Guide to the Human Genome
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Name: GRIK5 Sequence: fasta or formatted (980aa) NCBI GI: 29029597
Description:

glutamate receptor KA2 precursor

Referenced in:

Glutamate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         79           2
 C cysteine            2.0         20           1
 D aspartate           3.3         32           2
 E glutamate           6.8         67           2
 F phenylalanine       3.8         37           2
 G glycine             6.8         67           2
 H histidine           1.8         18           1
 I isoleucine          5.6         55           3
 K lysine              2.9         28           1
 L leucine            11.2        110           5
 M methionine          3.1         30           1
 N asparagine          3.8         37           2
 P proline             5.7         56           2
 Q glutamine           3.1         30           2
 R arginine            8.1         79           5
 S serine              8.4         82           3
 T threonine           5.1         50           2
 V valine              6.1         60           3
 W tryptophan          1.3         13           2
 Y tyrosine            3.1         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate receptor KA2 precursor 
GRIK4                 0.666   glutamate receptor KA1 precursor 
GRIK2                 0.362   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK3                 0.354   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK2                 0.354   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIK1                 0.352   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK1                 0.345   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIA3                 0.260   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA3                 0.260   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIA1                 0.257   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRIA1                 0.257   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIA2                 0.250   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRIA2                 0.249   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA2                 0.249   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA4                 0.246   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA4                 0.245   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRID2                 0.143   glutamate receptor, ionotropic, delta 2 
GRID1                 0.141   glutamate receptor, ionotropic, delta 1 precursor [H...
GRIN1                 0.117   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.112   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.112   NMDA receptor 1 isoform NR1-2 precursor 
GRIN2D                0.083   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN2A                0.080   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.080   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.080   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN2C                0.076   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIN2B                0.073   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN3A                0.063   glutamate receptor, ionotropic, N-methyl-D-aspartat...
GRIN3B                0.062   glutamate receptor, ionotropic, N-methyl-D-aspartate...
GRIA4                 0.032   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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