Guide to the Human Genome
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Name: SMOC2 Sequence: fasta or formatted (457aa) NCBI GI: 24308277
Description:

SPARC related modular calcium binding 2

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         30           3
 C cysteine            5.0         23           1
 D aspartate           6.3         29           2
 E glutamate           5.7         26           2
 F phenylalanine       2.6         12           1
 G glycine             6.1         28           2
 H histidine           2.6         12           1
 I isoleucine          2.2         10           1
 K lysine              9.2         42           2
 L leucine             7.4         34           2
 M methionine          0.7          3           1
 N asparagine          3.3         15           2
 P proline             7.2         33           2
 Q glutamine           6.1         28           2
 R arginine            5.7         26           1
 S serine              8.1         37           4
 T threonine           5.5         25           1
 V valine              5.9         27           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPARC related modular calcium binding 2 
SMOC1                 0.489   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.487   secreted modular calcium-binding protein 1 isoform 2...
TG                    0.058   thyroglobulin 
NID2                  0.056   nidogen 2 precursor 
NID1                  0.036   nidogen 1 precursor 
SPOCK2                0.033   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK1                0.029   sparc/osteonectin, cwcv and kazal-like domains proteo...
FST                   0.028   follistatin isoform FST317 precursor 
FST                   0.028   follistatin isoform FST344 precursor 
CD74                  0.026   CD74 antigen isoform a 
FSTL3                 0.026   follistatin-like 3 glycoprotein precursor 
IGFBP3                0.025   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.025   insulin-like growth factor binding protein 3 isoform...
IGFBP1                0.024   insulin-like growth factor binding protein 1 precurso...
SPOCK3                0.024   testican 3 isoform 1 
SPOCK3                0.024   testican 3 isoform 2 
SPARC                 0.024   secreted protein, acidic, cysteine-rich 
TMEFF2                0.024   transmembrane protein with EGF-like and two follista...
TMEFF1                0.022   transmembrane protein with EGF-like and two follista...
IGFBP4                0.020   insulin-like growth factor binding protein 4 precurs...
AGRN                  0.020   agrin 
SPARCL1               0.020   SPARC-like 1 
SPARCL1               0.020   SPARC-like 1 
IGFBP2                0.017   insulin-like growth factor binding protein 2, 36kDa ...
IGFBP6                0.016   insulin-like growth factor binding protein 6 
FSTL1                 0.015   follistatin-like 1 precursor 
TOX2                  0.014   TOX high mobility group box family member 2 isoform...
GUCA1C                0.013   guanylate cyclase activator 1C 
IGFBP5                0.012   insulin-like growth factor binding protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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