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Search of human proteins with 239758145
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239758145 PREDICTED: similar to ADP-ribosylation factor
binding protein 2 [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758145 PREDICTED: similar to ADP-ribosylation factor bindi... 271 1e-73
gi|9558751 ADP-ribosylation factor binding protein 2 [Homo sapiens] 261 1e-70
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b... 144 2e-35
gi|48527952 golgi associated, gamma adaptin ear containing, ARF ... 144 2e-35
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh... 141 1e-34
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo... 141 1e-34
gi|71773010 adaptor-related protein complex 1, gamma 1 subunit i... 75 1e-14
gi|71772942 adaptor-related protein complex 1, gamma 1 subunit i... 75 1e-14
gi|4503843 adaptor-related protein complex 1, gamma 2 subunit [H... 64 3e-11
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 30 0.76
gi|122937211 KIAA0368 protein [Homo sapiens] 29 0.99
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 29 0.99
gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo ... 28 1.7
gi|239751056 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo ... 28 1.7
gi|55770830 chromobox homolog 4 [Homo sapiens] 28 1.7
gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo ... 28 2.9
gi|40217810 cell cycle progression 2 protein isoform 2 [Homo sap... 27 3.8
gi|13569848 cell cycle progression 2 protein isoform 2 [Homo sap... 27 3.8
gi|40217812 cell cycle progression 2 protein isoform 1 [Homo sap... 27 3.8
gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC... 27 6.4
gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC... 27 6.4
gi|12383060 cytochrome P450, family 3, subfamily A, polypeptide ... 26 8.4
gi|16933535 cytochrome P450, family 3, subfamily A, polypeptide ... 26 8.4
gi|16933533 cytochrome P450, family 3, subfamily A, polypeptide ... 26 8.4
gi|118918395 fibronectin type III domain containing 3A isoform 1... 26 8.4
gi|118918397 fibronectin type III domain containing 3A isoform 2... 26 8.4
gi|189181750 human immunodeficiency virus type I enhancer bindin... 26 8.4
gi|116089331 human immunodeficiency virus type I enhancer bindin... 26 8.4
gi|150456424 RW1 protein [Homo sapiens] 26 8.4
>gi|239758145 PREDICTED: similar to ADP-ribosylation factor binding
protein 2 [Homo sapiens]
Length = 134
Score = 271 bits (692), Expect = 1e-73
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MVGKGSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVP 60
MVGKGSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVP
Sbjct: 1 MVGKGSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVP 60
Query: 61 KSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG 120
KSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG
Sbjct: 61 KSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG 120
Query: 121 EVKDFPDLAVLGAA 134
EVKDFPDLAVLGAA
Sbjct: 121 EVKDFPDLAVLGAA 134
>gi|9558751 ADP-ribosylation factor binding protein 2 [Homo sapiens]
Length = 613
Score = 261 bits (667), Expect = 1e-70
Identities = 130/133 (97%), Positives = 130/133 (97%)
Query: 2 VGKGSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPK 61
V SLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPK
Sbjct: 481 VKPSSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPK 540
Query: 62 SMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGE 121
SMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGE
Sbjct: 541 SMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGE 600
Query: 122 VKDFPDLAVLGAA 134
VKDFPDLAVLGAA
Sbjct: 601 VKDFPDLAVLGAA 613
>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 1 [Homo sapiens]
Length = 639
Score = 144 bits (364), Expect = 2e-35
Identities = 66/118 (55%), Positives = 94/118 (79%)
Query: 9 PLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQ 68
P+ VYD++GFRIL HF++ PG +V V++++M+STAPQP+ +I+FQ AVPK M+VKLQ
Sbjct: 514 PVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQ 573
Query: 69 PASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFP 126
P S ++LPAF+P++ P+ I+Q+LLL NP KE +RLRYKLTF G Q ++E+G+V FP
Sbjct: 574 PPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGDVDQFP 631
>gi|48527952 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 2 [Homo sapiens]
Length = 552
Score = 144 bits (364), Expect = 2e-35
Identities = 66/118 (55%), Positives = 94/118 (79%)
Query: 9 PLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQ 68
P+ VYD++GFRIL HF++ PG +V V++++M+STAPQP+ +I+FQ AVPK M+VKLQ
Sbjct: 427 PVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQ 486
Query: 69 PASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFP 126
P S ++LPAF+P++ P+ I+Q+LLL NP KE +RLRYKLTF G Q ++E+G+V FP
Sbjct: 487 PPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGDVDQFP 544
>gi|14719400 ADP-ribosylation factor binding protein 3 isoform short
[Homo sapiens]
Length = 690
Score = 141 bits (356), Expect = 1e-34
Identities = 69/124 (55%), Positives = 91/124 (73%)
Query: 9 PLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQ 68
P+ YD+NGFRIL HF++ PG P+V V++++M++TAP PV I+ Q AVPKSM+VKLQ
Sbjct: 565 PVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNTAPLPVKSIVLQAAVPKSMKVKLQ 624
Query: 69 PASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDL 128
P S ++L FSP+ PPA I+Q++LL NP KE +RLRYKLTF G Q +EVGEV FP +
Sbjct: 625 PPSGTELSPFSPIQPPAAITQVMLLANPLKEKVRLRYKLTFALGEQLSTEVGEVDQFPPV 684
Query: 129 AVLG 132
G
Sbjct: 685 EQWG 688
>gi|20336267 ADP-ribosylation factor binding protein 3 isoform long
[Homo sapiens]
Length = 723
Score = 141 bits (356), Expect = 1e-34
Identities = 69/124 (55%), Positives = 91/124 (73%)
Query: 9 PLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQ 68
P+ YD+NGFRIL HF++ PG P+V V++++M++TAP PV I+ Q AVPKSM+VKLQ
Sbjct: 598 PVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNTAPLPVKSIVLQAAVPKSMKVKLQ 657
Query: 69 PASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDL 128
P S ++L FSP+ PPA I+Q++LL NP KE +RLRYKLTF G Q +EVGEV FP +
Sbjct: 658 PPSGTELSPFSPIQPPAAITQVMLLANPLKEKVRLRYKLTFALGEQLSTEVGEVDQFPPV 717
Query: 129 AVLG 132
G
Sbjct: 718 EQWG 721
>gi|71773010 adaptor-related protein complex 1, gamma 1 subunit
isoform a [Homo sapiens]
Length = 825
Score = 75.5 bits (184), Expect = 1e-14
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 7 LPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVK 66
+P + Y +NG +I F ++ +P V V+ + ++ + D +FQ AVPK+ +++
Sbjct: 707 IPSITAYSKNGLKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQ 764
Query: 67 LQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFP 126
L SSS +PAF+ I+Q++ + NP K+ +R+R KLT+N G ++ EV +FP
Sbjct: 765 LLSPSSSIVPAFNT----GTITQVIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVNNFP 820
>gi|71772942 adaptor-related protein complex 1, gamma 1 subunit
isoform b [Homo sapiens]
Length = 822
Score = 75.5 bits (184), Expect = 1e-14
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 7 LPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVK 66
+P + Y +NG +I F ++ +P V V+ + ++ + D +FQ AVPK+ +++
Sbjct: 704 IPSITAYSKNGLKIEFTFERSNT--NPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQ 761
Query: 67 LQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFP 126
L SSS +PAF+ I+Q++ + NP K+ +R+R KLT+N G ++ EV +FP
Sbjct: 762 LLSPSSSIVPAFNT----GTITQVIKVLNPQKQQLRMRIKLTYNHKGSAMQDLAEVNNFP 817
>gi|4503843 adaptor-related protein complex 1, gamma 2 subunit [Homo
sapiens]
Length = 785
Score = 64.3 bits (155), Expect = 3e-11
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 7 LPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVK 66
+P L V++R G ++ L F + P +P + ++ +T + + V + Q AVPKS++++
Sbjct: 667 IPDLKVFEREGVQLNLSFIRP--PENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQ 724
Query: 67 LQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFP 126
LQ S + +PA L I+Q+ + NP+K P+RL+ +LT++ Q E+ EV + P
Sbjct: 725 LQAPSGNTVPARGGLP----ITQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLP 780
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 29.6 bits (65), Expect = 0.76
Identities = 18/79 (22%), Positives = 31/79 (39%)
Query: 25 SQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPP 84
S + A +VQ +L + P P W Q+ + + P++S L PP
Sbjct: 275 SSSMAQSKSQVQAMLPVALPPLPVPQWHHAHQLKALAASKQGSATKQQGPTPSWSGLPPP 334
Query: 85 AVISQMLLLDNPHKEPIRL 103
+ + +PH P+ L
Sbjct: 335 GLSPPYRPVPSPHPPPLPL 353
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 29.3 bits (64), Expect = 0.99
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 34 EVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQMLLL 93
E+ LLT M PQP D + + +P +K SS F+ P + LLL
Sbjct: 289 ELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTV--QLLL 346
Query: 94 D 94
D
Sbjct: 347 D 347
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 29.3 bits (64), Expect = 0.99
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 28 GAPGHPEVQ---VLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPP 84
G PG P V+ +LL T + + WD P A +S+ PA SPL P
Sbjct: 11 GRPGAPLVRTGLLLLSTWVLAGAEITWDATGGPGRPA--------APASRPPALSPLSPR 62
Query: 85 AVISQ 89
AV SQ
Sbjct: 63 AVASQ 67
>gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo
sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 1.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 69 PASSSKLPAFSPL----MPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG 120
P S AFSPL PPAV+ L D+ + EP R LT Q G P S G
Sbjct: 276 PGVHSAGTAFSPLGSLRCPPAVVRPGLGTDSENPEPGRKCGVLTAPQTGSPRSVRG 331
>gi|239751056 PREDICTED: hypothetical protein [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 1.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 69 PASSSKLPAFSPL----MPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG 120
P S AFSPL PPAV+ L D+ + EP R LT Q G P S G
Sbjct: 276 PGVHSAGTAFSPLGSLRCPPAVVRPGLGTDSENPEPGRKCGVLTAPQTGSPRSVRG 331
>gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo
sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 1.7
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 69 PASSSKLPAFSPL----MPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVG 120
P S AFSPL PPAV+ L D+ + EP R LT Q G P S G
Sbjct: 276 PGVHSAGTAFSPLGSLRCPPAVVRPGLGTDSENPEPGRKCGVLTAPQTGSPRSVRG 331
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 28.5 bits (62), Expect = 1.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 82 MPPAVI---SQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDLAVLGAA 134
+PPA +++LLD+ EPI LR T ++ G+P S + + P A + A
Sbjct: 451 LPPAAALPQPEVILLDSDLDEPIDLRCVKTRSEAGEPPSSLQVKPETPASAAVAVA 506
>gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo
sapiens]
Length = 596
Score = 27.7 bits (60), Expect = 2.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 20 ILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFS 79
+LL + +PG P++ L + PQP+ +MF V + + V +Q S L +
Sbjct: 440 VLLTSNAAHSPGDPQLPSDLAAHWAF-PQPLVSVMFAVKLDQGSGVAVQKDSGWNLTGSA 498
Query: 80 PLMPPAVISQ 89
P +SQ
Sbjct: 499 PQSGTTTLSQ 508
>gi|40217810 cell cycle progression 2 protein isoform 2 [Homo
sapiens]
Length = 521
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 14 DRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQP 49
D+N F+ LLH + T +PE LL + AP P
Sbjct: 337 DQNTFQKLLHINATALLEYPEYSGPLLPASAVAPGP 372
>gi|13569848 cell cycle progression 2 protein isoform 2 [Homo
sapiens]
Length = 521
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 14 DRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQP 49
D+N F+ LLH + T +PE LL + AP P
Sbjct: 337 DQNTFQKLLHINATALLEYPEYSGPLLPASAVAPGP 372
>gi|40217812 cell cycle progression 2 protein isoform 1 [Homo
sapiens]
Length = 631
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 14 DRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQP 49
D+N F+ LLH + T +PE LL + AP P
Sbjct: 447 DQNTFQKLLHINATALLEYPEYSGPLLPASAVAPGP 482
>gi|90669228 deleted in lung and esophageal cancer 1 isoform DLEC1-S3
[Homo sapiens]
Length = 1778
Score = 26.6 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 87 ISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDL 128
+++ L+L N + PIR R+ L F G P + + + P++
Sbjct: 1112 VTRQLILTN--RSPIRTRFSLKFEYFGSPQNSLSKKTSLPNM 1151
>gi|90669194 deleted in lung and esophageal cancer 1 isoform DLEC1-N1
[Homo sapiens]
Length = 1755
Score = 26.6 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 87 ISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKDFPDL 128
+++ L+L N + PIR R+ L F G P + + + P++
Sbjct: 1112 VTRQLILTN--RSPIRTRFSLKFEYFGSPQNSLSKKTSLPNM 1151
>gi|12383060 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 1 [Homo sapiens]
Length = 504
Score = 26.2 bits (56), Expect = 8.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 37 VLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNP 96
+++ T + IM+++A ++ KLQ + LP +P+ A++ QM LD
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALV-QMEYLDMV 359
Query: 97 HKEPIRL 103
E +RL
Sbjct: 360 VNETLRL 366
>gi|16933535 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 3 [Homo sapiens]
Length = 420
Score = 26.2 bits (56), Expect = 8.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 37 VLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNP 96
+++ T + IM+++A ++ KLQ + LP +P+ A++ QM LD
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALV-QMEYLDMV 359
Query: 97 HKEPIRL 103
E +RL
Sbjct: 360 VNETLRL 366
>gi|16933533 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 2 [Homo sapiens]
Length = 503
Score = 26.2 bits (56), Expect = 8.4
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 37 VLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNP 96
+++ T + IM+++A ++ KLQ + LP +P+ A++ QM LD
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALV-QMEYLDMV 359
Query: 97 HKEPIRL 103
E +RL
Sbjct: 360 VNETLRL 366
>gi|118918395 fibronectin type III domain containing 3A isoform 1
[Homo sapiens]
Length = 1198
Score = 26.2 bits (56), Expect = 8.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 68 QPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFS 117
Q A S L +P +PP L P + I+LR+ GG P S
Sbjct: 646 QSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPIS 695
>gi|118918397 fibronectin type III domain containing 3A isoform 2
[Homo sapiens]
Length = 1142
Score = 26.2 bits (56), Expect = 8.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 68 QPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFS 117
Q A S L +P +PP L P + I+LR+ GG P S
Sbjct: 590 QSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPIS 639
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 26.2 bits (56), Expect = 8.4
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 29 APG-HPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVI 87
APG HP+ Q+L P+ + + +V VP+ +V L+P + P P I
Sbjct: 135 APGLHPQSQLLPSHASIIPPEDLPGVP-KVFVPRPSQVSLKPTEEAHKKERKPQKPGKYI 193
Query: 88 SQMLLLDNPHKEPIRLRYKLTFNQGGQPF 116
Q P +P L+ + + G +P+
Sbjct: 194 CQ--YCSRPCAKPSVLQKHIRSHTGERPY 220
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 26.2 bits (56), Expect = 8.4
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 29 APG-HPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVI 87
APG HP+ Q+L P+ + + +V VP+ +V L+P + P P I
Sbjct: 135 APGLHPQSQLLPSHASIIPPEDLPGVP-KVFVPRPSQVSLKPTEEAHKKERKPQKPGKYI 193
Query: 88 SQMLLLDNPHKEPIRLRYKLTFNQGGQPF 116
Q P +P L+ + + G +P+
Sbjct: 194 CQ--YCSRPCAKPSVLQKHIRSHTGERPY 220
>gi|150456424 RW1 protein [Homo sapiens]
Length = 1883
Score = 26.2 bits (56), Expect = 8.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 54 MFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRL 103
+F V VP R L+P +++P S P ++ + NPH EP+++
Sbjct: 201 VFGVGVPNPYR--LRPFLGARVPVNSSFSP------IINIHNPHSEPLQV 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,869,028
Number of Sequences: 37866
Number of extensions: 265809
Number of successful extensions: 632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 31
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.