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Search of human proteins with 27881482
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Homo sapiens]
(925 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... 1872 0.0
gi|27886568 interferon induced with helicase C domain 1 [Homo sa... 379 e-105
gi|149408122 RNA helicase LGP2 [Homo sapiens] 309 7e-84
gi|29294649 dicer1 [Homo sapiens] 113 7e-25
gi|29294651 dicer1 [Homo sapiens] 113 7e-25
gi|74959747 Fanconi anemia, complementation group M [Homo sapiens] 99 2e-20
gi|76880486 activating signal cointegrator 1 complex subunit 3 i... 46 1e-04
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 44 0.001
gi|139394648 DNA polymerase theta [Homo sapiens] 43 0.001
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 43 0.002
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 40 0.010
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 40 0.010
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 40 0.013
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 39 0.017
gi|40217847 activating signal cointegrator 1 complex subunit 3-l... 39 0.017
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 39 0.022
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 38 0.038
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 38 0.050
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 37 0.065
gi|130484567 HFM1 protein [Homo sapiens] 37 0.085
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 37 0.11
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 37 0.11
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 37 0.11
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 37 0.11
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 37 0.11
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 37 0.11
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 37 0.11
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 36 0.14
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 36 0.19
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 36 0.19
>gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I
[Homo sapiens]
Length = 925
Score = 1872 bits (4849), Expect = 0.0
Identities = 925/925 (100%), Positives = 925/925 (100%)
Query: 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF
Sbjct: 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
Query: 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP
Sbjct: 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
Query: 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN
Sbjct: 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
Query: 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP
Sbjct: 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
Query: 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI
Sbjct: 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
Query: 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI
Sbjct: 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
Query: 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT
Sbjct: 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
Query: 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR
Sbjct: 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
Query: 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL
Sbjct: 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
Query: 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV
Sbjct: 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
Query: 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI
Sbjct: 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
Query: 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN
Sbjct: 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
Query: 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI
Sbjct: 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
Query: 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE
Sbjct: 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
Query: 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
Sbjct: 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
Query: 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
VQTLYSKWKDFHFEKIPFDPAEMSK
Sbjct: 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
>gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
Length = 1025
Score = 379 bits (972), Expect = e-105
Identities = 313/1022 (30%), Positives = 484/1022 (47%), Gaps = 149/1022 (14%)
Query: 6 RRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLE-L 64
R + F+ ++ + +L Y+ + E + IQ G M+A L L L + +
Sbjct: 12 RYLISCFRARVKMYIQVEPVLDYLT-FLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGV 70
Query: 65 QEEGWFRGFLDALDHAG--YSGLYEAIESWDFKKIE---KLEEYRLLLKRLQPEFKTRII 119
GW R F++AL G + Y E D +EY LL LQP +++
Sbjct: 71 WHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLL 130
Query: 120 PTDIISD-LSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
D++ + E L+ E + G +G +L++ +++ KENW L +
Sbjct: 131 VRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQ--KENWFSAFLNVLRQT 188
Query: 179 RNK----------FSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ--NLSENS 226
N SE + + V+ +E+++ ++ +Q +++ N SE+S
Sbjct: 189 GNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESS 248
Query: 227 CPPSEV---SDTNLY-------------------------------------SP---FKP 243
S V SDT+L SP +
Sbjct: 249 FADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARASPEPELQL 308
Query: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPV 302
R YQ+E+A PA++GKN IIC PTG GKT V++ I + HL KK + GKV+ N++ +
Sbjct: 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 368
Query: 303 YEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN---NLK 356
EQ +F K F+ + YRV G+SG T + ++V++ DIII T QIL N NL+
Sbjct: 369 VEQ---LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425
Query: 357 KGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVI 406
G LS F+L+I DECH+T+K+ YN IM +YL QKL + PLPQ++
Sbjct: 426 NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 485
Query: 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
GLTAS GVG A +A ++I KLCA+LDA I TVK NL++L+ + +P K F ++
Sbjct: 486 GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 545
Query: 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
D FK + ++M ++ + + +S +FGTQ YEQW + ++K
Sbjct: 546 REDPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK 591
Query: 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD- 585
+ + + R+C HLRKYN+AL I++ RM DA +L+ F++ + F IE D
Sbjct: 592 EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDS 645
Query: 586 ------------------------------LTQRFEEKLQELESVSRDPSNENPKLEDLC 615
L F E + L+ ++ +P EN KL L
Sbjct: 646 DEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLR 705
Query: 616 FILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTG 672
+ E+Y E+ I+F KTR AL WI N K + +K L G G +++
Sbjct: 706 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKP 765
Query: 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
MT QK ++ F+ +G N+LIAT+VA+EG+DI +CN+VI Y V N I M+Q RGR R
Sbjct: 766 MTQNEQKEVISKFR-TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRAR 824
Query: 733 ARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
A S L+ S +GVIE E +N ++EKMM +I +Q + KIL +Q +
Sbjct: 825 ADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEK 884
Query: 792 DSQEKPKPVPDKENK----KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH 847
+ K +N LC+ C LAC D+ VIE+ H+ + FKE ++ R +
Sbjct: 885 KMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVREN 944
Query: 848 PK-PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYS 906
K+ + ++ +I C C WG + +K ++P +KI +FVV + Y
Sbjct: 945 KALQKKCADYQINGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYK 1001
Query: 907 KW 908
KW
Sbjct: 1002 KW 1003
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 309 bits (792), Expect = 7e-84
Identities = 220/693 (31%), Positives = 360/693 (51%), Gaps = 50/693 (7%)
Query: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ E+ +PA++GKN II PTG GKT + + + HL+ KVV N++ +
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV 60
Query: 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL---VNNLKKGTI 360
Q F + + + VT +SG + +D++I T ++L + + ++
Sbjct: 61 TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119
Query: 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
L++F+L++ DECH+T K YN+IM YL+ KL + PLPQV+GLTAS G G A
Sbjct: 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGASKL 178
Query: 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
D A++++ +LCA+LD I + ++ +L++ +P K + R D F ++ +LM
Sbjct: 179 DGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMD 238
Query: 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
++ LS R+FGTQ YEQ +V + +A + + +E R+
Sbjct: 239 QIHDHL-----EMPELS----RKFGTQMYEQQVVKLSEAAALAGL----QEQRV------ 279
Query: 541 YTSHLRKYNDALIISEHARMKDALDYLKDFF--SNVRAAGFDEIEQDLTQRFEEKLQELE 598
Y HLR+YNDAL+I + R DAL L+DF+ +V E+ L F+++ EL
Sbjct: 280 YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELA 339
Query: 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF--L 656
++ ENPKLE L ILQ ++ + I+F +TR +L W++ L +
Sbjct: 340 HLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDI 398
Query: 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ +L G G ++Q+T MT Q+ ++ F+ G N+L+ATSVA+EG+DI CN+V+ Y
Sbjct: 399 RAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVVRYG 457
Query: 717 YVGNVIKMIQTRGRGRARGS-KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ N I M+Q RGR RA S F+ T + +++E IN E +M ++ +Q D+A
Sbjct: 458 LLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAE 517
Query: 776 FREKILHIQ-------THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEE 828
++ KI +Q + R++Q + PV E+ +LLC C + +D+R +E
Sbjct: 518 YQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRKVEG 574
Query: 829 CHYTVLGDAFKECF-VSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPV 886
H+ + F + VSR P K F ++ I C +NC WG+ + YK+ ++PV
Sbjct: 575 THHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVKLPV 632
Query: 887 IKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919
+K+ S ++E +Q KW F FD
Sbjct: 633 LKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD 663
>gi|29294649 dicer1 [Homo sapiens]
Length = 1922
Score = 113 bits (283), Expect = 7e-25
Identities = 142/583 (24%), Positives = 248/583 (42%), Gaps = 79/583 (13%)
Query: 231 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQG 288
E N+Y+P R YQ+EL L A NTI+C TG GKTF+++L+ + + +
Sbjct: 35 EAIHDNIYTP---RKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFS 90
Query: 289 QKGK-VVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIIL 346
+ GK VF N QQ S + + + + A+ Q + ++I+
Sbjct: 91 RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIM 150
Query: 347 TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
T + +N LK G + SLS L++FDECH HPY IM KL + P+++
Sbjct: 151 TCYVALNVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRIL 203
Query: 407 GLTASV--GVGDAKNTDE---ALDYICKLCASLDASVIATVKHNLEELEQVV-----YKP 456
GLTAS+ G D + +E L+ I K A ++ ++ + E VV
Sbjct: 204 GLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDR 263
Query: 457 QKFFRKVESRISDKFKYI------IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
+ ++ + + +I + RD+ ++K+I D + +
Sbjct: 264 SGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLG--------- 314
Query: 511 QWIVTVQKACMVFQMPD--KDEESRICKALFLYT-SHLRKYNDALIISEH---------- 557
W MV ++ K E+ + + L+T + LRK + + EH
Sbjct: 315 PWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIH--ALCEEHFSPASLDLKF 372
Query: 558 --ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
++ L+ L+ + R F+ +E + + + +S D E + E
Sbjct: 373 VTPKVIKLLEILRKYKPYERQQ-FESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEK-- 429
Query: 616 FILQEEYHLNPET---ITILFVKTRALVDALKNWI----EGNPKLSFLKPGILTGRG--- 665
E +P T I+FV+ R L I + +P+L+++ +TG G
Sbjct: 430 ---PETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGK 486
Query: 666 --KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
N+ Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct: 487 NQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRS 545
Query: 724 MIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
+Q++GR RA S +L + +E + YK EK++ +
Sbjct: 546 YVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN 588
>gi|29294651 dicer1 [Homo sapiens]
Length = 1922
Score = 113 bits (283), Expect = 7e-25
Identities = 142/583 (24%), Positives = 248/583 (42%), Gaps = 79/583 (13%)
Query: 231 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQG 288
E N+Y+P R YQ+EL L A NTI+C TG GKTF+++L+ + + +
Sbjct: 35 EAIHDNIYTP---RKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFS 90
Query: 289 QKGK-VVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIIL 346
+ GK VF N QQ S + + + + A+ Q + ++I+
Sbjct: 91 RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIM 150
Query: 347 TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
T + +N LK G + SLS L++FDECH HPY IM KL + P+++
Sbjct: 151 TCYVALNVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRIL 203
Query: 407 GLTASV--GVGDAKNTDE---ALDYICKLCASLDASVIATVKHNLEELEQVV-----YKP 456
GLTAS+ G D + +E L+ I K A ++ ++ + E VV
Sbjct: 204 GLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDR 263
Query: 457 QKFFRKVESRISDKFKYI------IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
+ ++ + + +I + RD+ ++K+I D + +
Sbjct: 264 SGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLG--------- 314
Query: 511 QWIVTVQKACMVFQMPD--KDEESRICKALFLYT-SHLRKYNDALIISEH---------- 557
W MV ++ K E+ + + L+T + LRK + + EH
Sbjct: 315 PWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIH--ALCEEHFSPASLDLKF 372
Query: 558 --ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
++ L+ L+ + R F+ +E + + + +S D E + E
Sbjct: 373 VTPKVIKLLEILRKYKPYERQQ-FESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEK-- 429
Query: 616 FILQEEYHLNPET---ITILFVKTRALVDALKNWI----EGNPKLSFLKPGILTGRG--- 665
E +P T I+FV+ R L I + +P+L+++ +TG G
Sbjct: 430 ---PETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGK 486
Query: 666 --KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
N+ Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct: 487 NQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRS 545
Query: 724 MIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
+Q++GR RA S +L + +E + YK EK++ +
Sbjct: 546 YVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN 588
>gi|74959747 Fanconi anemia, complementation group M [Homo sapiens]
Length = 2048
Score = 99.0 bits (245), Expect = 2e-20
Identities = 135/609 (22%), Positives = 262/609 (43%), Gaps = 107/609 (17%)
Query: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQL ++ A+ NT++C PTG GKTF++ ++ + + FP GKVVF A P+
Sbjct: 92 RDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFP---SGKVVFMAPTKPLV 147
Query: 304 EQQKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
QQ + + H +TG + A+ ++I + ++ LTPQ++VN+L +G
Sbjct: 148 TQQIEACYQVMGIPQSHMAEMTGSTQASTR----KEIWCSKRVLFLTPQVMVNDLSRGAC 203
Query: 361 PSLSIFTLMIFDECHNTSKQHPYNMI---MFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
P+ I L+I DE H + Y + + Y + +++ L+A+ G D
Sbjct: 204 PAAEIKCLVI-DEAHKALGNYAYCQVVRELVKYTNHF---------RILALSATPG-SDI 252
Query: 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVV-YKPQKFFRKVESRISDKFKYIIA 476
K + + + +I ++ E+ ++ Y ++ K+ + ++ I
Sbjct: 253 KAVQQVITNL----------LIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQK 302
Query: 477 QLMRDTESLAKRIC-------KDLENLSQIQ---NREFGTQKYEQWIVTVQKA------- 519
++ ES A+ + +D+ NL++ Q R+ + IV +Q+
Sbjct: 303 TYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFA 362
Query: 520 -CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS--EHARMKDAL---DYLKDFFSN 573
C+ + + ++L+ + + + S E R +D + ++L+ F+
Sbjct: 363 ICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAR 422
Query: 574 VR---AAGFDEIEQ-DLTQRF---EEKLQELESV------SRDPSNENPKLEDLCFILQE 620
R A G I+Q D ++F KL++LE V S + N K D
Sbjct: 423 TRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRD------- 475
Query: 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
ET ++F R V + + + + ++ G G T Q
Sbjct: 476 ------ETRVMIFSSFRDSVQEIAEMLSQHQPI--IRVMTFVGHASGKSTKGFTQKEQLE 527
Query: 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCF 739
++ F+ G +N L++T V +EG+DI + +L+I ++ + I+++Q GR GR R +
Sbjct: 528 VVKQFR-DGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIV 586
Query: 740 LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799
++ S +E++ N S Q+ ++++ I ++ + + Q P+
Sbjct: 587 IILSEG----------REERIYNQS----QSNKRSIYKA----ISSNRQVLHFYQRSPRM 628
Query: 800 VPDKENKKL 808
VPD N KL
Sbjct: 629 VPDGINPKL 637
>gi|76880486 activating signal cointegrator 1 complex subunit 3
isoform a [Homo sapiens]
Length = 2202
Score = 46.2 bits (108), Expect = 1e-04
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ F QG + K+V+ A + + FS+
Sbjct: 493 ENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSR 552
Query: 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ--ILVNNLKKGTIPSLSIFTLMI 370
E G V ++G + + + +++ TP+ +V G + I L+I
Sbjct: 553 RLEPLGIIVKELTGDMQLS---KSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLI 609
Query: 371 FDECH 375
DE H
Sbjct: 610 LDEVH 614
Score = 30.4 bits (67), Expect = 7.9
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN-QIPVYEQQKSVFSKYFERH 317
N ++ APTG GKT + L K+P K V+ A + V E+ + E+
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERMDDWKVRIEEKL 1400
Query: 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
G +V ++G + P + + D+I+ TP+
Sbjct: 1401 GKKVIELTG---DVTPDMKSIAKADLIVTTPE 1429
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 43.5 bits (101), Expect = 0.001
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + M G++ I A TG GKT LL H+ ++G+ P
Sbjct: 394 KPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTP 453
Query: 302 VYE---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--K 356
E Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct: 454 TRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query: 357 KGTIPSLSIFTLMIFDE 373
G + +L T ++ DE
Sbjct: 514 SGRVTNLRRVTYVVLDE 530
Score = 33.1 bits (74), Expect = 1.2
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
I++ FK +G +L+ATSVA G+D+ LV+ Y + + GR G+K +
Sbjct: 661 IINDFK-NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
Query: 741 LT 742
T
Sbjct: 720 YT 721
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GKN + APT GKT V+ L+ LK+ + +K K +F + V +++K F
Sbjct: 106 LEGKNLVYSAPTSAGKTLVAELLI---LKRVLEMRK-KALFILPFVSVAKEKKYYLQSLF 161
Query: 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI---LVNNLKKGTIPSLSIFTLMIF 371
+ G +V G G+T+ + + DI + T + L+N L + + + +++
Sbjct: 162 QEVGIKVDGYMGSTSPSRHFSSL----DIAVCTIERANGLINRLIEEN--KMDLLGMVVV 215
Query: 372 DECHNTSKQH 381
DE H H
Sbjct: 216 DELHMLGDSH 225
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 42.7 bits (99), Expect = 0.002
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 28/211 (13%)
Query: 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
Q PD DE K L + S KY ++ + A M A++ L + A +
Sbjct: 575 QKPDTDEAEDPEKMLANFESGKHKYRQTVMFT--ATMPPAVERLARSYLRRPAVVYIGSA 632
Query: 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+R E+K+ + +E+ K + L IL++ + + I+FV + D L
Sbjct: 633 GKPHERVEQKVFLM--------SESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVL 680
Query: 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+E K+ + + G+G+ + L KA G +IL+AT VA G
Sbjct: 681 AKSLE---KMGYNACTLHGGKGQEQREFA---------LSNLKA-GAKDILVATDVAGRG 727
Query: 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
IDI ++V+ Y+ N+ I GR GRA
Sbjct: 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRA 758
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 40.0 bits (92), Expect = 0.010
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct: 409 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI--------HGDKSQ------ 454
Query: 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y + + GR
Sbjct: 455 PERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 40.0 bits (92), Expect = 0.010
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct: 409 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI--------HGDKSQ------ 454
Query: 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y + + GR
Sbjct: 455 PERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 39.7 bits (91), Expect = 0.013
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 17/152 (11%)
Query: 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L ++ E L+ ++ + E KL+ LC + Y T ++F+ TR VD
Sbjct: 236 LVKKEELTLEGIKQFYINVEREEWKLDTLCDL----YETLTITQAVIFLNTRRKVD---- 287
Query: 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
W+ L G M + I+ F+ SG +LI T + GID
Sbjct: 288 WLTEKMHARDFTVSALHG--------DMDQKERDVIMREFR-SGSSRVLITTDLLARGID 338
Query: 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
+ Q +LVI Y+ N I GRG G K
Sbjct: 339 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 370
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 39.3 bits (90), Expect = 0.017
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 17/152 (11%)
Query: 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L ++ E L+ + + E KL+ LC + Y T ++F+ TR VD
Sbjct: 235 LVKKEELTLEGIRQFYINVEREEWKLDTLCDL----YETLTITQAVIFINTRRKVD---- 286
Query: 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
W+ + G M + I+ F+ SG +LI T + GID
Sbjct: 287 WLTEKMHARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSRVLITTDLLARGID 337
Query: 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
+ Q +LVI Y+ N I GRG G K
Sbjct: 338 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 369
>gi|40217847 activating signal cointegrator 1 complex subunit 3-like
1 [Homo sapiens]
Length = 2136
Score = 39.3 bits (90), Expect = 0.017
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 258 KNTIICAPTGCGKTFVSLLICEHHLKKF------PQGQKGKVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+L+ + K K+++ A + ++ F
Sbjct: 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 556
Query: 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K +G V ++G ++ ++ + II+ TP+ + K G + L+I
Sbjct: 557 KRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLII 613
Query: 371 FDECH 375
DE H
Sbjct: 614 LDEIH 618
Score = 35.8 bits (81), Expect = 0.19
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 259 NTIICAPTGCGKTFVSLLICEHH--LKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFE 315
N + APTG GKT IC L+ Q +G+ V+ + EQ + K+ +
Sbjct: 1345 NVFVGAPTGSGKT-----ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 1399
Query: 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLKKGTIPSLSIFTLMIFD 372
R +V ++G T+ ++ +++ +III TP+ IL K+ ++ L + D
Sbjct: 1400 RLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQR--KNVQNINLFVVD 1454
Query: 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
E H +GG +GP+ +VI
Sbjct: 1455 EVH------------------LIGGENGPVLEVI 1470
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 38.9 bits (89), Expect = 0.022
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 258 KNTIICAPTGCGKTFVSLLICEHHLKKF------PQGQKGKVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+L+ + K K+++ A + ++ F
Sbjct: 61 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 120
Query: 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K +G V ++G ++ ++ + II+ TP+ + K G + L++
Sbjct: 121 KRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIV 177
Query: 371 FDECH 375
DE H
Sbjct: 178 LDEIH 182
Score = 34.7 bits (78), Expect = 0.42
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 40/157 (25%)
Query: 259 NTIICAPTGCGKTFVSLLICEHH--LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE- 315
N + APTG GKT IC L+ Q +G+ V+ P+ Q+ V+ ++E
Sbjct: 909 NVFVGAPTGSGKT-----ICAEFAILRMLLQNSEGRCVYIT---PMRLWQEQVYMDWYEK 960
Query: 316 ---RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLKKGTIPSLSIFTLM 369
R +V ++G T+ ++ +++ +III TP+ IL K+ ++ L
Sbjct: 961 FQDRLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQR--KNVQNINLF 1015
Query: 370 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
+ DE H +GG +GP+ +VI
Sbjct: 1016 VVDEVH------------------LIGGENGPVLEVI 1034
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 38.1 bits (87), Expect = 0.038
Identities = 83/391 (21%), Positives = 157/391 (40%), Gaps = 72/391 (18%)
Query: 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
A+ T+EA KL A +D + K + EE + + + ++V + + IA
Sbjct: 423 AQKTEEARR---KLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIA 479
Query: 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+L + E R ++L Q + REF EQ V ++K+ + +++E +
Sbjct: 480 KLQKLHEKELARKEQELTKKLQTREREF----QEQMKVALEKSQSEYLKISQEKEQQESL 535
Query: 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
AL + L + + A + ++ + L+D Q + + ++ E
Sbjct: 536 AL-----------EELELQKKAILTESENKLRDL-------------QQEAETYRTRILE 571
Query: 597 LESVSRDPSNENP-KLEDLCFILQEEYHLNPETITILFVKTRALVDALKN-----WIEGN 650
LES EN + +DL L+ E + + + IT++ K + +++LK+ W E
Sbjct: 572 LESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTE-- 629
Query: 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD------EGI 704
KL L K T M +KC + D I+ + + E +
Sbjct: 630 -KLQVL---------KQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKL 679
Query: 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM---M 761
D+ Q L L + V+K AR L V+ K+Q + K+++ M
Sbjct: 680 DVKQTELESLSSELSEVLK---------ARHK----LEEELSVL-KDQTDKMKQELEAKM 725
Query: 762 NDSILRLQTWDEAVFREKILHIQTHEKFIRD 792
++ Q +++ +E + IQ EK ++D
Sbjct: 726 DEQKNHHQQQVDSIIKEHEVSIQRTEKALKD 756
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 37.7 bits (86), Expect = 0.050
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct: 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI--------HGDKSQQE---- 379
Query: 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ +L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct: 380 --RDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query: 736 SK 737
+K
Sbjct: 436 TK 437
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 37.4 bits (85), Expect = 0.065
Identities = 64/298 (21%), Positives = 115/298 (38%), Gaps = 59/298 (19%)
Query: 131 LINQECEEILQICSTKGMMAGAEKLVECLLRSDKE------------------------- 165
+IN E E ++I + M A A+ +E L+R +
Sbjct: 84 IINGESEAKVRIFGNREMKAKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGRNDI 143
Query: 166 --------NWPKTLKLALEKERNKFSELWIVEKG--IKDVETEDLED------KMETSDI 209
NW + +E E+ K+++L V+K I+ T + + + E +I
Sbjct: 144 VGEAEPLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNI 203
Query: 210 QIFYQEDPECQNLSENSCP--------PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTI 261
+ E + + + +C P + KP Q + ++G + I
Sbjct: 204 TCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLI 263
Query: 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGK------VVFFANQIPVYEQQKSVFSKYFE 315
+ A TG GKT L+ HL P ++ + V+ ++ ++ + + SKY
Sbjct: 264 VVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAEC--SKYSY 321
Query: 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G + I G N +E I + DIII TP L N+L+ +L T ++ DE
Sbjct: 322 K-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMNNSVNLRSITYLVIDE 377
>gi|130484567 HFM1 protein [Homo sapiens]
Length = 1435
Score = 37.0 bits (84), Expect = 0.085
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFER 316
+N +ICAPTG GKT V L L + P K+V+ A + Q+ + + F
Sbjct: 297 RNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP 356
Query: 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL-SIFTLMIFDECH 375
G ++G T + E +++ II+ TP+ + +K SL + L + DE H
Sbjct: 357 IGLNCKELTGDTVMDDLFE--IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVH 414
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 36.6 bits (83), Expect = 0.11
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 6/162 (3%)
Query: 216 DPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL 275
+P C C P + + KP Q + ++G + I A TG GKT L
Sbjct: 238 NPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Query: 276 LICEHHLKKFP--QGQKGK--VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAEN 331
+ HL P +GQ+ + ++ + Q + KY + G R + G +
Sbjct: 298 MPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGNRD 356
Query: 332 VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+E++ + DIII TP L N+L+ +L T ++ DE
Sbjct: 357 EQIEELKKGVDIIIATPGRL-NDLQMSNFVNLKNITYLVLDE 397
Score = 34.3 bits (77), Expect = 0.55
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L+ FK +G ILIAT +A G+D+ V +++ N+ + + GR GRA G
Sbjct: 530 LENFK-TGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSI 588
Query: 739 FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
LT N + E IN+ + N SI +E V + ++ + E+P+
Sbjct: 589 TTLTRNDWRVASELINILER--ANQSIP-----EELVSMAERFKAHQQKREMERKMERPQ 641
Query: 799 PVPDK 803
P K
Sbjct: 642 GRPKK 646
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 36.6 bits (83), Expect = 0.11
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 442 VKHNLEELEQVVYKPQKFF---RKVESRISDKFKYI------IAQLMRDTESLAKRICKD 492
V+H ++LE V + Q + + ++DK + + ++ + E A ++ KD
Sbjct: 1250 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1309
Query: 493 LENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
+ +LS Q+Q+ + Q+ T QK + ++ +EE + ++ +
Sbjct: 1310 VASLSSQLQDTQELLQEE-----TRQKLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLER 1364
Query: 552 LIISEHARMKDALDYLKDFFSNVRAAG-----FDEIEQDLTQRFEEKLQELESVSRDPSN 606
I + + ++ D+ L+DF S V A F + ++LTQ++EEK + + + +
Sbjct: 1365 HISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKAAAYDKLEKTKNR 1424
Query: 607 ENPKLEDLCFILQEEYHL 624
+L+DL L + L
Sbjct: 1425 LQQELDDLVVDLDNQRQL 1442
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 36.6 bits (83), Expect = 0.11
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 442 VKHNLEELEQVVYKPQKFF---RKVESRISDKFKYI------IAQLMRDTESLAKRICKD 492
V+H ++LE V + Q + + ++DK + + ++ + E A ++ KD
Sbjct: 1257 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1316
Query: 493 LENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
+ +LS Q+Q+ + Q+ T QK + ++ +EE + ++ +
Sbjct: 1317 VASLSSQLQDTQELLQEE-----TRQKLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLER 1371
Query: 552 LIISEHARMKDALDYLKDFFSNVRAAG-----FDEIEQDLTQRFEEKLQELESVSRDPSN 606
I + + ++ D+ L+DF S V A F + ++LTQ++EEK + + + +
Sbjct: 1372 HISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKAAAYDKLEKTKNR 1431
Query: 607 ENPKLEDLCFILQEEYHL 624
+L+DL L + L
Sbjct: 1432 LQQELDDLVVDLDNQRQL 1449
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 36.6 bits (83), Expect = 0.11
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 442 VKHNLEELEQVVYKPQKFF---RKVESRISDKFKYI------IAQLMRDTESLAKRICKD 492
V+H ++LE V + Q + + ++DK + + ++ + E A ++ KD
Sbjct: 1257 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1316
Query: 493 LENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
+ +LS Q+Q+ + Q+ T QK + ++ +EE + ++ +
Sbjct: 1317 VASLSSQLQDTQELLQEE-----TRQKLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLER 1371
Query: 552 LIISEHARMKDALDYLKDFFSNVRAAG-----FDEIEQDLTQRFEEKLQELESVSRDPSN 606
I + + ++ D+ L+DF S V A F + ++LTQ++EEK + + + +
Sbjct: 1372 HISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKAAAYDKLEKTKNR 1431
Query: 607 ENPKLEDLCFILQEEYHL 624
+L+DL L + L
Sbjct: 1432 LQQELDDLVVDLDNQRQL 1449
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 36.6 bits (83), Expect = 0.11
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 20/198 (10%)
Query: 442 VKHNLEELEQVVYKPQKFF---RKVESRISDKFKYI------IAQLMRDTESLAKRICKD 492
V+H ++LE V + Q + + ++DK + + ++ + E A ++ KD
Sbjct: 1250 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1309
Query: 493 LENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
+ +LS Q+Q+ + Q+ T QK + ++ +EE + ++ +
Sbjct: 1310 VASLSSQLQDTQELLQEE-----TRQKLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLER 1364
Query: 552 LIISEHARMKDALDYLKDFFSNVRAAG-----FDEIEQDLTQRFEEKLQELESVSRDPSN 606
I + + ++ D+ L+DF S V A F + ++LTQ++EEK + + + +
Sbjct: 1365 HISTLNIQLSDSKKKLQDFASTVEALEEGKKRFQKEIENLTQQYEEKAAAYDKLEKTKNR 1424
Query: 607 ENPKLEDLCFILQEEYHL 624
+L+DL L + L
Sbjct: 1425 LQQELDDLVVDLDNQRQL 1442
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 36.6 bits (83), Expect = 0.11
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 19/215 (8%)
Query: 416 DAKNTDEALDYICKLCASL----------DASVIATVKHNLEELEQVVYKPQKFFRKVES 465
D K+T++ L+ I K D V +KH + +++ + QK KVE
Sbjct: 368 DVKDTEKKLNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQKDKEKVEE 427
Query: 466 --RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNR-EFGTQKYEQWIVTVQKACMV 522
I K II + +L K K+ + L ++ + + TQ ++ + +K M
Sbjct: 428 FKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMG 487
Query: 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
F + S++ A +L ++N A +S+ + K+AL + R A +I
Sbjct: 488 FSKSVNEARSKMDVAQSELDIYLSRHNTA--VSQLTKAKEALIAASETLKE-RKAAIRDI 544
Query: 583 EQDLTQ---RFEEKLQELESVSRDPSNENPKLEDL 614
E L Q +EK +EL+ ++++ +N + DL
Sbjct: 545 EGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDL 579
Score = 30.8 bits (68), Expect = 6.1
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 719 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV-FR 777
G +I+ T G ++ K + +S I +E++N + ++ NDS +Q ++ V
Sbjct: 742 GQIIEQSGTMTGGGSKVMKGRMGSSLVIEISEEEVNKMESQLQNDSKKAMQIQEQKVQLE 801
Query: 778 EKILHIQTHEKFIRDSQEK 796
E+++ ++ E+ +R++ EK
Sbjct: 802 ERVVKLRHSEREMRNTLEK 820
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 36.6 bits (83), Expect = 0.11
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 19/215 (8%)
Query: 416 DAKNTDEALDYICKLCASL----------DASVIATVKHNLEELEQVVYKPQKFFRKVES 465
D K+T++ L+ I K D V +KH + +++ + QK KVE
Sbjct: 368 DVKDTEKKLNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQKDKEKVEE 427
Query: 466 --RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNR-EFGTQKYEQWIVTVQKACMV 522
I K II + +L K K+ + L ++ + + TQ ++ + +K M
Sbjct: 428 FKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMG 487
Query: 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
F + S++ A +L ++N A +S+ + K+AL + R A +I
Sbjct: 488 FSKSVNEARSKMDVAQSELDIYLSRHNTA--VSQLTKAKEALIAASETLKE-RKAAIRDI 544
Query: 583 EQDLTQ---RFEEKLQELESVSRDPSNENPKLEDL 614
E L Q +EK +EL+ ++++ +N + DL
Sbjct: 545 EGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDL 579
Score = 30.8 bits (68), Expect = 6.1
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 719 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV-FR 777
G +I+ T G ++ K + +S I +E++N + ++ NDS +Q ++ V
Sbjct: 742 GQIIEQSGTMTGGGSKVMKGRMGSSLVIEISEEEVNKMESQLQNDSKKAMQIQEQKVQLE 801
Query: 778 EKILHIQTHEKFIRDSQEK 796
E+++ ++ E+ +R++ EK
Sbjct: 802 ERVVKLRHSEREMRNTLEK 820
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 36.2 bits (82), Expect = 0.14
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 678 QKCILDAFKASG--DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G D L++T GI++A + V++++ N +Q + R G
Sbjct: 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query: 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL 766
K + L + G +E+E I K+KM+ D ++
Sbjct: 906 QKKQVNIYRLVTK-GTVEEEIIERAKKKMVLDHLV 939
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 35.8 bits (81), Expect = 0.19
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 19/169 (11%)
Query: 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct: 290 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIILA---GRDLMACAQTGSGKT 339
Query: 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct: 340 AAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVI 399
Query: 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct: 400 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKI-GLKQIKYLVLDE 447
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 35.8 bits (81), Expect = 0.19
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 19/169 (11%)
Query: 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct: 290 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIILA---GRDLMACAQTGSGKT 339
Query: 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct: 340 AAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVI 399
Query: 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct: 400 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKI-GLKQIKYLVLDE 447
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,004,427
Number of Sequences: 37866
Number of extensions: 1611500
Number of successful extensions: 4926
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4795
Number of HSP's gapped (non-prelim): 155
length of query: 925
length of database: 18,247,518
effective HSP length: 112
effective length of query: 813
effective length of database: 14,006,526
effective search space: 11387305638
effective search space used: 11387305638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.