Guide to the Human Genome
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Name: SLC38A11 Sequence: fasta or formatted (384aa) NCBI GI: 27735137
Description:

solute carrier family 38, member 11

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         18           1
 C cysteine            3.1         12           1
 D aspartate           2.9         11           2
 E glutamate           3.1         12           2
 F phenylalanine       8.6         33           2
 G glycine             6.8         26           2
 H histidine           2.3          9           2
 I isoleucine          8.6         33           2
 K lysine              2.6         10           1
 L leucine            12.0         46           3
 M methionine          2.9         11           1
 N asparagine          3.6         14           1
 P proline             3.9         15           1
 Q glutamine           2.9         11           2
 R arginine            2.1          8           1
 S serine              7.6         29           2
 T threonine           8.6         33           2
 V valine              9.9         38           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 38, member 11 
SLC38A1               0.108   amino acid transporter system A1 
SLC38A1               0.108   amino acid transporter system A1 
SLC38A5               0.103   solute carrier family 38, member 5 
SLC38A3               0.102   solute carrier family 38, member 3 
SLC38A6               0.097   solute carrier family 38, member 6 
SLC38A2               0.095   solute carrier family 38, member 2 
SLC38A10              0.082   solute carrier family 38, member 10 isoform a 
SLC38A10              0.082   solute carrier family 38, member 10 isoform b 
SLC38A7               0.075   solute carrier family 38, member 7 
SLC38A4               0.073   solute carrier family 38, member 4 
SLC38A4               0.073   solute carrier family 38, member 4 
SLC38A8               0.065   solute carrier family 38, member 8 
SLC38A9               0.044   solute carrier family 38, member 9 
SLC36A1               0.038   solute carrier family 36 member 1 
SLC36A4               0.019   solute carrier family 36 (proton/amino acid symporte...
MFSD1                 0.009   major facilitator superfamily domain containing 1 [H...
NDUFA9                0.008   NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9...
F2                    0.007   coagulation factor II preproprotein 
MST1                  0.007   macrophage stimulating 1 (hepatocyte growth factor-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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