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Search of human proteins with 30425462
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425462 hypothetical protein LOC284185 [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425462 hypothetical protein LOC284185 [Homo sapiens] 566 e-162
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 3e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 3e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 3e-04
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.014
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 37 0.018
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 37 0.023
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 37 0.023
gi|91208420 bassoon protein [Homo sapiens] 35 0.051
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 35 0.051
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 35 0.067
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 35 0.088
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 35 0.088
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239752128 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|41281612 zinc finger protein 828 [Homo sapiens] 34 0.11
gi|19924097 synapsin I isoform Ib [Homo sapiens] 34 0.11
gi|19924099 synapsin I isoform Ia [Homo sapiens] 34 0.15
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 33 0.20
gi|9966841 cell death regulator aven [Homo sapiens] 33 0.20
gi|4503657 forkhead box H1 [Homo sapiens] 33 0.26
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239749872 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo ... 33 0.26
>gi|30425462 hypothetical protein LOC284185 [Homo sapiens]
Length = 264
Score = 566 bits (1459), Expect = e-162
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MPRSLKRAQLRSLLPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTA 60
MPRSLKRAQLRSLLPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTA
Sbjct: 1 MPRSLKRAQLRSLLPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTA 60
Query: 61 VREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRG 120
VREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRG
Sbjct: 61 VREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRG 120
Query: 121 GQGGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQEK 180
GQGGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQEK
Sbjct: 121 GQGGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQEK 180
Query: 181 GRAEGRQARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRDPGGHLWEQGHV 240
GRAEGRQARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRDPGGHLWEQGHV
Sbjct: 181 GRAEGRQARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRDPGGHLWEQGHV 240
Query: 241 SPCARFNQGHSCGSPKVSHTTWVS 264
SPCARFNQGHSCGSPKVSHTTWVS
Sbjct: 241 SPCARFNQGHSCGSPKVSHTTWVS 264
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.5 bits (101), Expect = 2e-04
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 119 RGGQGGRWTRRAEGPREGTFA-----EQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGR 173
R + G W R GPR + A RP ++ +R A GPP G G
Sbjct: 42 RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVE 101
Query: 174 GQTGQEKGRAEGRQARKSACKCPRKGPNPGPWTR-----AAAWWGRLEGAKASAKGEQVR 228
+G+E R++ R+ R+ PR+ P P P R AA R +G ++ +G
Sbjct: 102 AASGEE--RSQPRRPRRPP-PAPRR-PRPAPGRRKSLYEAAPLLTREKGGRSGRRG---- 153
Query: 229 DPGGHLWEQGHVS 241
D GG W GH +
Sbjct: 154 DRGGSGWSHGHTA 166
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.5 bits (101), Expect = 2e-04
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 119 RGGQGGRWTRRAEGPREGTFA-----EQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGR 173
R + G W R GPR + A RP ++ +R A GPP G G
Sbjct: 42 RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVE 101
Query: 174 GQTGQEKGRAEGRQARKSACKCPRKGPNPGPWTR-----AAAWWGRLEGAKASAKGEQVR 228
+G+E R++ R+ R+ PR+ P P P R AA R +G ++ +G
Sbjct: 102 AASGEE--RSQPRRPRRPP-PAPRR-PRPAPGRRKSLYEAAPLLTREKGGRSGRRG---- 153
Query: 229 DPGGHLWEQGHVS 241
D GG W GH +
Sbjct: 154 DRGGSGWSHGHTA 166
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.7 bits (99), Expect = 3e-04
Identities = 69/243 (28%), Positives = 89/243 (36%), Gaps = 27/243 (11%)
Query: 15 PRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQR 74
P P P A T + + G P +VE + EGP A P
Sbjct: 405 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPP-GPAGPAG 463
Query: 75 PTRPSKALWPAQMSAAPAIRLGQMVPG--DTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG 132
P P P R PG GL GP GT+L +R G G ++G
Sbjct: 464 IMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG-----SKG 518
Query: 133 PREGTFAEQRPHFQSSGAQQESRLAM-GPP-PLGL----GDAAGDGRGQTGQEKGRAEGR 186
P T + Q Q+ Q++R+A+ GPP P+GL G G G E G G
Sbjct: 519 P---TISAQEA--QAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGP 572
Query: 187 QARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRD--PG-----GHLWEQGH 239
Q + P PG R A GR + AKG++ D PG GH E+G
Sbjct: 573 QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 632
Query: 240 VSP 242
P
Sbjct: 633 QGP 635
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.7 bits (99), Expect = 3e-04
Identities = 69/243 (28%), Positives = 89/243 (36%), Gaps = 27/243 (11%)
Query: 15 PRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQR 74
P P P A T + + G P +VE + EGP A P
Sbjct: 354 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPP-GPAGPAG 412
Query: 75 PTRPSKALWPAQMSAAPAIRLGQMVPG--DTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG 132
P P P R PG GL GP GT+L +R G G ++G
Sbjct: 413 IMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG-----SKG 467
Query: 133 PREGTFAEQRPHFQSSGAQQESRLAM-GPP-PLGL----GDAAGDGRGQTGQEKGRAEGR 186
P T + Q Q+ Q++R+A+ GPP P+GL G G G E G G
Sbjct: 468 P---TISAQEA--QAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGP 521
Query: 187 QARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRD--PG-----GHLWEQGH 239
Q + P PG R A GR + AKG++ D PG GH E+G
Sbjct: 522 QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 581
Query: 240 VSP 242
P
Sbjct: 582 QGP 584
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.7 bits (99), Expect = 3e-04
Identities = 69/243 (28%), Positives = 89/243 (36%), Gaps = 27/243 (11%)
Query: 15 PRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQR 74
P P P A T + + G P +VE + EGP A P
Sbjct: 393 PTSPPNEEFGPGVPAETDITETSINGHGAYGEKGQKGEPAVVEPGMLVEGPP-GPAGPAG 451
Query: 75 PTRPSKALWPAQMSAAPAIRLGQMVPG--DTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG 132
P P P R PG GL GP GT+L +R G G ++G
Sbjct: 452 IMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDG-----SKG 506
Query: 133 PREGTFAEQRPHFQSSGAQQESRLAM-GPP-PLGL----GDAAGDGRGQTGQEKGRAEGR 186
P T + Q Q+ Q++R+A+ GPP P+GL G G G E G G
Sbjct: 507 P---TISAQEA--QAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESG-DPGP 560
Query: 187 QARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRD--PG-----GHLWEQGH 239
Q + P PG R A GR + AKG++ D PG GH E+G
Sbjct: 561 QGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGP 620
Query: 240 VSP 242
P
Sbjct: 621 QGP 623
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 119 RGGQGGRWTRRAEGPREGTFA-----EQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGR 173
R + G W R GPR + A RP ++ +R A GPP G G
Sbjct: 42 RARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVE 101
Query: 174 GQTGQEKGRAEGRQARKSACKCPRKGPNPGPWTR-----AAAWWGRLEGAKASAKGEQVR 228
+G+E R++ R+ R+ PR+ P P P R AA R +G ++ +G
Sbjct: 102 AASGEE--RSQPRRPRRPP-PAPRR-PRPAPGRRKSLYEAAPLLTREKGGRSGRRG---- 153
Query: 229 DPGGHLWEQGHVS 241
D G W GH +
Sbjct: 154 DRGDSGWSHGHTA 166
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.4 bits (85), Expect = 0.014
Identities = 64/242 (26%), Positives = 93/242 (38%), Gaps = 35/242 (14%)
Query: 21 SHTQPWYRAAHPTTSPTA------ASRD-VHPASGAVPG-------PWLVEGTAVREGPQ 66
++ P+Y PT+SP+ A++D ++ G G P ++E + EGP
Sbjct: 415 NYYDPYY---DPTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPP 471
Query: 67 LQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPG--DTRGLWGPQGTLLTWTYRGGQGG 124
+ P P + P P R PG GL GP GT+L +R G GG
Sbjct: 472 GPEGPAGLPGPPG-TMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGG 530
Query: 125 RWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPP--PLGL----GDAAGDGRGQTGQ 178
++GP Q+ Q++RLA+ P P+GL G G G
Sbjct: 531 --DAGSKGPMVSA-----QESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKG 583
Query: 179 EKGRAEGRQARKSACKCPRKGPNPGPWTRAAAWWGRLEGAKASAKGEQVRDP-GGHLWEQ 237
E G G Q + P PG RA + R + KG++ D G E+
Sbjct: 584 EPGDV-GPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEK 642
Query: 238 GH 239
GH
Sbjct: 643 GH 644
Score = 34.3 bits (77), Expect = 0.11
Identities = 48/195 (24%), Positives = 69/195 (35%), Gaps = 35/195 (17%)
Query: 15 PRPPAVSHT--QPWYRA-AHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAV 71
P PP V+ QP + P P + +P + +PGP G +GP + +
Sbjct: 693 PGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGL 752
Query: 72 PQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAE 131
P P P + P + GQ P GPQG + RG +G R +
Sbjct: 753 PGMPGADGPPGHPGK-EGPPGEKGGQGPP-------GPQGPIGYPGPRGVKGADGIRGLK 804
Query: 132 GPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQEKGRAEGRQARKS 191
G + + P F+ + R +GPP RG+ G E + G
Sbjct: 805 GTKGEKGEDGFPGFKGDMGIKGDRGEIGPP---------GPRGEDGPEGPKGRG------ 849
Query: 192 ACKCPRKGPN--PGP 204
GPN PGP
Sbjct: 850 -------GPNGDPGP 857
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 37.0 bits (84), Expect = 0.018
Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 33/133 (24%)
Query: 46 ASGAVPGPWLVEGTAVREGPQLQDAV------------------------PQRPTRPSKA 81
A A GPW++ G + G + + P RP RPS
Sbjct: 7 AGRAGRGPWIIRGASRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRPARPSHL 66
Query: 82 LWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG----PREGT 137
LWP ++ P PGD R P GT + + G ++ G P +
Sbjct: 67 LWPKRLPGRPG-----RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHS 121
Query: 138 FAEQRPHFQSSGA 150
A +RP SS A
Sbjct: 122 PAHERPSPASSAA 134
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 37.0 bits (84), Expect = 0.018
Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 33/133 (24%)
Query: 46 ASGAVPGPWLVEGTAVREGPQLQDAV------------------------PQRPTRPSKA 81
A A GPW++ G + G + + P RP RPS
Sbjct: 7 AGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHL 66
Query: 82 LWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG----PREGT 137
LWP ++ P PGD R P GT + + G ++ G P +
Sbjct: 67 LWPKRLPGRPG-----RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHS 121
Query: 138 FAEQRPHFQSSGA 150
A +RP SS A
Sbjct: 122 PAHERPSPASSAA 134
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 37.0 bits (84), Expect = 0.018
Identities = 33/133 (24%), Positives = 46/133 (34%), Gaps = 33/133 (24%)
Query: 46 ASGAVPGPWLVEGTAVREGPQLQDAV------------------------PQRPTRPSKA 81
A A GPW++ G + G + + P RP RPS
Sbjct: 7 AGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHL 66
Query: 82 LWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEG----PREGT 137
LWP ++ P PGD R P GT + + G ++ G P +
Sbjct: 67 LWPKRLPGRPG-----RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHS 121
Query: 138 FAEQRPHFQSSGA 150
A +RP SS A
Sbjct: 122 PAHERPSPASSAA 134
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.023
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 25/191 (13%)
Query: 75 PTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRW-TRRAEGP 133
P S +P Q+ + ++ L +P TR L P +L+ + G G R T P
Sbjct: 267 PHALSSPFFPKQLGSL-SLELPARLP--TRCLPSPPRSLVAPSESGSAGRRGGTNGVATP 323
Query: 134 REGTFAEQRPHFQSSGAQQESRLAMGPPP---LGLGDAAGDGRGQTGQEKGRAEGRQARK 190
RE ++ + G + + ++ PPP G G+ G G + GRA R+ R
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGG-SRADVTAGRARPRRRRW 382
Query: 191 SACKCPRKGPNPG------PWTRAAAWWGRLEGAKASAKGEQVRDPGGHLWEQGHVSPCA 244
+ R G PG P AA L GA A PGG L E G +SP
Sbjct: 383 EPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGA---------PGGRL-ELG-LSPGT 431
Query: 245 RFNQGHSCGSP 255
R +G P
Sbjct: 432 RLIRGGGAAVP 442
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 36.6 bits (83), Expect = 0.023
Identities = 53/191 (27%), Positives = 75/191 (39%), Gaps = 25/191 (13%)
Query: 75 PTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRW-TRRAEGP 133
P S +P Q+ + ++ L +P TR L P +L+ + G G R T P
Sbjct: 267 PHALSSPFFPKQLGSL-SLELPARLP--TRCLPSPPRSLVAPSESGSAGRRGGTNGVATP 323
Query: 134 REGTFAEQRPHFQSSGAQQESRLAMGPPP---LGLGDAAGDGRGQTGQEKGRAEGRQARK 190
RE ++ + G + + ++ PPP G G+ G G + GRA R+ R
Sbjct: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGG-SRADVTAGRARPRRRRW 382
Query: 191 SACKCPRKGPNPG------PWTRAAAWWGRLEGAKASAKGEQVRDPGGHLWEQGHVSPCA 244
+ R G PG P AA L GA A PGG L E G +SP
Sbjct: 383 EPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGA---------PGGRL-ELG-LSPGT 431
Query: 245 RFNQGHSCGSP 255
R +G P
Sbjct: 432 RLIRGGGAAVP 442
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.4 bits (80), Expect = 0.051
Identities = 68/236 (28%), Positives = 90/236 (38%), Gaps = 37/236 (15%)
Query: 24 QPWYRAAHPTTSPTAASRDVHPASG-------AVPGPWLVEGTAVREG-PQLQDAV---- 71
QP Y ++ + P+ AS H AS A GP ++ A + PQLQ
Sbjct: 3696 QPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHSGPAALQSKAEPQAQPQLQGRQAAPG 3755
Query: 72 PQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAE 131
PQ+ PS P+ +A+ + Q G GL PQ L R Q + T R
Sbjct: 3756 PQQSQSPSSRQIPSG-AASRQPQTQQQQQG--LGLQPPQQALTQ--ARLQQQSQPTTRGS 3810
Query: 132 GPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQEKGRAEGRQARKS 191
P A +P + Q A GP P G A QT KG A+ Q ++
Sbjct: 3811 AP-----AASQP---AGKPQPGPSTATGPQPAGPPRAE-----QTNGSKGTAKAPQQGRA 3857
Query: 192 ACKCPRKGPNPGPWTRAAAWWGRLEGAKA---SAKGEQVRD---PGGHLWEQGHVS 241
P GP P +A A G GA A A GE V PGG + G ++
Sbjct: 3858 PQAQPAPGPGPA-GVKAGARPGGTPGAPAGQPGADGESVFSKILPGGAAEQAGKLT 3912
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 35.4 bits (80), Expect = 0.051
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 16 RPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQRP 75
+PP + + T P AA +HPASGA WL GP +++ +P P
Sbjct: 1641 KPPGLDPPFKDKKLKESTPIPPAAENKLHPASGADSKDWLA-------GPHMKEVLPASP 1693
Query: 76 ----TRPSKALWPAQMSAAPA 92
+RP+ P + + P+
Sbjct: 1694 RPDQSRPTGVPTPTSVLSCPS 1714
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.0 bits (79), Expect = 0.067
Identities = 52/195 (26%), Positives = 62/195 (31%), Gaps = 8/195 (4%)
Query: 18 PAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVP-GPWLVEGTAVREG---PQLQDAVPQ 73
P S P A P R P P GP L +G +G PQ PQ
Sbjct: 604 PHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQ 663
Query: 74 RPTRPSKALWPAQMSAAPAIR--LGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAE 131
RP P M P LG P +G GPQG + G QG +
Sbjct: 664 GLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPP 723
Query: 132 GPREGTFAEQRPHFQSSGAQQESRLAMGPP-PLGLGDAAGDGRGQTGQEKGRAEGRQAR- 189
GP+ + P Q R GPP P G+ G Q +G G R
Sbjct: 724 GPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRG 783
Query: 190 KSACKCPRKGPNPGP 204
PR+ P P
Sbjct: 784 MQGPPGPRENQGPAP 798
Score = 32.0 bits (71), Expect = 0.57
Identities = 49/204 (24%), Positives = 65/204 (31%), Gaps = 35/204 (17%)
Query: 17 PPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVP-GPWLVEGTAVREGPQL-------- 67
PP Q R HP+ P + P G P P+ EG + P +
Sbjct: 880 PPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGA 939
Query: 68 QDAVPQRPTRPSKALWP--AQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGR 125
Q +P P P + P P +G M GP+ +RGGQ R
Sbjct: 940 QGRIP--PLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCR 997
Query: 126 WTRRAEGPR---------------EGTFAEQRPHFQSSGA---QQESRLAMGP----PPL 163
GP + F + F+ G Q+E GP PP
Sbjct: 998 GPPDRRGPHPDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPD 1057
Query: 164 GLGDAAGDGRGQTGQEKGRAEGRQ 187
+ GDGRG G EGR+
Sbjct: 1058 HREFSEGDGRGAARGPPGAWEGRR 1081
Score = 29.6 bits (65), Expect = 2.8
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 45 PASGA-VPGPWLVEGTAVREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDT 103
P+SG + GP G +GP Q + PS+ + P GQ P
Sbjct: 576 PSSGTPLLGPQPFPG----QGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGP 631
Query: 104 RGLWGPQGTLLTWTYRGGQGGRWTRRAEGPREGTFAEQRPH 144
+G GPQG L G QG + +GP +G Q H
Sbjct: 632 QGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMH 672
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 34.7 bits (78), Expect = 0.088
Identities = 52/170 (30%), Positives = 66/170 (38%), Gaps = 22/170 (12%)
Query: 9 QLRSLLPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQ 68
Q S L RP + +P +AAH P + + PG LVEG EGP
Sbjct: 250 QQPSRLHRP---QNQEPQSQAAH---GPRGLKGEKGEPAVLEPG-MLVEGPPGPEGPAGL 302
Query: 69 DAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTR 128
P P P + P R G +PG G GP GT L +R G GG
Sbjct: 303 IGPPGIQGNPGPVGDPGERG--PPGRAG--LPGSD-GAPGPPGTSLMLPFRFGSGG---- 353
Query: 129 RAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDG-RGQTG 177
G + A Q Q+ Q++RLA+ PP +G G GQ G
Sbjct: 354 ---GDKGPVVAAQEA--QAQAILQQARLALRGPPGPMGYTGRPGPLGQPG 398
Score = 31.6 bits (70), Expect = 0.74
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 17/182 (9%)
Query: 2 PRSLKRAQLRSLLPRPPAV---SHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEG 58
PR L + +P PP V Q + P P + P + +PGP G
Sbjct: 501 PRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG 560
Query: 59 TAVREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTY 118
+GPQ + +P P S P G+ P T+G GP G Y
Sbjct: 561 PHGEKGPQGKPGLPGMPG-----------SDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY 609
Query: 119 ---RGGQGGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQ 175
RG +G R +G + + P F+ + R +G P D +G+
Sbjct: 610 PGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGR 669
Query: 176 TG 177
TG
Sbjct: 670 TG 671
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 34.7 bits (78), Expect = 0.088
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 42 DVHPASGAVP-----------GPW-LVEGTAVREGPQLQDAVPQRPTRPSKALWPAQMSA 89
+ H SG P G W L E + V E + QD+ P RP W Q
Sbjct: 612 ETHTVSGLQPNTIYLFLVRAVGAWGLSEPSPVSEPVRTQDSSPSRPVEDP---WRGQQGL 668
Query: 90 AP-AIRLGQMVPGDTRGL---W---GP----QGTLLTWTYRGGQGGRWT 127
A A+RL + + R L W GP QG ++W G +GG WT
Sbjct: 669 AEVAVRLQEPIVLGPRTLQVSWTVDGPVQLVQGFRVSWRVAGPEGGSWT 717
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 163 LGLGDAAGD-----GRGQTGQEKGRAEGRQARKSACKCPRKGPN-PGPWTRAAAWWGRLE 216
L GD AG+ G +GQ + GR + + + R GP P P R AA WGR
Sbjct: 6 LSWGDQAGERARAPSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSG 65
Query: 217 GAKASAKGEQVRDPGGHLWEQGHVSPCAR 245
G A+ G GG L + P R
Sbjct: 66 GGPAAQSG----GDGGGLPRRAGAEPGGR 90
>gi|239752128 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 34.3 bits (77), Expect = 0.11
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 123 GGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGL--GDAAGDGRGQTGQEK 180
G RW+R A G + +S G +Q LAM P GL A G Q+ ++
Sbjct: 9 GPRWSREAPPEARGGWTMWLGRRESRGCRQGRGLAMKPEDQGLVAVTARGLQAAQSISDE 68
Query: 181 GRAEGRQARKSACKCPRKGPNPGPWTRAAA---WWGR---LEGAKASAKGEQVRDPGGHL 234
G ++ R R+ ++G +P RA A GR A+A+ E+ R L
Sbjct: 69 GSSQWRCRRQRQPGSEQRGSSPSSNGRARAPPQTTGRALVTPSARAAPTSERKRGRPHSL 128
Query: 235 WEQGHVSPCA 244
W G S A
Sbjct: 129 WATGTRSDSA 138
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 34.3 bits (77), Expect = 0.11
Identities = 37/146 (25%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 4 SLKRAQLRSLLPRPPA----------VSHTQPWYRAAHPTT-SPTAASRDVHPASGAVPG 52
S K A + S P+ PA +S+ +P ++ P T P +AS P A P
Sbjct: 196 SQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPE 255
Query: 53 PWLVEGTAVREGPQLQDAVPQRPTRPSKALWPAQMSAAPAI--RLGQMVPGDTRGLW--G 108
PW A E + P +PS + P PA+ + P + G W G
Sbjct: 256 PWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPG 315
Query: 109 PQGTLLTW-TYRGGQGGRWTRRAEGP 133
P G+ W + G W P
Sbjct: 316 PPGSPRPWKSNPSASSGPWKPAKPAP 341
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 34.3 bits (77), Expect = 0.11
Identities = 50/175 (28%), Positives = 63/175 (36%), Gaps = 18/175 (10%)
Query: 14 LPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQ 73
LP P + QP +AA PT SR V GA P PQ Q A P
Sbjct: 508 LPSPTSAPQ-QPASQAAPPTQGQGRQSRPVAGGPGAPP----AARPPASPSPQRQ-AGPP 561
Query: 74 RPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEGP 133
+ TR + PA A+ A GQ G + GP G T + Q G R GP
Sbjct: 562 QATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP----TRQASQAGPVPR--TGP 615
Query: 134 REGTFAEQRPHFQSSGAQQESRLAMGP----PPLGLGDAAGDGRGQTGQEKGRAE 184
T + RP + + +LA P PP A G Q +A+
Sbjct: 616 --PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQAQ 668
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.15
Identities = 49/171 (28%), Positives = 62/171 (36%), Gaps = 18/171 (10%)
Query: 14 LPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQ 73
LP P + QP +AA PT SR V GA P PQ Q A P
Sbjct: 508 LPSPTSAPQ-QPASQAAPPTQGQGRQSRPVAGGPGAPP----AARPPASPSPQRQ-AGPP 561
Query: 74 RPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEGP 133
+ TR + PA A+ A GQ G + GP G T + Q G R GP
Sbjct: 562 QATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP----TRQASQAGPVPR--TGP 615
Query: 134 REGTFAEQRPHFQSSGAQQESRLAMGP----PPLGLGDAAGDGRGQTGQEK 180
T + RP + + +LA P PP A G Q + +
Sbjct: 616 --PTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQ 664
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 33.5 bits (75), Expect = 0.20
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 4 SLKRAQLRSLLPRPPAVSHTQPWYRAAHPTTSPTAASRDVHPASGAVPG-----PWLVEG 58
+++ + +LPR A+ H+ SP +AS +HPA P P L G
Sbjct: 121 AVRPTAFKPVLPRSGAILHS-----------SPESASHQLHPAPPDKPKEQELKPGLCSG 169
Query: 59 TAVREGPQLQDAVPQRPTRPSKALWPAQMSAAPAIRLGQMVPGDTRGL 106
G ++P T S L P P R G T+G+
Sbjct: 170 ALSDSGRNSMSSLPTHSTSSSYQLDPLVTPVGPTSRFGGSAHNITQGI 217
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 33.5 bits (75), Expect = 0.20
Identities = 38/128 (29%), Positives = 49/128 (38%), Gaps = 27/128 (21%)
Query: 119 RGGQGGRWTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTGQ 178
RG +GGR R G G +RP ++ A+ G G GDG G+ G+
Sbjct: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVARG-----------GGGGGGGDGGGRRGR 53
Query: 179 EKGRA-EGRQARKSACKCPR-KGPNPGPWTRAAAWWGRLEGAKASAKGEQVRDP---GGH 233
+GR G + + PR PG W GA ASA E D G
Sbjct: 54 GRGRGFRGARGGRGGGGAPRGSRREPGGW-----------GAGASAPVEDDSDAETYGEE 102
Query: 234 LWEQGHVS 241
EQG+ S
Sbjct: 103 NDEQGNYS 110
>gi|4503657 forkhead box H1 [Homo sapiens]
Length = 365
Score = 33.1 bits (74), Expect = 0.26
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 30 AHPTTSPTAASRDVHPASGAVPGPWLVEGTAVREGPQLQDAVPQRPTRPSKALWPAQMSA 89
A PT ++ R + P +PGP VEG V+ G A+ P WP +
Sbjct: 203 AVPTPPLPSSERPLWPLC-PLPGPTRVEGETVQGG-----AIGPSTLSPEPRAWPLHLLQ 256
Query: 90 APAIRLGQMVPGDTRGLWG 108
A+ G+ G LWG
Sbjct: 257 GTAVPGGRSSGGHRASLWG 275
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.26
Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 29/193 (15%)
Query: 29 AAHPTTSPTAASRDVHPASGAVPGP-------WLVEGTAVREGPQLQ-DAVPQRPTRPSK 80
AA PT+SP++ SR + P+ P W +EG L P+ T P
Sbjct: 53 AALPTSSPSSQSRRL-PSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPE--TLPDP 109
Query: 81 ALWPAQMSAAPAIRL--GQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEGP-REGT 137
A + AAP I L G + GD +GP+G + GG G +A GP R+
Sbjct: 110 APLTDSLLAAPYIFLSAGAVQKGD----FGPKGIGMK---GGGPGLPPRGKASGPARDSA 162
Query: 138 FAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTG-QEKGRAEGRQARKSACKCP 196
+RP + G + +R P G G AA G TG + G R+ + P
Sbjct: 163 QQRRRPTRRPRGTRGGAR---RPGVRGQGAAA---VGPTGPRPTGAPPSRRTPPPGPRRP 216
Query: 197 RKGPNPGP-WTRA 208
+ P+ G WT A
Sbjct: 217 LRSPHSGSGWTPA 229
>gi|239749872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 33.1 bits (74), Expect = 0.26
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 126 WTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGL---GDAAGDGRGQTGQEKGR 182
W G R AEQ +++E R A GP LGL G G GRG+ GR
Sbjct: 34 WRATTRGDRRAGRAEQLAGHPRRLSEKERRGA-GPGSLGLAGAGQPRGPGRGRL--RPGR 90
Query: 183 AEGRQARKSACKCPRKGPNPGPWTRA 208
G + A + R+G PG W A
Sbjct: 91 --GLRVFDGAPRATRRGAAPGSWLHA 114
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.26
Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 29/193 (15%)
Query: 29 AAHPTTSPTAASRDVHPASGAVPGP-------WLVEGTAVREGPQLQ-DAVPQRPTRPSK 80
AA PT+SP++ SR + P+ P W +EG L P+ T P
Sbjct: 53 AALPTSSPSSQSRRL-PSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPE--TLPDP 109
Query: 81 ALWPAQMSAAPAIRL--GQMVPGDTRGLWGPQGTLLTWTYRGGQGGRWTRRAEGP-REGT 137
A + AAP I L G + GD +GP+G + GG G +A GP R+
Sbjct: 110 APLTDSLLAAPYIFLSAGAVQKGD----FGPKGIGMK---GGGPGLPPRGKASGPARDSA 162
Query: 138 FAEQRPHFQSSGAQQESRLAMGPPPLGLGDAAGDGRGQTG-QEKGRAEGRQARKSACKCP 196
+RP + G + +R P G G AA G TG + G R+ + P
Sbjct: 163 QQRRRPTRRPRGTRGGAR---RPGVRGQGAAA---VGPTGPRPTGAPPSRRTPPPGPRRP 216
Query: 197 RKGPNPGP-WTRA 208
+ P+ G WT A
Sbjct: 217 LRSPHSGSGWTPA 229
>gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo
sapiens]
Length = 125
Score = 33.1 bits (74), Expect = 0.26
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 126 WTRRAEGPREGTFAEQRPHFQSSGAQQESRLAMGPPPLGL---GDAAGDGRGQTGQEKGR 182
W G R AEQ +++E R A GP LGL G G GRG+ GR
Sbjct: 34 WRATTRGDRRAGRAEQLAGHPRRLSEKERRGA-GPGSLGLAGAGQPRGPGRGRL--RPGR 90
Query: 183 AEGRQARKSACKCPRKGPNPGPWTRA 208
G + A + R+G PG W A
Sbjct: 91 --GLRVFDGAPRATRRGAAPGSWLHA 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,987,942
Number of Sequences: 37866
Number of extensions: 820527
Number of successful extensions: 2939
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 225
Number of HSP's that attempted gapping in prelim test: 2777
Number of HSP's gapped (non-prelim): 386
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.