Guide to the Human Genome
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Name: C17orf55 Sequence: fasta or formatted (264aa) NCBI GI: 30425462
Description:

hypothetical protein LOC284185

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         31           3
 C cysteine            1.5          4           1
 D aspartate           2.3          6           1
 E glutamate           4.2         11           1
 F phenylalanine       1.1          3           1
 G glycine            13.3         35           2
 H histidine           3.0          8           1
 I isoleucine          0.4          1           1
 K lysine              3.4          9           1
 L leucine             6.1         16           2
 M methionine          1.5          4           1
 N asparagine          0.8          2           1
 P proline            11.4         30           3
 Q glutamine           7.2         19           2
 R arginine           10.2         27           2
 S serine              6.8         18           2
 T threonine           6.1         16           2
 V valine              4.2         11           1
 W tryptophan          4.2         11           2
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284185 
LOC100131455          0.035   PREDICTED: hypothetical protein 
LOC100131455          0.035   PREDICTED: hypothetical protein 
COL11A1               0.033   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.033   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.033   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100131455          0.030   PREDICTED: hypothetical protein 
COL5A1                0.022   alpha 1 type V collagen preproprotein 
LOC100128127          0.022   PREDICTED: hypothetical protein 
LOC100128127          0.022   PREDICTED: hypothetical protein 
LOC100128127          0.022   PREDICTED: hypothetical protein 
LOC100290783          0.022   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.022   PREDICTED: hypothetical protein XP_002343435 
BSN                   0.018   bassoon protein 
ANKRD11               0.018   ankyrin repeat domain 11 
WDR33                 0.018   WD repeat domain 33 isoform 1 
COL11A2               0.018   collagen, type XI, alpha 2 isoform 3 preproprotein ...
ROBO3                 0.018   roundabout, axon guidance receptor, homolog 3 
LOC284988             0.017   PREDICTED: hypothetical protein 
LOC100133167          0.017   PREDICTED: hypothetical protein 
ZNF828                0.017   zinc finger protein 828 
SYN1                  0.017   synapsin I isoform Ib 
SYN1                  0.017   synapsin I isoform Ia 
LZTS1                 0.015   leucine zipper, putative tumor suppressor 1 
AVEN                  0.015   cell death regulator aven 
FOXH1                 0.015   forkhead box H1 
LOC729570             0.015   PREDICTED: hypothetical protein 
LOC100289239          0.015   PREDICTED: hypothetical protein 
LOC729570             0.015   PREDICTED: hypothetical protein 
LOC100289239          0.015   PREDICTED: hypothetical protein XP_002343068 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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