Guide to the Human Genome
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Name: FEM1A Sequence: fasta or formatted (669aa) NCBI GI: 24308163
Description:

fem-1 homolog a

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         68           2
 C cysteine            2.5         17           2
 D aspartate           5.1         34           1
 E glutamate           7.8         52           2
 F phenylalanine       2.2         15           1
 G glycine             7.9         53           3
 H histidine           3.1         21           1
 I isoleucine          3.1         21           2
 K lysine              3.7         25           2
 L leucine            12.7         85           3
 M methionine          2.1         14           1
 N asparagine          3.1         21           2
 P proline             5.4         36           2
 Q glutamine           4.3         29           2
 R arginine            6.6         44           2
 S serine              5.4         36           3
 T threonine           5.1         34           2
 V valine              5.4         36           2
 W tryptophan          0.4          3           1
 Y tyrosine            3.7         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fem-1 homolog a 
FEM1C                 0.423   feminization 1 homolog a 
LOC652634             0.386   PREDICTED: similar to fem-1 homolog a, partial [Hom...
FEM1B                 0.263   fem-1 homolog b 
ANKRD50               0.078   ankyrin repeat domain 50 
ANKRD17               0.065   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.065   ankyrin repeat domain protein 17 isoform b 
ANKHD1                0.063   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.063   ankyrin repeat and KH domain containing 1 isoform 2 ...
ANKHD1                0.063   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.063   ANKHD1-EIF4EBP3 protein 
TANC1                 0.062   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.062   tetratricopeptide repeat, ankyrin repeat and coiled...
ANK1                  0.059   ankyrin 1 isoform 9 
ANK1                  0.059   ankyrin 1 isoform 1 
ANK1                  0.059   ankyrin 1 isoform 3 
ANK1                  0.059   ankyrin 1 isoform 2 
ANK1                  0.059   ankyrin 1 isoform 4 
ANK2                  0.059   ankyrin 2 isoform 3 
ANK2                  0.059   ankyrin 2 isoform 2 
ANK2                  0.059   ankyrin 2 isoform 1 
DAPK1                 0.058   death-associated protein kinase 1 
ESPNL                 0.058   espin-like 
ANK3                  0.057   ankyrin 3 isoform 1 
KIDINS220             0.055   kinase D-interacting substrate of 220 kDa 
ESPN                  0.054   espin 
ANKRD29               0.053   ankyrin repeat domain 29 
ANKRD28               0.052   ankyrin repeat domain 28 
ANKRD16               0.050   ankyrin repeat domain 16 isoform c 
ANKRD16               0.050   ankyrin repeat domain 16 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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