Guide to the Human Genome
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Name: FNIP1 Sequence: fasta or formatted (1166aa) NCBI GI: 120953291
Description:

folliculin interacting protein 1 isoform 1

Referenced in:

Kidney

Other entries for this name:
alt prot [1138aa] folliculin interacting protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         53           2
 C cysteine            3.1         36           2
 D aspartate           6.3         74           2
 E glutamate           7.3         85           2
 F phenylalanine       4.0         47           3
 G glycine             5.1         59           2
 H histidine           2.2         26           2
 I isoleucine          4.7         55           2
 K lysine              5.6         65           3
 L leucine             9.1        106           2
 M methionine          2.9         34           2
 N asparagine          4.5         52           2
 P proline             5.0         58           2
 Q glutamine           4.9         57           2
 R arginine            5.1         59           2
 S serine             11.6        135           4
 T threonine           5.4         63           3
 V valine              5.8         68           3
 W tryptophan          0.9         11           1
 Y tyrosine            2.0         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   folliculin interacting protein 1 isoform 1 
FNIP1                 0.970   folliculin interacting protein 1 isoform 2 
FNIP2                 0.277   folliculin interacting protein 2 
C22orf30              0.005   hypothetical protein LOC253143 
NCOR1                 0.005   nuclear receptor co-repressor 1 
ANK1                  0.005   ankyrin 1 isoform 1 
ANK1                  0.005   ankyrin 1 isoform 3 
ANK1                  0.005   ankyrin 1 isoform 2 
ANK1                  0.005   ankyrin 1 isoform 4 
PUM2                  0.004   pumilio homolog 2 
UHRF1BP1              0.004   ICBP90 binding protein 1 
ASH1L                 0.003   absent, small, or homeotic 1-like 
ACRC                  0.003   ACRC protein 
KIF21A                0.003   kinesin family member 21A 
PCLO                  0.003   piccolo isoform 2 
PCLO                  0.003   piccolo isoform 1 
N4BP2                 0.003   Nedd4 binding protein 2 
MAP9                  0.003   aster-associated protein 
RSF1                  0.003   remodeling and spacing factor 1 
AFF3                  0.003   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.003   AF4/FMR2 family, member 3 isoform 1 
C6orf142              0.003   hypothetical protein LOC90523 
GCC2                  0.003   GRIP and coiled-coil domain-containing 2 
ABCA13                0.003   ATP binding cassette, sub-family A (ABC1), member 13...
ALAD                  0.003   delta-aminolevulinic acid dehydratase 
EIF2AK2               0.003   eukaryotic translation initiation factor 2-alpha ki...
PPP1R12B              0.003   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.003   protein phosphatase 1, regulatory (inhibitor) subunit...
C11orf57              0.003   hypothetical protein LOC55216 isoform b 
C11orf57              0.003   hypothetical protein LOC55216 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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