Guide to the Human Genome
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Name: RCN3 Sequence: fasta or formatted (328aa) NCBI GI: 28626510
Description:

reticulocalbin 3, EF-hand calcium binding domain

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         30           2
 C cysteine            0.0          0           0
 D aspartate          11.0         36           2
 E glutamate           9.8         32           3
 F phenylalanine       3.0         10           1
 G glycine             7.6         25           1
 H histidine           5.5         18           2
 I isoleucine          2.1          7           1
 K lysine              2.4          8           2
 L leucine             9.1         30           7
 M methionine          2.1          7           2
 N asparagine          2.4          8           1
 P proline             4.6         15           2
 Q glutamine           4.9         16           2
 R arginine            7.9         26           2
 S serine              4.0         13           1
 T threonine           4.0         13           1
 V valine              5.2         17           1
 W tryptophan          2.4          8           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulocalbin 3, EF-hand calcium binding domain [Ho... 
RCN1                  0.512   reticulocalbin 1 precursor 
CALU                  0.462   calumenin isoform b precursor 
CALU                  0.453   calumenin isoform a precursor 
RCN2                  0.224   reticulocalbin 2 precursor 
SDF4                  0.113   stromal cell derived factor 4 isoform 2 precursor [H...
SDF4                  0.088   stromal cell derived factor 4 isoform 1 precursor [Ho...
CALML5                0.036   calmodulin-like 5 
CABP2                 0.027   calcium binding protein 2 isoform 2 
CABP2                 0.027   calcium binding protein 2 isoform 1 
CALML3                0.026   calmodulin-like 3 
CALB2                 0.023   calbindin 2 isoform 1 
SCGN                  0.023   secretagogin precursor 
TNNC2                 0.023   fast skeletal muscle troponin C 
CALM3                 0.021   calmodulin 3 
CALM2                 0.021   calmodulin 2 
CALM1                 0.021   calmodulin 1 
RHOT2                 0.020   ras homolog gene family, member T2 
PPP3R2                0.020   protein phosphatase 3 regulatory subunit B, beta iso...
CABP4                 0.018   calcium binding protein 4 
CAPSL                 0.018   calcyphosine-like 
CAPSL                 0.018   calcyphosine-like 
CALML6                0.018   calmodulin-like 6 
DST                   0.017   dystonin isoform 4 
DST                   0.017   dystonin isoform 3 
DST                   0.017   dystonin isoform 2 
DST                   0.017   dystonin isoform 1 
DST                   0.017   dystonin isoform 1eA precursor 
SLC25A23              0.017   solute carrier family 25, member 23 
CAPS                  0.015   calcyphosine isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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