Guide to the Human Genome
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Name: SPACA3 Sequence: fasta or formatted (215aa) NCBI GI: 27777653
Description:

sperm acrosome associated 3

Referenced in:

Galactose and Lactose
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         19           3
 C cysteine            5.6         12           1
 D aspartate           4.7         10           1
 E glutamate           3.3          7           1
 F phenylalanine       2.3          5           1
 G glycine             8.4         18           3
 H histidine           1.9          4           2
 I isoleucine          3.3          7           1
 K lysine              1.9          4           1
 L leucine            12.1         26           2
 M methionine          1.9          4           1
 N asparagine          4.2          9           2
 P proline             4.7         10           1
 Q glutamine           2.8          6           1
 R arginine            7.4         16           3
 S serine             12.1         26           2
 T threonine           3.3          7           1
 V valine              5.6         12           1
 W tryptophan          2.8          6           1
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm acrosome associated 3 
LYZL1                 0.318   lysozyme-like 1 
LYZL2                 0.306   lysozyme-like 2 
SPACA5                0.296   sperm acrosome associated 5 
SPACA5B               0.296   sperm acrosome associated 5B 
LYZ                   0.287   lysozyme precursor 
LYZL6                 0.268   lysozyme-like 6 
LYZL4                 0.240   lysozyme-like 4 
LALBA                 0.151   lactalbumin, alpha- precursor 
UBE4B                 0.021   ubiquitination factor E4B isoform 1 
LOC100287390          0.019   PREDICTED: hypothetical protein XP_002342820 
LOC100287390          0.019   PREDICTED: hypothetical protein 
FLVCR2                0.016   feline leukemia virus subgroup C cellular receptor ...
MTSS1L                0.016   metastasis suppressor 1-like 
SBK1                  0.012   SH3-binding kinase 1 
LOC100292188          0.009   PREDICTED: hypothetical protein 
LOC100288824          0.009   PREDICTED: hypothetical protein 
LOC100288824          0.009   PREDICTED: hypothetical protein XP_002343711 
LOC100130716          0.009   PREDICTED: similar to mucin 11 
SRCAP                 0.009   Snf2-related CBP activator protein 
MEX3C                 0.009   ring finger and KH domain containing 2 
MUC12                 0.007   PREDICTED: mucin 12 
EEF2                  0.007   eukaryotic translation elongation factor 2 
FOXF2                 0.007   forkhead box F2 
PLEKHG2               0.007   common-site lymphoma/leukemia guanine nucleotide ex...
SPTBN4                0.007   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
FAM53A                0.007   dorsal neural-tube nuclear protein 
MLLT3                 0.007   myeloid/lymphoid or mixed-lineage leukemia (trithor...
MAP3K7IP2             0.007   mitogen-activated protein kinase kinase kinase 7 int...
PDE1C                 0.007   phosphodiesterase 1C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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