Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293916 Sequence: fasta or formatted (134aa) NCBI GI: 239758145
Description:

PREDICTED: similar to ADP-ribosylation factor binding protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7          9           2
 C cysteine            0.0          0           0
 D aspartate           3.7          5           1
 E glutamate           3.0          4           1
 F phenylalanine       5.2          7           1
 G glycine             6.7          9           2
 H histidine           2.2          3           1
 I isoleucine          3.7          5           1
 K lysine              5.2          7           1
 L leucine            12.7         17           3
 M methionine          5.2          7           2
 N asparagine          2.2          3           1
 P proline            11.9         16           2
 Q glutamine           6.0          8           1
 R arginine            3.7          5           1
 S serine              7.5         10           3
 T threonine           3.0          4           1
 V valine              9.0         12           1
 W tryptophan          0.7          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ADP-ribosylation factor bindi... 
GGA2                  0.959   ADP-ribosylation factor binding protein 2 
GGA1                  0.484   golgi associated, gamma adaptin ear containing, ARF b...
GGA1                  0.484   golgi associated, gamma adaptin ear containing, ARF ...
GGA3                  0.472   ADP-ribosylation factor binding protein 3 isoform sh...
GGA3                  0.472   ADP-ribosylation factor binding protein 3 isoform lo...
AP1G1                 0.203   adaptor-related protein complex 1, gamma 1 subunit i...
AP1G1                 0.203   adaptor-related protein complex 1, gamma 1 subunit i...
AP1G2                 0.159   adaptor-related protein complex 1, gamma 2 subunit [H...
MAMLD1                0.020   mastermind-like domain containing 1 
KIAA0368              0.016   KIAA0368 protein 
SORCS3                0.016   VPS10 domain receptor protein SORCS 3 
LOC100291645          0.012   PREDICTED: hypothetical protein XP_002344930 
LOC100289478          0.012   PREDICTED: hypothetical protein 
LOC100289478          0.012   PREDICTED: hypothetical protein XP_002343478 
CBX4                  0.012   chromobox homolog 4 
LOC100290629          0.012   PREDICTED: hypothetical protein XP_002347563 
TBRG4                 0.008   cell cycle progression 2 protein isoform 2 
TBRG4                 0.008   cell cycle progression 2 protein isoform 2 
TBRG4                 0.008   cell cycle progression 2 protein isoform 1 
DLEC1                 0.008   deleted in lung and esophageal cancer 1 isoform DLEC...
DLEC1                 0.008   deleted in lung and esophageal cancer 1 isoform DLEC...
CYP3A43               0.004   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.004   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.004   cytochrome P450, family 3, subfamily A, polypeptide ...
FNDC3A                0.004   fibronectin type III domain containing 3A isoform 1...
FNDC3A                0.004   fibronectin type III domain containing 3A isoform 2...
HIVEP3                0.004   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.004   human immunodeficiency virus type I enhancer bindin...
TMEM131               0.004   RW1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press