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Search of human proteins with 28872722
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872722 B-cell translocation gene 3 isoform b [Homo
sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens] 541 e-154
gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens] 520 e-148
gi|8923958 B-cell translocation gene 4 [Homo sapiens] 189 3e-48
gi|4502473 B-cell translocation protein 1 [Homo sapiens] 91 1e-18
gi|5802988 B-cell translocation gene 2 [Homo sapiens] 88 6e-18
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 87 1e-17
gi|7706739 transducer of ERBB2, 2 [Homo sapiens] 83 3e-16
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 42 7e-04
gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo s... 35 0.062
gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo s... 35 0.062
gi|118402590 myosin XV [Homo sapiens] 35 0.081
gi|46370073 GRB2-associated binding protein 1 isoform b [Homo sa... 35 0.081
gi|46370071 GRB2-associated binding protein 1 isoform a [Homo sa... 35 0.081
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.081
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 34 0.11
gi|150417989 cyclin K isoform 1 [Homo sapiens] 33 0.18
gi|134254450 patched isoform S [Homo sapiens] 33 0.24
gi|134254435 patched isoform S [Homo sapiens] 33 0.24
gi|134254468 patched isoform S [Homo sapiens] 33 0.24
gi|134254452 patched isoform S [Homo sapiens] 33 0.24
gi|134254432 patched isoform L' [Homo sapiens] 33 0.24
gi|134254466 patched isoform M [Homo sapiens] 33 0.24
gi|134254446 patched isoform L [Homo sapiens] 33 0.24
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 32 0.53
gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] 32 0.53
gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens] 32 0.53
gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens] 32 0.53
gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens] 32 0.53
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.53
gi|170932516 paxillin isoform 2 [Homo sapiens] 32 0.69
>gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]
Length = 252
Score = 541 bits (1393), Expect = e-154
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI
Sbjct: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENK 120
RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENK
Sbjct: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENK 120
Query: 121 DENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFP 180
DENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFP
Sbjct: 121 DENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFP 180
Query: 181 PLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDR 240
PLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDR
Sbjct: 181 PLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDR 240
Query: 241 NHWINPHMLAPH 252
NHWINPHMLAPH
Sbjct: 241 NHWINPHMLAPH 252
>gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]
Length = 296
Score = 520 bits (1338), Expect = e-148
Identities = 252/296 (85%), Positives = 252/296 (85%), Gaps = 44/296 (14%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI
Sbjct: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCR---------------- 104
RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCR
Sbjct: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPD 120
Query: 105 ----------------------------YGEKNNAFIVASFENKDENKDEISRKVTRALD 136
YGEKNNAFIVASFENKDENKDEISRKVTRALD
Sbjct: 121 LVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALD 180
Query: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 196
KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY
Sbjct: 181 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 240
Query: 197 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 252
RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH
Sbjct: 241 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRNHWINPHMLAPH 296
>gi|8923958 B-cell translocation gene 4 [Homo sapiens]
Length = 223
Score = 189 bits (479), Expect = 3e-48
Identities = 96/192 (50%), Positives = 132/192 (68%), Gaps = 4/192 (2%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M++EIA VFF TRLV+KHDKL K+ +E FAEKL IL E Y++HW+ + PSKGQA+RCI
Sbjct: 1 MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDCPSKGQAFRCI 60
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRYGEKNNAFIVASFENK 120
R+N Q DP + +AC S + +S LGLPKE+T+WVDP EVCCRYGEKN+ F VASF+ +
Sbjct: 61 RINNNQNKDPILERACVESNVDFSHLGLPKEMTIWVDPFEVCCRYGEKNHPFTVASFKGR 120
Query: 121 DENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFP 180
E + E+ ++++ A+ + +SD SG+S +E SKE V P + +YQ+ E +
Sbjct: 121 WE-EWELYQQISYAVSRASSDVSSGTSCDEESCSKEPRVIPK--VSNPKSIYQV-ENLKQ 176
Query: 181 PLPMWHPLPRKK 192
P W +PRKK
Sbjct: 177 PFQSWLQIPRKK 188
>gi|4502473 B-cell translocation protein 1 [Homo sapiens]
Length = 171
Score = 90.5 bits (223), Expect = 1e-18
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M EIAA V F ++ +R + ++ F++ L +L E YK+HW+PEKP KG YRCI
Sbjct: 11 MIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCI 70
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEKNNAFIV 114
R+N ++DP + +A + + +L LP ELTLWVDP EV R GE + ++
Sbjct: 71 RIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVL 124
>gi|5802988 B-cell translocation gene 2 [Homo sapiens]
Length = 158
Score = 88.2 bits (217), Expect = 6e-18
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 1 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60
M EIAA V F + L+R + ++ ++ F+ L L E YK+HW+PEKPSKG YRCI
Sbjct: 9 MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCI 68
Query: 61 RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEKNNAFIV 114
R+N ++DP + + + L LP ELTLWVDP EV R GE + ++
Sbjct: 69 RIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVL 122
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 87.0 bits (214), Expect = 1e-17
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Query: 19 HDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACEN 78
++KL + V F E+L +L++KY+ HWYPEKP KG +RCI + ++VDP + +A +
Sbjct: 17 YNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIG--EKVDPVIEQASKE 74
Query: 79 SCILYSDL--GLPKELTLWVDPCEVCCRYGEKNNAFIVASFENKDENKDEISRKVTRALD 136
S + D+ LP++L++W+DP EV + GEK ++ +N +EN E+ +++ + +
Sbjct: 75 SGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDN-NENGCELDKEIKNSFN 133
Query: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVY 172
+ S + +S P +AA SP +
Sbjct: 134 PEAQVFMPISDPASSVSSSPS--PPFGHSAAVSPTF 167
>gi|7706739 transducer of ERBB2, 2 [Homo sapiens]
Length = 344
Score = 82.8 bits (203), Expect = 3e-16
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 19 HDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACEN 78
++KL + + F E+L +L++KY+ HWYPEKP KG +RC+ + + VDP V A +
Sbjct: 17 YNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHIG--EMVDPVVELAAKR 74
Query: 79 SCILYSDL--GLPKELTLWVDPCEVCCRYGEKNNAFIVASFENKDENKDEISRKVTRALD 136
S + D+ +P+EL++W+DP EV + GEK ++ +++ E+ +++ + +
Sbjct: 75 SGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLYLDDSEGCGAPELDKEIKSSFN 134
Query: 137 K-----VTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPV 171
V S S+ S P+ + +A P+
Sbjct: 135 PDAQVFVPIGSQDSSLSNSPSPSFGQSPSPTFIPRSAQPI 174
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 41.6 bits (96), Expect = 7e-04
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 144 SGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPM--WHPLPRKK--PGMYRGN 199
+G S S TSK++ SS+ + S V + + PPLP+ WH + K +G+
Sbjct: 258 TGISYSIPSTSKQIVSPSSSMAQSKSQVQAMLPVALPPLPVPQWHHAHQLKALAASKQGS 317
Query: 200 GHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPP 233
+ P P G P G + PYRP+P PP
Sbjct: 318 ATKQQGPTPSWSGLPPPG-LSPPYRPVPSPHPPP 350
>gi|154354974 phosphatase and actin regulator 2 isoform 3 [Homo
sapiens]
Length = 634
Score = 35.0 bits (79), Expect = 0.062
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 113 IVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSS-----DEETSKEMEVKPSSVTAA 167
+ +FEN + + I + TR + V S+ +GS S +E+ + E +
Sbjct: 91 VTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKENTENHSETP 150
Query: 168 ASPVYQISELIFPPLPMWHPLPRKKP----GMYRGNGHQNHYPPPVPFGYPNQGRKNKPY 223
A+P S PP P P P+K P G G H+ PP+ K
Sbjct: 151 AAPALPPSA---PPKPRPKPKPKKSPVPPKGATAGASHKGDEVPPI---------KKNTK 198
Query: 224 RPIPVTWVPPP 234
P VPPP
Sbjct: 199 APGKQAPVPPP 209
>gi|154354968 phosphatase and actin regulator 2 isoform 1 [Homo
sapiens]
Length = 645
Score = 35.0 bits (79), Expect = 0.062
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 21/131 (16%)
Query: 113 IVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSS-----DEETSKEMEVKPSSVTAA 167
+ +FEN + + I + TR + V S+ +GS S +E+ + E +
Sbjct: 102 VTVNFENSNGHMIPIGEESTREENVVKSEEGNGSVSEKTPPLEEQAEDKKENTENHSETP 161
Query: 168 ASPVYQISELIFPPLPMWHPLPRKKP----GMYRGNGHQNHYPPPVPFGYPNQGRKNKPY 223
A+P S PP P P P+K P G G H+ PP+ K
Sbjct: 162 AAPALPPSA---PPKPRPKPKPKKSPVPPKGATAGASHKGDEVPPI---------KKNTK 209
Query: 224 RPIPVTWVPPP 234
P VPPP
Sbjct: 210 APGKQAPVPPP 220
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 34.7 bits (78), Expect = 0.081
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 179 FPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPP 234
F P + + +P + G+Y G G + YPP VP+ YP + Y WVPPP
Sbjct: 369 FDPYGVHYTVPYAE-GVY-GGGDEAIYPPEVPYFYPEESASAFVY-----PWVPPP 417
>gi|46370073 GRB2-associated binding protein 1 isoform b [Homo
sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.081
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 196
KV + GS SS+E + + P+S P Q S P+ + +P PG +
Sbjct: 428 KVKNVLTVGSVSSEELDENYVPMNPNS------PPRQHSSSFTEPIQEANYVPMT-PGTF 480
Query: 197 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRN 241
+ PPP G+ K P RP+PV PP + DRN
Sbjct: 481 DFSSFGMQVPPPAHMGF-RSSPKTPPRRPVPVADCEPPPV--DRN 522
>gi|46370071 GRB2-associated binding protein 1 isoform a [Homo
sapiens]
Length = 724
Score = 34.7 bits (78), Expect = 0.081
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMY 196
KV + GS SS+E + + P+S P Q S P+ + +P PG +
Sbjct: 428 KVKNVLTVGSVSSEELDENYVPMNPNS------PPRQHSSSFTEPIQEANYVPMT-PGTF 480
Query: 197 RGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPPPGMHCDRN 241
+ PPP G+ K P RP+PV PP + DRN
Sbjct: 481 DFSSFGMQVPPPAHMGF-RSSPKTPPRRPVPVADCEPPPV--DRN 522
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.7 bits (78), Expect = 0.081
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 118 ENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSK--EMEVKPSSVTAAASPVYQIS 175
EN + E S + + +S S SSSS E +S+ E E +P+++ +A+ P ++
Sbjct: 1026 ENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPREVP 1085
Query: 176 ELIFPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRP---------- 225
+ P P+ P+P + G + P P G + + P RP
Sbjct: 1086 --VPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPLRPPEPPAGPPAP 1143
Query: 226 ---------IPVTWVPPP 234
P+ +PPP
Sbjct: 1144 APRPDERPSSPIPLLPPP 1161
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 34.3 bits (77), Expect = 0.11
Identities = 18/69 (26%), Positives = 32/69 (46%)
Query: 117 FENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISE 176
+ N E +EIS + ++ +D++T SD+E+S +EV + + E
Sbjct: 3471 YRNSIEFFEEISDEASKLVDRLTQSEREQEIVSDDESSSALEVSVIENLPPVETEHSVPE 3530
Query: 177 LIFPPLPMW 185
IF P+W
Sbjct: 3531 DIFDTRPIW 3539
Score = 28.5 bits (62), Expect = 5.8
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 140 SDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGN 199
++ HS +SSS + T K V PS+ T SPV PP+ ++ P G
Sbjct: 1863 TERHSPASSSSK-TEKHSPVSPSTKTERHSPVSSTKTERHPPVSPSGKTDKRPPVSPSGR 1921
Query: 200 GHQNHYPPPVPFGYPNQGRKNKPYRP 225
++ PPV P + K P P
Sbjct: 1922 TEKH---PPVS---PGRTEKRLPVSP 1941
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 144 SGSSSSDEETSKEMEVKPSSVTAAASP----VYQISELIFPPLPMWHPLPRKKPGMYRGN 199
S SS + + + V P AA P + +I E PPLP HP P +KP +
Sbjct: 324 SPQPSSPRQVKRAVVVSPKEENKAAEPPPPKIPKI-ETTHPPLPPAHPPPDRKPPLAAAL 382
Query: 200 GHQNHYPPPVPFGYPNQGRKNKPYRPIPVTWVPP 233
G + P PV + + P P PV PP
Sbjct: 383 G-EAEPPGPVDATDLPKVQIPPPAHPAPVHQPPP 415
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1064 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1122
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1123 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1167
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1214 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1272
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1273 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1317
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1149 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1207
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1208 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1252
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 33.1 bits (74), Expect = 0.24
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 29/108 (26%)
Query: 143 HSGSSSSDEETSKEMEVKPSS--------------------VTAAASPVYQISELIFPPL 182
HSGS SSD E S + V S V A +PV+ S ++ P
Sbjct: 1215 HSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHPE- 1273
Query: 183 PMWHP--LPRKKPGMYRGN---GHQNHYPPPVPFGYPNQGRKNKPYRP 225
HP PR++P + G+ G Q P P P +G PYRP
Sbjct: 1274 SRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDP---PREGLWPPPYRP 1318
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 32.0 bits (71), Expect = 0.53
Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 118 ENKDENKDEISRKVTRALDKVT----SDYHSGSSSSD-------EETSKEMEV------- 159
E KD + + + V + K T D SSS+ EE S+E V
Sbjct: 1224 EKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPES 1283
Query: 160 KPSSVTAAASPVYQISE--LIFPPLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQG 217
K ++ A+ Q+S+ L+ PP P PRK+ + + PPP P P Q
Sbjct: 1284 KQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPP-PESGPEQS 1342
Query: 218 RKNK--PYRPIPVTWVP-----PPGMHCDRN 241
++ K P IPV P PP ++ N
Sbjct: 1343 KQKKVAPRPSIPVKQKPKEKEKPPPVNKQEN 1373
>gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens]
Length = 239
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 148 SSDEETSKEME--VKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHY 205
++ E+ + EME KP A P Y L PP P P Y G +Y
Sbjct: 7 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPP-----PTGYPGGLPMGYY 61
Query: 206 PPPVPFGYP-------------NQGRKNKPYRPIPVTWVPPP 234
P P +P G+ P + +P+TW+P P
Sbjct: 62 SPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGP 103
>gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 148 SSDEETSKEME--VKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHY 205
++ E+ + EME KP A P Y L PP P P Y G +Y
Sbjct: 7 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPP-----PTGYPGGLPMGYY 61
Query: 206 PPPVPFGYP-------------NQGRKNKPYRPIPVTWVPPP 234
P P +P G+ P + +P+TW+P P
Sbjct: 62 SPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGP 103
>gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 148 SSDEETSKEME--VKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHY 205
++ E+ + EME KP A P Y L PP P P Y G +Y
Sbjct: 7 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPP-----PTGYPGGLPMGYY 61
Query: 206 PPPVPFGYP-------------NQGRKNKPYRPIPVTWVPPP 234
P P +P G+ P + +P+TW+P P
Sbjct: 62 SPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGP 103
>gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 148 SSDEETSKEME--VKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNGHQNHY 205
++ E+ + EME KP A P Y L PP P P Y G +Y
Sbjct: 7 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPP-----PTGYPGGLPMGYY 61
Query: 206 PPPVPFGYP-------------NQGRKNKPYRPIPVTWVPPP 234
P P +P G+ P + +P+TW+P P
Sbjct: 62 SPQQPSTFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGP 103
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.0 bits (71), Expect = 0.53
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 137 KVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQISELI-----FPPLPMWHPLPRK 191
+++ D + + + K M V P + AA V + + FPPLP P P
Sbjct: 640 EISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPPP 699
Query: 192 KPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPIPV-TWVPPP 234
+PG PPP P P P P+P VPPP
Sbjct: 700 QPGF----PMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPPP 739
Score = 28.1 bits (61), Expect = 7.6
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 168 ASPVYQISELIFP-PLPMWHPLPRKKPGMYRGNGHQNHYPPPVPFGYPNQGRKNKPYRPI 226
ASPV + L P PLP+ PLP P + R Q P P+P P P
Sbjct: 1420 ASPVLLETGLPLPLPLPL--PLPLALPAVLRA---QARAPTPLP-----------PLLPA 1463
Query: 227 PVTWVPPP 234
P+ PPP
Sbjct: 1464 PLASCPPP 1471
>gi|170932516 paxillin isoform 2 [Homo sapiens]
Length = 557
Score = 31.6 bits (70), Expect = 0.69
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 25/144 (17%)
Query: 102 CCRYGEKNNAFIVASFENKDENKDEISRKVTRAL-------DKVTSDYHSGSSSSDEETS 154
C R GE+ + + SF NK ++ + ++ +L D++ + ++ + +
Sbjct: 108 CSRVGEEEHVY---SFPNKQKSAEPSPTVMSTSLGSNLSELDRLLLELNAVQHNPPGFPA 164
Query: 155 KEMEVKPSSVTAAASPVYQISELIFPPLPMWHPLPRKKPGMYRGNG-------------- 200
E P + A SP+Y + E P PL ++KP G G
Sbjct: 165 DEANSSPP-LPGALSPLYGVPETNSPLGGKAGPLTKEKPKRNGGRGLEDVRPSVESLLDE 223
Query: 201 HQNHYPPPVPFGYPNQGRKNKPYR 224
++ P PVP NQG + P R
Sbjct: 224 LESSVPSPVPAITVNQGEMSSPQR 247
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,137,792
Number of Sequences: 37866
Number of extensions: 697343
Number of successful extensions: 2667
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 2582
Number of HSP's gapped (non-prelim): 183
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.