Search of human proteins with 29150261

Search of human proteins with 29150261

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29150261 interferon, gamma-inducible protein 30
preproprotein [Homo sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29150261 interferon, gamma-inducible protein 30 preproprotein...   518   e-147
gi|9624969 butyrophilin-like 2 [Homo sapiens]                          30   1.5  
gi|55743118 RAB3 GTPase-activating protein [Homo sapiens]              30   2.6  
gi|68799814 adaptor-related protein complex 2, mu 1 subunit isof...    30   2.6  
gi|125490356 zinc finger protein 517 [Homo sapiens]                    30   2.6  
gi|14917109 adaptor-related protein complex 2, mu 1 subunit isof...    29   3.4  
gi|221139761 zinc finger protein 853 [Homo sapiens]                    29   4.4  
gi|39979638 family with sequence similarity 5, member C [Homo sa...    29   4.4  
gi|51988914 fibroblast growth factor receptor-like 1 precursor [...    28   5.8  
gi|51988910 fibroblast growth factor receptor-like 1 precursor [...    28   5.8  
gi|51988912 fibroblast growth factor receptor-like 1 precursor [...    28   5.8  
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]                28   9.8  
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo...    28   9.8  

>gi|29150261 interferon, gamma-inducible protein 30 preproprotein
           [Homo sapiens]
          Length = 250

 Score =  518 bits (1333), Expect = e-147
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP 60
           MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP
Sbjct: 1   MTLSPLLLFLPPLLLLLDVPTAAVQASPLQALDFFGNGPPVNYKTGNLYLRGPLKKSNAP 60

Query: 61  LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 120
           LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG
Sbjct: 61  LVNVTLYYEALCGGCRAFLIRELFPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQHG 120

Query: 121 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM 180
           EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM
Sbjct: 121 EEECKFNKVEACVLDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAM 180

Query: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS 240
           GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS
Sbjct: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVCPSS 240

Query: 241 TSSLRSVCFK 250
           TSSLRSVCFK
Sbjct: 241 TSSLRSVCFK 250


>gi|9624969 butyrophilin-like 2 [Homo sapiens]
          Length = 455

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 48/162 (29%)

Query: 94  LNVTLVPYGNAQEQNVSGRWEFKCQH-------------GEEECKFNKVEACVLDELDME 140
           L   L P  NAQ   V  RW+   ++             GE+  ++      V D +D  
Sbjct: 265 LTCYLSPKANAQSMEV--RWDRSHRYPAVHVYMDGDHVAGEQMAEYRGRTVLVSDAIDEG 322

Query: 141 LAFLTIV-----------CMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMH 189
              L I+           C+ E +D+ +   L L++ + G SP              L+ 
Sbjct: 323 RLTLQILSARPSDDGQYRCLFEKDDVYQEASLDLKVVSLGSSP--------------LIT 368

Query: 190 ANAQRTDALQP--------PHEYVPWVTVNGKPLEDQTQLLT 223
              Q    +QP        P  +VPW  + GK +   +Q LT
Sbjct: 369 VEGQEDGEMQPMCSSDGWFPQPHVPWRDMEGKTIPSSSQALT 410


>gi|55743118 RAB3 GTPase-activating protein [Homo sapiens]
          Length = 981

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 125 KFNKVEACVLDELDMELAFLTIVCM--EEFEDMERSLPLCLQLYAPGLSPDTIMECAMGD 182
           +   VEA +     ++  F T  C   EE ED+ER +   L+       P+ ++  A   
Sbjct: 835 QITNVEALIARARSLKAKFGTEKCEQEEEKEDLERFVSCLLE------QPEVLVTGAGRG 888

Query: 183 RGMQLMH---ANAQRTDALQPPHE 203
              +++H    NAQR  A+ PP E
Sbjct: 889 HAGRIIHKLFVNAQRAAAMTPPEE 912


>gi|68799814 adaptor-related protein complex 2, mu 1 subunit isoform
           b [Homo sapiens]
          Length = 433

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 30  QALDFFGNGPPVNYKTGNLYL----RGPLKKSNAPLVNVTLYYEALCGGCRAFLIRELFP 85
           + LDF   G P N +TG L      +G   ++      +T       G  R  +      
Sbjct: 114 EILDF---GYPQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKYRRNE 170

Query: 86  TWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQ-HGEEECKFNKVEACVLDE 136
            +L V+E +N+ + P G     +VSGR   K    G  ECKF   +  V+++
Sbjct: 171 LFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK 222


>gi|125490356 zinc finger protein 517 [Homo sapiens]
          Length = 492

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 181 GDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQGKKPDVC 237
           G  G   +   AQR  A  PPHE      V G+P      LL L  +L+ G+KP  C
Sbjct: 347 GGVGQGALLGAAQRPQAGDPPHE----CPVCGRPFR-HNSLLLLHLRLHTGEKPFEC 398


>gi|14917109 adaptor-related protein complex 2, mu 1 subunit isoform
           a [Homo sapiens]
          Length = 435

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 87  WLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQ-HGEEECKFNKVEACVLDE 136
           +L V+E +N+ + P G     +VSGR   K    G  ECKF   +  V+++
Sbjct: 174 FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEK 224


>gi|221139761 zinc finger protein 853 [Homo sapiens]
          Length = 659

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 150 EEFEDMER-SLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYV--- 205
           EE E  ER S P    + AP  + +   E   G R +QL     Q     QP HE +   
Sbjct: 53  EEEEPQERNSSPQRPAVSAPVGASEIAEETRPGQRELQLQQLEQQPEPQQQPQHEQLQQP 112

Query: 206 -PWVTVNGKPLEDQTQLLTLVCQLYQGKKPDV 236
            P + +  +P +D  Q L+   QL Q K   V
Sbjct: 113 QPHLELQQQPQQDGQQQLS---QLQQEKHQSV 141


>gi|39979638 family with sequence similarity 5, member C [Homo
           sapiens]
          Length = 766

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 28  PLQALDF---FGNGPPVNYKTGNLYLRGPLKKSNAPLVNVTLYYEAL 71
           PLQ  ++    GN     ++T ++YLR  +K SN P  N ++YYE L
Sbjct: 604 PLQCYNWTLTLGNKWKTFFETVHIYLRSRIK-SNGPNGNESIYYEPL 649


>gi|51988914 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1  MTLSPLL-LFLPPLLLLLDVPTAAVQASPLQA 31
          MT SPLL L LPPLLL    P AA +  P  A
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKMA 32


>gi|51988910 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1  MTLSPLL-LFLPPLLLLLDVPTAAVQASPLQA 31
          MT SPLL L LPPLLL    P AA +  P  A
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKMA 32


>gi|51988912 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 1  MTLSPLL-LFLPPLLLLLDVPTAAVQASPLQA 31
          MT SPLL L LPPLLL    P AA +  P  A
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKMA 32


>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
          Length = 165

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 193 QRTDALQPPHEYVPWVTVNGKPLEDQTQL 221
           Q+   L+   + + W+T  GKPLEDQ  L
Sbjct: 109 QQVSGLEGVQDDLFWLTFEGKPLEDQLPL 137


>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
           sapiens]
          Length = 623

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 169 GLSPDTIMECAMGDRGMQLMHANAQRTDALQP 200
           G+ PD + E   G R +QL  A  + TDA+ P
Sbjct: 198 GVRPDNVAEVVAGARRLQLPGAAQRATDAVGP 229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,759,147
Number of Sequences: 37866
Number of extensions: 498432
Number of successful extensions: 978
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 13
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.