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Search of human proteins with 24308265
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308265 methyltransferase like 14 [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308265 methyltransferase like 14 [Homo sapiens] 947 0.0
gi|21361827 methyltransferase like 3 [Homo sapiens] 103 2e-22
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 54 2e-07
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 54 2e-07
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 54 4e-07
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 49 1e-05
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 49 1e-05
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 49 1e-05
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 49 1e-05
gi|55956788 nucleolin [Homo sapiens] 45 1e-04
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 45 1e-04
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 45 1e-04
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 43 5e-04
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 43 5e-04
gi|109452587 family with sequence similarity 98, member B isofor... 43 5e-04
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 41 0.002
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 41 0.002
gi|9966841 cell death regulator aven [Homo sapiens] 41 0.002
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 40 0.003
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 40 0.003
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 40 0.006
gi|12056465 fibrillarin [Homo sapiens] 39 0.007
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 39 0.010
gi|195972866 keratin 10 [Homo sapiens] 39 0.010
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 39 0.010
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 39 0.010
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi... 39 0.013
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 38 0.017
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 38 0.017
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 38 0.022
>gi|24308265 methyltransferase like 14 [Homo sapiens]
Length = 456
Score = 947 bits (2449), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAP 60
MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAP
Sbjct: 1 MDSRLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKDEQREIAETRETCRASYDTSAP 60
Query: 61 NAKRKYLDEGETDEDKMEEYKDELEMQQDEENLPYEEEIYKDSSTFLKGTQSLNPHNDYC 120
NAKRKYLDEGETDEDKMEEYKDELEMQQDEENLPYEEEIYKDSSTFLKGTQSLNPHNDYC
Sbjct: 61 NAKRKYLDEGETDEDKMEEYKDELEMQQDEENLPYEEEIYKDSSTFLKGTQSLNPHNDYC 120
Query: 121 QHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIR 180
QHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIR
Sbjct: 121 QHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIR 180
Query: 181 ELTPKFDVILLEPPLEEYYRETGITANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEG 240
ELTPKFDVILLEPPLEEYYRETGITANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEG
Sbjct: 181 ELTPKFDVILLEPPLEEYYRETGITANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEG 240
Query: 241 LDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRST 300
LDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRST
Sbjct: 241 LDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRST 300
Query: 301 DGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTV 360
DGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTV
Sbjct: 301 DGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTV 360
Query: 361 GPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGG 420
GPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGG
Sbjct: 361 GPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGG 420
Query: 421 TSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
TSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR
Sbjct: 421 TSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
>gi|21361827 methyltransferase like 3 [Homo sapiens]
Length = 580
Score = 103 bits (258), Expect = 2e-22
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 17/199 (8%)
Query: 166 PPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRETGITANEKCWTWDDIMKLEIDEIA 225
PP ++ DI D+ + KF V++ +PP + + T + D++ +L I +
Sbjct: 370 PPQWICCDIRYLDV-SILGKFAVVMADPPWDIHMELPYGTLTD-----DEMRRLNIP-VL 422
Query: 226 APRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTK 285
F+FLW +G ++LGR CL WGY R ++I W+KTN+ +T K
Sbjct: 423 QDDGFLFLWV-TGRAMELGRECLNLWGYERVDEIIWVKTNQLQ-RIIRTGRTGHWLNHGK 480
Query: 286 EHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLH 345
EHCL+G+KG + G +D D+I+ E + KP EI+ +IE G R++
Sbjct: 481 EHCLVGVKGNPQGFNQG------LDCDVIVAEVRSTSH--KPDEIYGMIERLSPGTRKIE 532
Query: 346 LFGRDSTIRPGWLTVGPTL 364
LFGR ++P W+T+G L
Sbjct: 533 LFGRPHNVQPNWITLGNQL 551
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/64 (48%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 392 IERLRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERG----GFRGGRGG 447
++R P+ P K GG RGGGRGG G GR FRG RG GFRGGRGG
Sbjct: 154 LQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRG---GGFRGGRGGGGGGFRGGRGG 210
Query: 448 AHRG 451
RG
Sbjct: 211 GFRG 214
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 406 SDRGGGAPRGG-GRGGTSAGRGRERNRSNFRGERGG-----FR-GGRGGAHRGG 452
S RGGG RGG RGG G R + ++FRG GG FR GGRGG RGG
Sbjct: 2 SFRGGG--RGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 410 GGAPRGGGRGGTSAGRGRERNRS--------NFRGE-RGGF--RGGRGGAHRG 451
GG RGGG GG + G R NFRG RGGF GGRGG ++G
Sbjct: 9 GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
Score = 33.1 bits (74), Expect = 0.54
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 414 RGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
RGGGRGG + G G N G FRGG GG G F
Sbjct: 4 RGGGRGGFNRGGGG--GGFNRGGSSNHFRGGGGGGGGGNF 41
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 11/37 (29%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGR 445
GGG RGGGRGG GRG G RGGF G+
Sbjct: 37 GGGNFRGGGRGG--FGRG---------GGRGGFNKGQ 62
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/64 (48%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 392 IERLRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERG----GFRGGRGG 447
++R P+ P K GG RGGGRGG G GR FRG RG GFRGGRGG
Sbjct: 154 LQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRG---GGFRGGRGGGGGGFRGGRGG 210
Query: 448 AHRG 451
RG
Sbjct: 211 GFRG 214
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/54 (51%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 406 SDRGGGAPRGG-GRGGTSAGRGRERNRSNFRGERGG-----FR-GGRGGAHRGG 452
S RGGG RGG RGG G R + ++FRG GG FR GGRGG RGG
Sbjct: 2 SFRGGG--RGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/53 (45%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 410 GGAPRGGGRGGTSAGRGRERNRS--------NFRGE-RGGF--RGGRGGAHRG 451
GG RGGG GG + G R NFRG RGGF GGRGG ++G
Sbjct: 9 GGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
Score = 33.1 bits (74), Expect = 0.54
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 414 RGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
RGGGRGG + G G N G FRGG GG G F
Sbjct: 4 RGGGRGGFNRGGGG--GGFNRGGSSNHFRGGGGGGGGGNF 41
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/37 (51%), Positives = 20/37 (54%), Gaps = 11/37 (29%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGR 445
GGG RGGGRGG GRG G RGGF G+
Sbjct: 37 GGGNFRGGGRGG--FGRG---------GGRGGFNKGQ 62
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 53.5 bits (127), Expect = 4e-07
Identities = 37/102 (36%), Positives = 42/102 (41%), Gaps = 22/102 (21%)
Query: 357 WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSP---PPKSKSDRGGGAP 413
W PT N N++ + AP +P P P S G
Sbjct: 426 WKCPNPTCENMNFSWRNECNQCKAP--------------KPDGPGGGPGGSHMGGNYGDD 471
Query: 414 RGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPP 455
R GGRGG G R R G+RGGFRGGRGG RGGF P
Sbjct: 472 RRGGRGGYDRGGYRGRG-----GDRGGFRGGRGGGDRGGFGP 508
Score = 42.4 bits (98), Expect = 9e-04
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 405 KSDRGGGAPRGGGRGGTSAGRGRERNRSNFR-----GERGGFRGGRGGAHRGGF 453
+ DRGG G G GG G G R+ + G RGG RGG GG+ RGGF
Sbjct: 210 QQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGG-RGGMGGSDRGGF 262
Score = 37.0 bits (84), Expect = 0.037
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 399 SPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
+P S + R RGGG G GRG R + G GG GG RGGFP
Sbjct: 362 NPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYGG------GGSGGGGRGGFP 411
Score = 36.2 bits (82), Expect = 0.063
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 403 KSKSDRGGGAPRGGGR-----GGTSAGRGRERNRSNFRGERGGFRGGRGGAHR---GGFP 454
+S GGG+ G G GG S G G++ RG GG GG GG + GG+
Sbjct: 181 QSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE 240
Query: 455 PR 456
PR
Sbjct: 241 PR 242
Score = 36.2 bits (82), Expect = 0.063
Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 407 DRGGGAPRGG-GRGGTSAGRGRERNRSNFRGERGGF---RGGRGGAHRGG 452
+RGGG RGG GRGG GRG + G RGGF GG GG R G
Sbjct: 376 NRGGGNGRGGRGRGG-PMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424
Score = 31.2 bits (69), Expect = 2.0
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 362 PTLTNSNYNAETYASYFSAPNS-------YLTGCTEEIERLRPKSPPPK-------SKSD 407
P+ T+ +Y + + +S + P S G + + + +PP + S
Sbjct: 106 PSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSS 165
Query: 408 RGGGAPRGGGRGGT-----SAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
GGG GGG G S+G G N GG GG G RGG
Sbjct: 166 GGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGG 215
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 412 APRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
AP+ G GG G G N+ +R RGGRGG RGG+ R
Sbjct: 449 APKPDGPGG---GPGGSHMGGNYGDDR---RGGRGGYDRGGYRGR 487
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/105 (37%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 357 WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGG-GAPRG 415
W P N N+ T + AP L P PPP RGG G RG
Sbjct: 466 WQCPNPGCGNQNFAWRTECNQCKAPKPE--------GFLPPPFPPPGGDRGRGGPGGMRG 517
Query: 416 G--------GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
G G GG G GR +R FRG RG RGG GG RGG
Sbjct: 518 GRGGLMDRGGPGGMFRG-GRGGDRGGFRGGRGMDRGGFGGGRRGG 561
Score = 34.7 bits (78), Expect = 0.18
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRG---GGAPRGGGRGGTSA 423
++Y +T SY AP+ Y + ++ + P S G GG G S
Sbjct: 182 TSYPPQT-GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSG 240
Query: 424 GRGRERNRSNF------RGERGGFRGGRGGA-HRGGF 453
R R R F RG RGG RGG G A RGGF
Sbjct: 241 PDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGF 277
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/62 (43%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 395 LRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
L K PP S GG P GRG RG G G GGRGG RGGFP
Sbjct: 388 LARKKPPMNSMR---GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRM-GGRGG-DRGGFP 442
Query: 455 PR 456
PR
Sbjct: 443 PR 444
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 400 PPPKSKSDRGGGAPRGGGRGGTSAGRGRERN---RSNFRGERGGFRGGRGGAHRGG 452
PPP G G P GG G GRG +R RG RG GG HR G
Sbjct: 411 PPPLRGGPGGPGGP--GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAG 464
Score = 30.0 bits (66), Expect = 4.5
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 402 PKSKSDRGGGAPRGGGRGG------TSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
P G RG GRGG + GRG R GERGGF G G
Sbjct: 232 PGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG 287
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/105 (37%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 357 WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGG-GAPRG 415
W P N N+ T + AP L P PPP RGG G RG
Sbjct: 521 WQCPNPGCGNQNFAWRTECNQCKAPKPE--------GFLPPPFPPPGGDRGRGGPGGMRG 572
Query: 416 G--------GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
G G GG G GR +R FRG RG RGG GG RGG
Sbjct: 573 GRGGLMDRGGPGGMFRG-GRGGDRGGFRGGRGMDRGGFGGGRRGG 616
Score = 37.7 bits (86), Expect = 0.022
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRG---GGAPRGGGRGGTSA 423
++Y +T SY AP+ Y + ++ + P S G GG G S
Sbjct: 238 TSYPPQT-GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSG 296
Query: 424 GRGRERNRSNF------RGERGGFRGGRGGAHRGGF 453
R R R F RG RGG RGG G RGGF
Sbjct: 297 PDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGF 332
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/62 (43%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 395 LRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
L K PP S GG P GRG RG G G GGRGG RGGFP
Sbjct: 443 LARKKPPMNSMR---GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRM-GGRGG-DRGGFP 497
Query: 455 PR 456
PR
Sbjct: 498 PR 499
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 400 PPPKSKSDRGGGAPRGGGRGGTSAGRGRERN---RSNFRGERGGFRGGRGGAHRGG 452
PPP G G P GG G GRG +R RG RG GG HR G
Sbjct: 466 PPPLRGGPGGPGGP--GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAG 519
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/105 (37%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 357 WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGG-GAPRG 415
W P N N+ T + AP L P PPP RGG G RG
Sbjct: 527 WQCPNPGCGNQNFAWRTECNQCKAPKPE--------GFLPPPFPPPGGDRGRGGPGGMRG 578
Query: 416 G--------GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
G G GG G GR +R FRG RG RGG GG RGG
Sbjct: 579 GRGGLMDRGGPGGMFRG-GRGGDRGGFRGGRGMDRGGFGGGRRGG 622
Score = 37.7 bits (86), Expect = 0.022
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRG---GGAPRGGGRGGTSA 423
++Y +T SY AP+ Y + ++ + P S G GG G S
Sbjct: 244 TSYPPQT-GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSG 302
Query: 424 GRGRERNRSNF------RGERGGFRGGRGGAHRGGF 453
R R R F RG RGG RGG G RGGF
Sbjct: 303 PDNRGRGRGGFDRGGMSRGGRGGGRGGMGAGERGGF 338
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/62 (43%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 395 LRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
L K PP S GG P GRG RG G G GGRGG RGGFP
Sbjct: 449 LARKKPPMNSMR---GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRM-GGRGG-DRGGFP 503
Query: 455 PR 456
PR
Sbjct: 504 PR 505
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 400 PPPKSKSDRGGGAPRGGGRGGTSAGRGRERN---RSNFRGERGGFRGGRGGAHRGG 452
PPP G G P GG G GRG +R RG RG GG HR G
Sbjct: 472 PPPLRGGPGGPGGP--GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAG 525
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/105 (37%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 357 WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGG-GAPRG 415
W P N N+ T + AP L P PPP RGG G RG
Sbjct: 522 WQCPNPGCGNQNFAWRTECNQCKAPKPE--------GFLPPPFPPPGGDRGRGGPGGMRG 573
Query: 416 G--------GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
G G GG G GR +R FRG RG RGG GG RGG
Sbjct: 574 GRGGLMDRGGPGGMFRG-GRGGDRGGFRGGRGMDRGGFGGGRRGG 617
Score = 34.7 bits (78), Expect = 0.18
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRG---GGAPRGGGRGGTSA 423
++Y +T SY AP+ Y + ++ + P S G GG G S
Sbjct: 238 TSYPPQT-GSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSG 296
Query: 424 GRGRERNRSNF------RGERGGFRGGRGGA-HRGGF 453
R R R F RG RGG RGG G A RGGF
Sbjct: 297 PDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGF 333
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/62 (43%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 395 LRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
L K PP S GG P GRG RG G G GGRGG RGGFP
Sbjct: 444 LARKKPPMNSMR---GGLPPREGRGMPPPLRGGPGGPGGPGGPMGRM-GGRGG-DRGGFP 498
Query: 455 PR 456
PR
Sbjct: 499 PR 500
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 400 PPPKSKSDRGGGAPRGGGRGGTSAGRGRERN---RSNFRGERGGFRGGRGGAHRGG 452
PPP G G P GG G GRG +R RG RG GG HR G
Sbjct: 467 PPPLRGGPGGPGGP--GGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNVQHRAG 520
Score = 30.0 bits (66), Expect = 4.5
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 402 PKSKSDRGGGAPRGGGRGG------TSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
P G RG GRGG + GRG R GERGGF G G
Sbjct: 288 PGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG 343
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/42 (61%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 408 RGGGAPRGGGRGGTSAGRG--RERNRSNFRGERGGFRGGRGG 447
RGGG GGRGG GRG R R F G RGGFRGGRGG
Sbjct: 656 RGGGRGGFGGRGGGRGGRGGFGGRGRGGF-GGRGGFRGGRGG 696
Score = 39.7 bits (91), Expect = 0.006
Identities = 25/44 (56%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 413 PRG-GGRGGTSAGRGRERNRSNFRGERGGFRG-GRGG-AHRGGF 453
P+G GG GG GRG R RG RGGF G GRGG RGGF
Sbjct: 647 PKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGGRGGF 690
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 407 DRGGG--APRGGGRGGTSAGRGRER------NRSNFRGERGGFRGGRG--GAHRGGF 453
DRGGG RGGG GG G G +R +R + G+RGG+ G RG G RGG+
Sbjct: 463 DRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY 519
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 407 DRGG-GAPRGGGRGGTSAGRGRER-----NRSNFRGERGGF-----RGGRGGAHRGG 452
DRGG G RGGG GG G G +R +R + G+RGG+ RGG GG GG
Sbjct: 479 DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGG 535
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 407 DRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
DRGG GG GG G G +R+R + G+RGG G GG GG+
Sbjct: 501 DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGG-GSGYGGDRSGGY 546
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 348 GRDSTIRPG-WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKS 406
GR + G W+ P+ N N+ + + P RP+ P
Sbjct: 345 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEP--------------RPEDSRPSGGD 390
Query: 407 --DRGGGAPRG----GGRGGTSAGRGRERNRSNFRGER---GGFRGGRGGAHRGG 452
RG G RG GGRGG G G +R+ + G+R GG+ G R G GG
Sbjct: 391 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGG 445
Score = 40.0 bits (92), Expect = 0.004
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 405 KSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAH---RGGF 453
+S G G RGGG GG G + G+RGG+ G RGG + RGG+
Sbjct: 447 RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGY 498
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 407 DRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
DRGGG+ GG R G G G +R+ + G+RGG GG G + G
Sbjct: 531 DRGGGSGYGGDRSG---GYGGDRSGGGYGGDRGGGYGGDRGGYGG 572
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 407 DRGG--GAPRGGGRGG---TSAGRGRERNRSNFRGER--GGFRGGRGGAHRG 451
DRGG G GGG GG + G +R+ + G+R GG+ G RGG + G
Sbjct: 411 DRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGG 462
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 403 KSKSDRGGGAPRGGGRGG--TSAGRGRERNRSNFRGERGGF----RGGRGGAHRGG 452
+S GG GGG G + G G +R+ + G+RGG RGG G RGG
Sbjct: 419 RSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG 474
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 405 KSDRGG--GAPRGGGRGGTSAGRGRERNRSN-FRGERGGFRGG-RGGAH---RGGF 453
+S GG G GGG GG +G G +R + G+RGG GG RGG + RGG+
Sbjct: 428 RSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGY 483
Score = 32.7 bits (73), Expect = 0.70
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 414 RGGGRGGTSAGRGRERNRSNFRGERGGFRGG 444
RGGG GG GRG R R F+G G + G
Sbjct: 323 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 353
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 408 RGGGAPRGGGRGGTSAGRGRERNRSN---FRGERGGFRGGRGGAHRGG 452
RGG GG GG +G G +RS+ + G+R G GG GG GG
Sbjct: 405 RGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSG--GGYGGDRSGG 450
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 405 KSDRGGGAPRGGGRG-GTSAGRGRERNRSNFRGERGGFRGGRGGAHR 450
+ +RG G +GGGRG G GR + G+RGGF+ G HR
Sbjct: 169 EDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFK--NFGGHR 213
Score = 29.3 bits (64), Expect = 7.7
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 14/45 (31%)
Query: 408 RGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
RGGG+ GGGR R R +RG RGGF+ GRGG + G
Sbjct: 323 RGGGS--GGGR----------RGRGGYRG-RGGFQ-GRGGDPKSG 353
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 45.1 bits (105), Expect = 1e-04
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 407 DRGGG--APRGGGRGGTSAGRGRER------NRSNFRGERGGFRGGRG--GAHRGGF 453
DRGGG RGGG GG G G +R +R + G+RGG+ G RG G RGG+
Sbjct: 466 DRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGY 522
Score = 43.1 bits (100), Expect = 5e-04
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 407 DRGG-GAPRGGGRGGTSAGRGRER-----NRSNFRGERGGF-----RGGRGGAHRGG 452
DRGG G RGGG GG G G +R +R + G+RGG+ RGG GG GG
Sbjct: 482 DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGG 538
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 407 DRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
DRGG GG GG G G +R+R + G+RGG G GG GG+
Sbjct: 504 DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGG-GSGYGGDRSGGY 549
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 348 GRDSTIRPG-WLTVGPTLTNSNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKS 406
GR + G W+ P+ N N+ + + P RP+ P
Sbjct: 348 GRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEP--------------RPEDSRPSGGD 393
Query: 407 --DRGGGAPRG----GGRGGTSAGRGRERNRSNFRGER---GGFRGGRGGAHRGG 452
RG G RG GGRGG G G +R+ + G+R GG+ G R G GG
Sbjct: 394 FRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGG 448
Score = 40.0 bits (92), Expect = 0.004
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 405 KSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAH---RGGF 453
+S G G RGGG GG G + G+RGG+ G RGG + RGG+
Sbjct: 450 RSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGY 501
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 407 DRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
DRGGG+ GG R G G G +R+ + G+RGG GG G + G
Sbjct: 534 DRGGGSGYGGDRSG---GYGGDRSGGGYGGDRGGGYGGDRGGYGG 575
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 407 DRGG--GAPRGGGRGG---TSAGRGRERNRSNFRGER--GGFRGGRGGAHRG 451
DRGG G GGG GG + G +R+ + G+R GG+ G RGG + G
Sbjct: 414 DRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGG 465
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 403 KSKSDRGGGAPRGGGRGG--TSAGRGRERNRSNFRGERGGF----RGGRGGAHRGG 452
+S GG GGG G + G G +R+ + G+RGG RGG G RGG
Sbjct: 422 RSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGG 477
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 405 KSDRGG--GAPRGGGRGGTSAGRGRERNRSN-FRGERGGFRGG-RGGAH---RGGF 453
+S GG G GGG GG +G G +R + G+RGG GG RGG + RGG+
Sbjct: 431 RSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGY 486
Score = 32.7 bits (73), Expect = 0.70
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 414 RGGGRGGTSAGRGRERNRSNFRGERGGFRGG 444
RGGG GG GRG R R F+G G + G
Sbjct: 326 RGGGSGGGRRGRGGYRGRGGFQGRGGDPKSG 356
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 408 RGGGAPRGGGRGGTSAGRGRERNRSN---FRGERGGFRGGRGGAHRGG 452
RGG GG GG +G G +RS+ + G+R G GG GG GG
Sbjct: 408 RGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSG--GGYGGDRSGG 453
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 405 KSDRGGGAPRGGGRG-GTSAGRGRERNRSNFRGERGGFRGGRGGAHR 450
+ +RG G +GGGRG G GR + G+RGGF+ G HR
Sbjct: 172 EDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFK--NFGGHR 216
Score = 29.3 bits (64), Expect = 7.7
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 14/45 (31%)
Query: 408 RGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
RGGG+ GGGR R R +RG RGGF+ GRGG + G
Sbjct: 326 RGGGS--GGGR----------RGRGGYRG-RGGFQ-GRGGDPKSG 356
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 401 PPKSKSDRGGGAPRGG--GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
P + RGG RGG RGG G GR + RG RGGFRGGRGG F R
Sbjct: 399 PLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYR 456
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 401 PPKSKSDRGGGAPRGG--GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
P + RGG RGG RGG G GR + RG RGGFRGGRGG F R
Sbjct: 399 PLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYR 456
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 43.1 bits (100), Expect = 5e-04
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 387 GCTEEIERLRPKSPPPKSKSDRGGGAPR--GGGRGGTSAGRGRERNRSNFRGERGGFR-- 442
G EIE P+ PP + + + GGG GGG GG G G R + G GG+
Sbjct: 310 GRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGG 369
Query: 443 -------GGRGGAHRGGFPPR 456
GG GG RGGF R
Sbjct: 370 GGGGGGWGGGGGGGRGGFQGR 390
Score = 37.0 bits (84), Expect = 0.037
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
GGG GG GG GRG + R ++ G RGG+ GGRGG G+
Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGRGDY-GGRGGY-GGRGGYGGRGY 410
Score = 36.2 bits (82), Expect = 0.063
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
GG GGG GG G G R RG+ GG RGG GG RGG+ R
Sbjct: 364 GGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGG-RGGYGG--RGGYGGR 408
Score = 32.3 bits (72), Expect = 0.91
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 409 GGGAPRGGGRG-GTSAGRGRERNRSNFRGE------RGGFRGGRGGAHRGGF 453
GGG RGG +G G GRG R + G GG GG GG GG+
Sbjct: 379 GGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGY 430
Score = 29.6 bits (65), Expect = 5.9
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 409 GGGAPRGGGRG-GTSAGRGRERNRSNFRGERGGFRG-GRGGAHRGG 452
GGG GGG G G GRG R + G RGG+ G G G + GG
Sbjct: 373 GGGWGGGGGGGRGGFQGRGDYGGRGGY-GGRGGYGGRGYGDPYGGG 417
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 404 SKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
S+ R G GGGRGG G NF G RGGF G RGG GG
Sbjct: 192 SQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSG-RGGFGGSRGGGGYGG 239
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 406 SDRGG--GAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
S RGG G+ GGG GG+ G N + G G+ GG G GG
Sbjct: 223 SGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGG 271
Score = 30.8 bits (68), Expect = 2.7
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 409 GGGAP--RGGGRGGTSAGRGRERNRSNFRGER----------GGFRGGRGGAHRGG 452
GGG P GG RG S G+G S + G GGF GG G GG
Sbjct: 254 GGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGG 309
Score = 30.8 bits (68), Expect = 2.7
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 407 DRGGGAPRGGGRGGTSAGRGR-------ERNRSNFRGERGGFRGGRGGAHRGG 452
+ GGG GGG G G G SNF +GG GGR GG
Sbjct: 291 NNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGG 343
Score = 30.4 bits (67), Expect = 3.5
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 403 KSKSDRGGGAPRGG-------GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
+S S GG GG GRGG +GRG F G RGG GG GG+ G
Sbjct: 196 RSGSGNFGGGRGGGFGGNDNFGRGGNFSGRG------GFGGSRGG--GGYGGSGDG 243
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 404 SKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
S+ R G GGGRGG G NF G RGGF G RGG GG
Sbjct: 192 SQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSG-RGGFGGSRGGGGYGG 239
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 41.2 bits (95), Expect = 0.002
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 396 RPKSPPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
RP + ++ GGG GGGR G GRG FRG RGG RGG GGA RG
Sbjct: 28 RPGAAAAVARGGGGGGGGDGGGRRGRGRGRG-------FRGARGG-RGG-GGAPRG 74
Score = 38.9 bits (89), Expect = 0.010
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 406 SDRGGGAP---RGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFP 454
S+R G A RGGG GG G GR RG GFRG RGG GG P
Sbjct: 26 SERPGAAAAVARGGGGGGGGDGGGRRG-----RGRGRGFRGARGGRGGGGAP 72
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 40.4 bits (93), Expect = 0.003
Identities = 23/52 (44%), Positives = 23/52 (44%)
Query: 400 PPPKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
P P S R G PRG G GG GRG R RGG G GGA G
Sbjct: 11 PGPGSARGRFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAEPG 62
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRG 426
S+ ++ Y+S G +ER P PP S S GAPRGGGRGG+ + RG
Sbjct: 328 SSSRSDLYSSGRDRVGRQERGLPPSMERGYP--PPRDSYSSSSRGAPRGGGRGGSRSDRG 385
Query: 427 RERNR 431
R+R
Sbjct: 386 GGRSR 390
Score = 31.6 bits (70), Expect = 1.6
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 396 RPKSPPPKSKSDRGGGAPRG--GGRGGTSAGRGRERN-----------RSNFRGERGGFR 442
R PPP+S+ G PRG GGRGG+ RG N RG
Sbjct: 94 RGPPPPPRSR-----GPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLP 148
Query: 443 GGRGGAHRGGFPP 455
RG R G PP
Sbjct: 149 VKRGPPPRSGGPP 161
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 404 SKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
S+ RGGG+ GRGG G G R G RGG+ GG GG RG +
Sbjct: 212 SQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGG-GGGSRGSY 260
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 409 GGGAPRGG---GRGGTSAGRGRERNR--------SNFRGERGGFRGGRGGAHRGGF 453
GG RGG GRGG G G R + F G+ G + GG G + RGG+
Sbjct: 234 GGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGY 289
Score = 31.2 bits (69), Expect = 2.0
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 408 RGGGAPRGG---GRGGTSAGR-----GRERNRSNFRGERGGFR--GGRGGAHRGG 452
RGG GG GRGG GR G +R ++ G GG+ GG GG + GG
Sbjct: 226 RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGG 280
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 39.3 bits (90), Expect = 0.007
Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 410 GGAPRGGGRGGTS-----AGRGRERNRSNFRGERGGFRG-GRGGAHRGG 452
G +PRGGG GG GRG RG GGFRG GRGG GG
Sbjct: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGG 52
Score = 37.7 bits (86), Expect = 0.022
Identities = 27/56 (48%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 399 SPPPKSKSDRGGGAPRGG--GRGGTSAGRGRERNRSNFRGE-RGGFRGGRGGAHRG 451
SP RGG RGG GRGG GRGR FRG RGG GG GG G
Sbjct: 6 SPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG---GGFRGRGRGGGGGGGGGGGGG 58
Score = 37.4 bits (85), Expect = 0.028
Identities = 21/48 (43%), Positives = 22/48 (45%)
Query: 405 KSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
+ RGG GGGRG RGR R G GG G GG H GG
Sbjct: 21 RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
Score = 33.5 bits (75), Expect = 0.41
Identities = 25/56 (44%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 406 SDRGGG-APRG-----GGRGGTSAGRGRERNRSNFRGE---RGGFRGGRGGAHRGG 452
S RGGG RG GGRGG G FRG GG GG GG RGG
Sbjct: 6 SPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG 61
Score = 32.3 bits (72), Expect = 0.91
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 408 RGGG----APRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
RGGG GGG GG G GR + G RG RGG+ G G
Sbjct: 36 RGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 38.9 bits (89), Expect = 0.010
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 367 SNYNAETYASYFSAPNSYLTGCTEEIERLRPKSPPPKSKSDRGGGAPRGGGRGGTSAGRG 426
S+ ++ Y+S G +ER P PP S S G PRGGGRGG+ + RG
Sbjct: 133 SSSRSDLYSSGRDQVGRQERGLPPSMERGYP--PPRDSYSSSSRGTPRGGGRGGSRSDRG 190
Query: 427 RERNR 431
R+R
Sbjct: 191 GGRSR 195
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 38.9 bits (89), Expect = 0.010
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
G G+ GGGRGG S G G S GG GG GG+ GG+
Sbjct: 455 GEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGY 499
Score = 34.7 bits (78), Expect = 0.18
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 410 GGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
GG RGGG G G G S+ G GG G GG + GG
Sbjct: 460 GGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGG 502
Score = 33.9 bits (76), Expect = 0.31
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 409 GGGAPRGG-GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
GGG+ GG G G +S G G + G GG GG GG GG
Sbjct: 505 GGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGG 549
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGG-FRGGRGGAHRGGF 453
G G GGG GG S+G G S+ G GG GG GG+ GG+
Sbjct: 490 GHGGSSGGGYGGGSSGGG-----SSGGGYGGGSSSGGHGGSSSGGY 530
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 410 GGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGF 453
GG GGG GG S+ G + S GG+ GG G GG+
Sbjct: 505 GGGSSGGGYGGGSSSGGHGGSSS------GGYGGGSSGGGGGGY 542
Score = 30.8 bits (68), Expect = 2.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 410 GGAPRGGGRGGTSAGRGRE---RNRSNFRGERGGFRGGRGGAHRGG 452
GG GGG G G G S+ G GG GG GG + GG
Sbjct: 500 GGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGG 545
Score = 29.6 bits (65), Expect = 5.9
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 404 SKSDRGGGAPRGGGRGGT----SAGRGRERNRSNFRGERGGFRGGR----------GGAH 449
SK GGG GG GG+ S+G G S G GGF GG GG++
Sbjct: 39 SKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSY 98
Query: 450 RGGF 453
G F
Sbjct: 99 GGSF 102
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 410 GGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGR--GGAHRGGF 453
GG GG GG S+G G G GG+ GG GG+ GG+
Sbjct: 470 GGGYGGGSSGGGSSGGGHGGGHGGSSG--GGYGGGSSGGGSSGGGY 513
Score = 29.3 bits (64), Expect = 7.7
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
GGG+ GG GG S G G F G GGF GG GG G
Sbjct: 103 GGGSFGGGSFGGGSFGGG------GFGG--GGFGGGFGGGFGG 137
Score = 29.3 bits (64), Expect = 7.7
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGG--RGGAHRGG 452
GGG+ GG GG G G S+ G GG GG GG + GG
Sbjct: 474 GGGSSGGGSSGG---GHGGGHGGSSGGGYGGGSSGGGSSGGGYGGG 516
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.010
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 394 RLRPKSPPPKSK--SDRGGGAPRG--GGRGGTSAGRGRERNRSNFRGERGGFR--GGRGG 447
R+ K PK S GGG R GGRGG G GR++N + +G GG+ GG GG
Sbjct: 167 RVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLS-KGGGGGYNSYGGYGG 225
Query: 448 AHRGGF 453
GG+
Sbjct: 226 GGGGGY 231
Score = 32.7 bits (73), Expect = 0.70
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 404 SKSDRGG--GAPRGGGRGGTSAGRGRERNRSNFRGERGG-------FRGGRGGAHRGG 452
S+S RGG G RGGGR +G +++ G GG + GG GG+ GG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGG 245
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 38.9 bits (89), Expect = 0.010
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 403 KSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
+SK RG G RG GRG S GRG+ R RG G RGG ++GG
Sbjct: 315 RSKDSRGRGLSRGRGRG--SRGRGKGMGRGRGRG------GSRGGMNKGG 356
Score = 37.4 bits (85), Expect = 0.028
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 403 KSKSDRGGGAPRGGGRGGTSAG-RGRERNRSNFRGERGGFRGGRGGAH 449
K S RG G+ RG GRG G RG R R RG RG RG GG H
Sbjct: 231 KEGSSRGRGS-RGRGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGGDH 277
>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapiens]
Length = 1270
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 409 GGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGG 452
G GA GGG G S G R + ++RG GG+RG GG RGG
Sbjct: 1209 GYGAGVGGGYRGVSRGGFRGNSGGDYRGPSGGYRGS-GGFQRGG 1251
Score = 32.0 bits (71), Expect = 1.2
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 400 PPPKSKSDRGGGAPRGGGR-------GGTSAGR----GRERNRSNFRGERG-GFRGGRGG 447
PP ++ D G G RGG GG S+G G + ++FR G G GG G
Sbjct: 1161 PPKMARYDNGSGYRRGGSSYSGGGYGGGYSSGGYGSGGYGGSANSFRAGYGAGVGGGYRG 1220
Query: 448 AHRGGF 453
RGGF
Sbjct: 1221 VSRGGF 1226
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 38.1 bits (87), Expect = 0.017
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 402 PKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
P S+ R G GGGRGG +G + NF G GGF G GG+ G
Sbjct: 190 PSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSG-CGGFGGSHGGSADG 238
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 38.1 bits (87), Expect = 0.017
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 402 PKSKSDRGGGAPRGGGRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRG 451
P S+ R G GGGRGG +G + NF G GGF G GG+ G
Sbjct: 190 PSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSG-CGGFGGSHGGSADG 238
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/52 (48%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 408 RGGGAPRG----GGRGGTSAGRGRERNRSNFRGE---RGGFRGGRGGAHRGG 452
RGGG RG GRGG GRGR R R RG RG R GG+ GG
Sbjct: 55 RGGGRGRGRWKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGG 106
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/50 (48%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 405 KSDRGGGAPRGGGRG-GTSAGRGRERNRSNFRGERGGF-RGGRGGAHRGG 452
++ RGGG G GRG G GRGR R R R GG GG GG GG
Sbjct: 66 QAGRGGGVC-GRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGG 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,989,824
Number of Sequences: 37866
Number of extensions: 1053879
Number of successful extensions: 9994
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 7313
Number of HSP's gapped (non-prelim): 1851
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.