQP+ +SEHMAA GVF L Q +AF+ YLR +L  Q+F+ LF   +SL  G V L+V 
Sbjct: 256 FVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISL-VGFVLLTVG 314

Query: 369 IYLTYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTFPAG 428
             L  TG I+PW+GRFYSL D  YAK +IPIIASVSEHQPTTW S++FDL +LV  FP G
Sbjct: 315 ALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVG 374

Query: 429 LWFCIKNINDERVFVALYAISAVYFAGVMVRLMLTLTPVVCMLSAIAFSNVFEHYLGD-D 487
           L++C  N++D R+F+ +Y ++++YF+ VMVRLML L PV+C+LS I  S V   Y+ + D
Sbjct: 375 LYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLD 434

Query: 488 MKRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGPNIKSIVTMLMLMLL 547
           + R                     DK  K ++ +T   K E      + S + ++M   L
Sbjct: 435 ISRP--------------------DKKSKKQQDSTYPIKNE------VASGMILVMAFFL 468

Query: 548 MMFAVHCTWVTSNAYSSPSVVLASYNHDGTRNILDDFREAYFWLRQNTDEHARVMSWWDY 607
           + +  H TWVTS AYSSPS+VL++   DG+R I DDFREAY+WLR NT E A+VMSWWDY
Sbjct: 469 ITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWDY 528

Query: 608 GYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSNETAAYKIMRTLDVDYVLVIFGGVIGY 667
           GYQI  MANRT LVDNNTWNN+HI+ VG+AM+S E  AY+IMR LDV YVLVIFGG+ GY
Sbjct: 529 GYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGY 588

Query: 668 SGDDINKFLWMVRI-AEGEHPKDIRESDYFTPQGEFRVDKAGSPTLLNCLMYKMSYYRFG 726
           S DDINKFLWMVRI    +  K I+E+DY+TP GEFRVD+ GSP LLNCLMYKM YYRFG
Sbjct: 589 SSDDINKFLWMVRIGGSTDTGKHIKENDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFG 648

Query: 727 EMQLDFRTPPGFDRTRNAEIGNKDIKFKHLEEAFTSEHWLVRIYKVKAPDNR 778
           ++  + + PPGFDR RNAEIGNKD +   LEEA+T+EHWLVRIYKVK  DNR
Sbjct: 649 QVYTEAKRPPGFDRVRNAEIGNKDFELDVLEEAYTTEHWLVRIYKVKDLDNR 700


>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
          Length = 516

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 36  PGAQCAHKAAGGAAP-PKPAPAGLSGGLSQPAGWQSLLSFTILFLAW 81
           PG   AH  AG  AP P PAPAG  G L   A  QS L+  +L  +W
Sbjct: 168 PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASW 214


>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
          Length = 503

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 36  PGAQCAHKAAGGAAP-PKPAPAGLSGGLSQPAGWQSLLSFTILFLAW 81
           PG   AH  AG  AP P PAPAG  G L   A  QS L+  +L  +W
Sbjct: 155 PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASW 201


>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
          Length = 474

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 36  PGAQCAHKAAGGAAP-PKPAPAGLSGGLSQPAGWQSLLSFTILFLAW 81
           PG   AH  AG  AP P PAPAG  G L   A  QS L+  +L  +W
Sbjct: 155 PGPFLAHTHAGLQAPGPLPAPAGDKGDLLLQAVQQSCLADHLLTASW 201


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 4   PSAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSGGLS 63
           P+AP +   +   S P SG    G    G   P A  A  AA   A P PAPA  S   S
Sbjct: 280 PAAPAAFEGAQPLSRPESGASTPG----GPAEPSAPAAPSAAPAPAAPAPAPAPQSAASS 335

Query: 64  QP 65
           QP
Sbjct: 336 QP 337


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 17/43 (39%), Positives = 18/43 (41%)

Query: 30  RHGHHGPGAQCAHKAAGGAAPPKPAPAGLSGGLSQPAGWQSLL 72
           R GH  P   C   A G A  P P P   +G    P G QS L
Sbjct: 844 RQGHQAPEGFCQRSAPGPAICPAPCPGQAAGLDPSPCGGQSYL 886


>gi|7657615 podocin [Homo sapiens]
          Length = 383

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 411 WVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443
           W+     L  ++ TFP  +WFC+K + + ERV +
Sbjct: 103 WLLVLISLLFIIMTFPFSIWFCVKVVQEYERVII 136


>gi|38016907 stomatin isoform b [Homo sapiens]
          Length = 123

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 408 PTTWVSFFFDLHILVCTFPAGLWFCIKNINDERVFVALYAISAVYF------AGVMVRLM 461
           P  W+   F     V TFP  +W CIK I  E    A  A+           A + +R +
Sbjct: 29  PCGWILVAFSFLFTVITFPISIWMCIKVIAAEGEMNASRALKEASMVITESPAALQLRYL 88

Query: 462 LTLTPV 467
            TLT +
Sbjct: 89  QTLTTI 94


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 600  RVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVG-------KAMSSNETAAYKIMRT- 651
            RV   WD G     +      +D+N W++ H+A  G       K MSSN+ +  K  ++ 
Sbjct: 2175 RVAFLWDLGSGSTRLEFPDFPIDDNRWHSIHVARFGNIGSLSVKEMSSNQKSPTKTSKSP 2234

Query: 652  -----LDVDYVLVIFGGVIG 666
                 LDV+   ++F G +G
Sbjct: 2235 GTANVLDVNNSTLMFVGGLG 2254


>gi|38016911 stomatin isoform a [Homo sapiens]
          Length = 288

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 408 PTTWVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443
           P  W+   F     V TFP  +W CIK I + ER  +
Sbjct: 29  PCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAII 65


>gi|122937263 fat mass and obesity associated [Homo sapiens]
          Length = 505

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)

Query: 372 TYTGYIAPWSGRFYSLWDTGYAKIHIPIIASVSEHQPTTWVSFFFDLHILVCTF 425
           T+  Y+ P    FY  W   Y K+ +   +SVSE         F  LH   C F
Sbjct: 26  TWLPYLTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLF 79


>gi|221316744 stomatin-like 3 isoform 2 [Homo sapiens]
          Length = 282

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 411 WVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443
           W+ F     +++ TFP  +W C+K I + ER  V
Sbjct: 20  WILFSLSFLLVIITFPISIWMCLKIIKEYERAVV 53


>gi|21686995 stomatin-like 3 isoform 1 [Homo sapiens]
          Length = 291

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 411 WVSFFFDLHILVCTFPAGLWFCIKNIND-ERVFV 443
           W+ F     +++ TFP  +W C+K I + ER  V
Sbjct: 29  WILFSLSFLLVIITFPISIWMCLKIIKEYERAVV 62


>gi|239752532 PREDICTED: similar to Putative uncharacterized
          protein FLJ46348, partial [Homo sapiens]
          Length = 178

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 30 RHGHHGPGAQCAHKAAGGAAPPKPAPAGLSGGLSQPAGWQSLLSFTIL 77
          R G  GPG++       GAAP  PAPA    G    A W+ L ++ +L
Sbjct: 10 RRGLLGPGSRL------GAAPAGPAPASRPSGGQAHASWRPLPAWRLL 51


>gi|87239981 tankyrase, TRF1-interacting ankyrin-related
          ADP-ribose polymerase [Homo sapiens]
          Length = 1327

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)

Query: 24 MALGNSRHGHHGPGAQCAHKAAGGAAPPKPAPAGLSGGLS 63
          MA       HH    Q    A G +APP P P  LS GL+
Sbjct: 1  MAASRRSQHHHHHHQQQLQPAPGASAPPPPPPPPLSPGLA 40


>gi|27477074 interleukin 17B receptor precursor [Homo sapiens]
          Length = 502

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 37  GAQCA-HKAAGGAAPPKPAPAGLSGGLSQPAGWQSLLSFTILFLAWL 82
           G+ C  HK      P    P  L    S+P GW  LL  ++L   W+
Sbjct: 258 GSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLVATWV 304


>gi|221316599 chromogranin B precursor [Homo sapiens]
          Length = 677

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 480 FEHYLG---DDMKRENPPVEDSSDEDDKRNQGNLYDKAGKVRKHATEQEKTEEGLGP 533
           +E Y G   ++ +   P  E+S DE+DKRN  +L  +  K+     E+ + E GL P
Sbjct: 359 WERYRGRGSEEYRAPRPQSEESWDEEDKRNYPSL--ELDKMAHGYGEESEEERGLEP 413


>gi|21735419 zinc finger, CCHC domain containing 14 [Homo sapiens]
          Length = 949

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 5   SAPESKHKSSLNSSPWSGLMALGNSRHGHHGPGAQCAHKAAGGAAPPKPAP 55
           S PES   SS      +G +   N  H HH       H      APP+PAP
Sbjct: 737 SVPESSFYSSSGGGGSTGNIPASNPNHHHH-------HHHQQPPAPPQPAP 780


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,391,129
Number of Sequences: 37866
Number of extensions: 1432057
Number of successful extensions: 6074
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6053
Number of HSP's gapped (non-prelim): 28
length of query: 826
length of database: 18,247,518
effective HSP length: 111
effective length of query: 715
effective length of database: 14,044,392
effective search space: 10041740280
effective search space used: 10041740280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.