Search of human proteins with 241982806

Search of human proteins with 241982806

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo
sapiens]
         (96 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo sapiens]   201   1e-52
gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo sapiens]   132   8e-32
gi|13376856 solute carrier family 19, member 3 [Homo sapiens]          53   5e-08
gi|27734719 solute carrier family 19, member 2 [Homo sapiens]          48   2e-06
gi|34808710 solute carrier family 19 member 1 [Homo sapiens]           39   9e-04
gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens]           28   1.2  
gi|11560152 zinc finger protein 335 [Homo sapiens]                     27   4.6  
gi|15042961 HLA-B associated transcript 4 [Homo sapiens]               27   4.6  
gi|95147559 ankyrin repeat domain 43 [Homo sapiens]                    27   4.6  
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     26   6.0  
gi|24797153 faciogenital dysplasia protein [Homo sapiens]              26   6.0  
gi|126116596 asp (abnormal spindle)-like, microcephaly associate...    26   7.8  
gi|113408672 PREDICTED: zyg-11 homolog A [Homo sapiens]                26   7.8  
gi|226437632 zyg-11 homolog A [Homo sapiens]                           26   7.8  

>gi|241982806 hypothetical protein LOC56918 isoform 2 [Homo
          sapiens]
          Length = 96

 Score =  201 bits (511), Expect = 1e-52
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
          MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS
Sbjct: 1  MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60

Query: 61 FQNCFTCRTAPSLVMVLSWKSGVRREVPVHPSYAKY 96
          FQNCFTCRTAPSLVMVLSWKSGVRREVPVHPSYAKY
Sbjct: 61 FQNCFTCRTAPSLVMVLSWKSGVRREVPVHPSYAKY 96


>gi|241982804 hypothetical protein LOC56918 isoform 1 [Homo
          sapiens]
          Length = 150

 Score =  132 bits (331), Expect = 8e-32
 Identities = 68/85 (80%), Positives = 72/85 (84%), Gaps = 5/85 (5%)

Query: 1  MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60
          MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS
Sbjct: 1  MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPS 60

Query: 61 FQNCFTCRTAPSLVMVLSWKSGVRR 85
          FQN      +PS   +  W  G+R+
Sbjct: 61 FQNLL----SPS-EKLEPWDPGMRK 80


>gi|13376856 solute carrier family 19, member 3 [Homo sapiens]
          Length = 496

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 26/39 (66%), Positives = 31/39 (79%)

Query: 1   MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
           +E YAL FGIN FIAL+IQ I+T+ VVD +GL LPV IQ
Sbjct: 400 VERYALVFGINTFIALVIQTIMTVIVVDQRGLNLPVSIQ 438


>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
          Length = 497

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 1   MEDYALTFGINPFIALMIQPIVTMTVVDNQGLGLPVDIQ 39
           ME YAL FG+N FIAL +Q ++T+ VVD  GLGL +  Q
Sbjct: 417 MERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQ 455


>gi|34808710 solute carrier family 19 member 1 [Homo sapiens]
          Length = 591

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 5   ALTFGINPFIALMIQPIVTMTVVDNQGLGLPV 36
           AL FG+N F A +++ I+T  V D +GLGLPV
Sbjct: 397 ALVFGVNTFFATIVKTIITFIVSDVRGLGLPV 428


>gi|4885649 SUMO-1 activating enzyme subunit 2 [Homo sapiens]
          Length = 640

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 43  KPSPKASQMLPPDLGPPSFQNCFTCRTAPSLVMVLS 78
           +P+P+   ++P  L PP+  NC+ C + P + + L+
Sbjct: 421 QPNPRKKLLVPCALDPPN-PNCYVCASKPEVTVRLN 455


>gi|11560152 zinc finger protein 335 [Homo sapiens]
          Length = 1342

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 39  QHKAKPSPKASQMLPPDLGPPSFQNCFTCRTAPSLV 74
           QH A P P  S   PP++ P +    F    APSL+
Sbjct: 735 QHSAAPGPPPSSPGPPEIPPEA--TTFQSSEAPSLL 768


>gi|15042961 HLA-B associated transcript 4 [Homo sapiens]
          Length = 356

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 9   GINPFIALMIQPIVTMTVVDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPPSFQNCFTCR 68
           G+ P       PI T+   D +GLG      +++ P P+ +        P         R
Sbjct: 273 GLGPRGEGRANPIPTVLKRDQEGLG------YRSAPQPRVTHF------PAWDTRAVAGR 320

Query: 69  TAPSLVMVLSWKSGVRRE 86
             P  V  LSW+   RRE
Sbjct: 321 ERPPRVATLSWREERRRE 338


>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
          Length = 549

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)

Query: 42  AKPSPKASQMLPPDLGPPSFQNCFT---CRTAPSLVMVLSWKSGVRREVPVHPS 92
           A+P P A++      GPP  + C     C  AP+ + + + + G+RR++   PS
Sbjct: 201 AEPGPGAAK------GPPQQKPCMLPVRCVPAPATLRLRAEEPGLRRQLSEEPS 248


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 6/33 (18%)

Query: 27  VDNQGLGLPVDIQHKAKPSPKASQMLPPDLGPP 59
           V   G+G P        P PK    LP D+GPP
Sbjct: 684 VGQPGIGFP------GPPGPKGVDGLPGDMGPP 710


>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
          Length = 961

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 34  LPVDIQHKAKPSPKASQMLPPDLGPPSFQNCFTCRTAPSLVMVLSWKSGVRREVPVHPSY 93
           L +D     +P P+  Q L  D GPP+        T       L    G + +VP  PSY
Sbjct: 115 LSLDPGQSLEPHPEGPQRLRSDPGPPT-------ETPSQRPSPLKRAPGPKPQVPPKPSY 167


>gi|126116596 asp (abnormal spindle)-like, microcephaly associated
           [Homo sapiens]
          Length = 3477

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 32  LGLPVDIQHKAKPSPKASQMLPPDLGPPSFQNCFTCRTAPSLVMVLSW---KSGVRREV 87
           L L +D  ++     K S     DLG    Q CF  +    +V+ ++W   K G  RE+
Sbjct: 63  LSLALDNPNEEVAEVKISHFPAADLGFSVSQRCFVLQPKEKIVISVNWTPLKEGRVREI 121


>gi|113408672 PREDICTED: zyg-11 homolog A [Homo sapiens]
          Length = 759

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 26  VVDNQGLGLPVDIQHKAKPSPKASQM 51
           +V+ +GL L  DIQ  ++ +PKA Q+
Sbjct: 709 LVEEEGLQLLCDIQEHSEATPKAQQI 734


>gi|226437632 zyg-11 homolog A [Homo sapiens]
          Length = 759

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 26  VVDNQGLGLPVDIQHKAKPSPKASQM 51
           +V+ +GL L  DIQ  ++ +PKA Q+
Sbjct: 709 LVEEEGLQLLCDIQEHSEATPKAQQI 734


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,235,156
Number of Sequences: 37866
Number of extensions: 198963
Number of successful extensions: 672
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 16
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.