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Search of human proteins with 239757142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757142 PREDICTED: hypothetical protein [Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757142 PREDICTED: hypothetical protein [Homo sapiens] 561 e-160
gi|239751665 PREDICTED: hypothetical protein XP_002347963 [Homo ... 397 e-111
gi|239746171 PREDICTED: hypothetical protein XP_002343683 [Homo ... 397 e-111
gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens] 33 0.35
gi|13489095 sialoadhesin precursor [Homo sapiens] 33 0.35
gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens] 32 0.79
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 31 1.0
gi|18104993 protein tyrosine phosphatase, non-receptor type 6 is... 30 1.8
gi|18104989 protein tyrosine phosphatase, non-receptor type 6 is... 30 1.8
gi|18104991 protein tyrosine phosphatase, non-receptor type 6 is... 30 1.8
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 30 1.8
gi|210031233 PR domain containing 6 [Homo sapiens] 29 3.9
gi|62865890 dual specificity phosphatase 5 [Homo sapiens] 29 5.1
gi|194097369 pregnancy specific beta-1-glycoprotein 5 [Homo sapi... 28 6.7
gi|194097367 pregnancy specific beta-1-glycoprotein 5 [Homo sapi... 28 6.7
gi|40548403 decapping enzyme Dcp1b [Homo sapiens] 28 8.7
>gi|239757142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 561 bits (1445), Expect = e-160
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT
Sbjct: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
Query: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE
Sbjct: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
Query: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE
Sbjct: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
Query: 181 GKRHTEQGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLL 240
GKRHTEQGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLL
Sbjct: 181 GKRHTEQGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLL 240
Query: 241 MSALPSRQPPELSSRYLYCSPLCAASPDPLRAGSL 275
MSALPSRQPPELSSRYLYCSPLCAASPDPLRAGSL
Sbjct: 241 MSALPSRQPPELSSRYLYCSPLCAASPDPLRAGSL 275
>gi|239751665 PREDICTED: hypothetical protein XP_002347963 [Homo
sapiens]
Length = 379
Score = 397 bits (1021), Expect = e-111
Identities = 207/244 (84%), Positives = 213/244 (87%), Gaps = 9/244 (3%)
Query: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT
Sbjct: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
Query: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE
Sbjct: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
Query: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE
Sbjct: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
Query: 181 GKRHTEQGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLL 240
GKRHTEQGLP+ R P H + +A ++RL G LRA C P A SG L
Sbjct: 181 GKRHTEQGLPLA---RGPLH--LAGVAPVQRLQ-ASAHGPLRAVDE--CPAVPPA-SGAL 231
Query: 241 MSAL 244
+ L
Sbjct: 232 VQIL 235
>gi|239746171 PREDICTED: hypothetical protein XP_002343683 [Homo
sapiens]
Length = 379
Score = 397 bits (1021), Expect = e-111
Identities = 207/244 (84%), Positives = 213/244 (87%), Gaps = 9/244 (3%)
Query: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT
Sbjct: 1 MSPTQVQGPFGDTHHLEWSSVLLKLGPAGPGKAIWFTFRTCQISEQLEGRMPTVLCQNWT 60
Query: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE
Sbjct: 61 CRLVPRAAANQPEYRLTISKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGE 120
Query: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE
Sbjct: 121 FLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSE 180
Query: 181 GKRHTEQGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLL 240
GKRHTEQGLP+ R P H + +A ++RL G LRA C P A SG L
Sbjct: 181 GKRHTEQGLPLA---RGPLH--LAGVAPVQRLQ-ASAHGPLRAVDE--CPAVPPA-SGAL 231
Query: 241 MSAL 244
+ L
Sbjct: 232 VQIL 235
>gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens]
Length = 3661
Score = 32.7 bits (73), Expect = 0.35
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 203 VLSLAGLRRL-VIVEQEGELRADKRSGCRLRPTAP-SGLLMSALPSRQPPELSSRYLYCS 260
++ +A LR L ++V+ GELR G PTAP G++ PE+ R C+
Sbjct: 1784 MIVMATLRLLRLLVKHAGELRQYLEHGLETTPTAPWRGIIPQLFSRLNHPEVYVRQSICN 1843
Query: 261 PLCAASPD 268
LC + D
Sbjct: 1844 LLCRVAQD 1851
>gi|13489095 sialoadhesin precursor [Homo sapiens]
Length = 1709
Score = 32.7 bits (73), Expect = 0.35
Identities = 48/159 (30%), Positives = 59/159 (37%), Gaps = 25/159 (15%)
Query: 130 VVIDPGV----GVGQLLAWRTRGG----GNARSFQVLVSKPRTH--PVSLTRLTHLRELS 179
VV +PG+ G L+ R GG GN+ +F + R H PV TH+
Sbjct: 1447 VVAEPGLDVPEGAALNLSCRLLGGPGPVGNS-TFAWFWNDRRLHAEPVPTLAFTHVARAQ 1505
Query: 180 EGKRHTEQGLPVGLTLRVPTHGRVLSLAGL-RRLVIVEQEGEL------RADKRSGCRLR 232
G H LP G P RVL +V VE EG L R D L
Sbjct: 1506 AGMYHCLAELPTGAAASAPVMLRVLYPPKTPTMMVFVEPEGGLRGILDCRVDSEPLASLT 1565
Query: 233 PTAPSGLLMSALPSRQPPELSSRYLYCSPLCAASPDPLR 271
S L+ S+ P P E L ASP+ LR
Sbjct: 1566 LHLGSRLVASSQPQGAPAEPHIHVL-------ASPNALR 1597
>gi|13899253 uridine-cytidine kinase 1 isoform a [Homo sapiens]
Length = 277
Score = 31.6 bits (70), Expect = 0.79
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 19/84 (22%)
Query: 99 DAAVPGFLANVVALDHILQ-VGEFLGKDPFQLVVIDPGVGVGQLLAWRTRGGGNARSFQV 157
D +P + N+VA++ I+Q + + L G + W RGG N RS++
Sbjct: 207 DVIIPRGVDNMVAINLIVQHIQDILN---------------GDICKWH-RGGSNGRSYKR 250
Query: 158 LVSKPRTHPVSLT--RLTHLRELS 179
S+P HP LT + +HL S
Sbjct: 251 TFSEPGDHPGMLTSGKRSHLESSS 274
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 195 LRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLLMSALPSRQPPELSS 254
+R H +V L I E L + G +PT+P+G + A P L+
Sbjct: 338 IRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTSPTGPSVCA---SSRPALAK 394
Query: 255 RYLYCSPLCAASPDPLRAG 273
R + LC P+P AG
Sbjct: 395 RPVASKALCEGPPEPQAAG 413
>gi|18104993 protein tyrosine phosphatase, non-receptor type 6
isoform 3 [Homo sapiens]
Length = 624
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 157 VLVSKPRTHPVSLTRLTHLRELSEGKRHTEQGL 189
VL +P+ P S R+TH++ + EG R+T GL
Sbjct: 149 VLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGL 181
>gi|18104989 protein tyrosine phosphatase, non-receptor type 6
isoform 1 [Homo sapiens]
Length = 595
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 157 VLVSKPRTHPVSLTRLTHLRELSEGKRHTEQGL 189
VL +P+ P S R+TH++ + EG R+T GL
Sbjct: 149 VLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGL 181
>gi|18104991 protein tyrosine phosphatase, non-receptor type 6
isoform 2 [Homo sapiens]
Length = 597
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 157 VLVSKPRTHPVSLTRLTHLRELSEGKRHTEQGL 189
VL +P+ P S R+TH++ + EG R+T GL
Sbjct: 151 VLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGL 183
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 30.4 bits (67), Expect = 1.8
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 6/118 (5%)
Query: 134 PGVGVGQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSEGKR-HTEQGLPVG 192
P +G +L GG + S V P + L L ++ EL G G P
Sbjct: 11 PDLGGPRLCPVPAAGGARSPSSPYSVETPYGFHLDLDFLKYIEELERGPAARRAPGPPTS 70
Query: 193 LTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCR-LRPTAPSGLLMSALPSRQP 249
R P G LAG R L +D L APSGLLM L R P
Sbjct: 71 RRPRAPRPG----LAGARSPGAWTSSESLASDDGGAPGILSQGAPSGLLMQPLSPRAP 124
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 29.3 bits (64), Expect = 3.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 83 ELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGEFLGKDPFQLVVIDP 134
EL + L + P C C + VPG + A I Q G ++G PFQ V++ P
Sbjct: 236 ELPEWLRDLPREVCLCTSTVPGLAYGICAAQRI-QQGTWIG--PFQGVLLPP 284
>gi|62865890 dual specificity phosphatase 5 [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 5.1
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 24/123 (19%)
Query: 98 CDAAVPGFLANVVALDHILQVGEFLGKDPFQLV-----VIDPGVG-VGQLLAWRTRGGGN 151
C+A + + + + ++++ +F K+ F + ++ P G +GQLL + +
Sbjct: 263 CEAGISR--SPTICMAYLMKTKQFRLKEAFDYIKQRRSMVSPNFGFMGQLLQYES----- 315
Query: 152 ARSFQVLVSKPRTHPVSL-------TRLTHLRELSEGKRHTEQGLPVGLTLRVPTHGRVL 204
++L S P P S + + HL+ LS + P + VPTH V
Sbjct: 316 ----EILPSTPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPTHSTVS 371
Query: 205 SLA 207
L+
Sbjct: 372 ELS 374
>gi|194097369 pregnancy specific beta-1-glycoprotein 5 [Homo
sapiens]
Length = 335
Score = 28.5 bits (62), Expect = 6.7
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 187 QGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLLMSALPS 246
Q LPV ++ P R+L L + R E E+R D+ G R P + L LPS
Sbjct: 185 QSLPVSPRVKRPIENRILILPSVTRNETGPYECEIR-DRDGGMRSDPVTLNVLYGPDLPS 243
Query: 247 RQPP---ELSSRYLYCSPLCAASP 267
P S LY S ++P
Sbjct: 244 IYPSFTYYRSGENLYLSCFAESNP 267
>gi|194097367 pregnancy specific beta-1-glycoprotein 5 [Homo
sapiens]
Length = 335
Score = 28.5 bits (62), Expect = 6.7
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 187 QGLPVGLTLRVPTHGRVLSLAGLRRLVIVEQEGELRADKRSGCRLRPTAPSGLLMSALPS 246
Q LPV ++ P R+L L + R E E+R D+ G R P + L LPS
Sbjct: 185 QSLPVSPRVKRPIENRILILPSVTRNETGPYECEIR-DRDGGMRSDPVTLNVLYGPDLPS 243
Query: 247 RQPP---ELSSRYLYCSPLCAASP 267
P S LY S ++P
Sbjct: 244 IYPSFTYYRSGENLYLSCFAESNP 267
>gi|40548403 decapping enzyme Dcp1b [Homo sapiens]
Length = 617
Score = 28.1 bits (61), Expect = 8.7
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 27/148 (18%)
Query: 79 SKFAELGKALENSPGLGCECDAAVPGFLANVVALDHILQVGEFLGKDPFQLVVIDPGVGV 138
S+ L + L+++PG +CD + P A+ AL+ + P + + PG G+
Sbjct: 350 SRTQNLFEKLQSTPGAANKCDPSTPA-PASSAALNR--------SRAPTSVTPVAPGKGL 400
Query: 139 GQLLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSEGKRHTEQGLPVGLTLRVP 198
Q G S P P ++ H RE S R T LP+ + +
Sbjct: 401 AQPPQAYFNG-----------SLP---PQTVGHQAHGREQSTLPRQT---LPISGS-QTG 442
Query: 199 THGRVLSLAGLRRLVIVEQEGELRADKR 226
+ G + L++L IV+QE +L A R
Sbjct: 443 SSGVISPQELLKKLQIVQQEQQLHASNR 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,473,871
Number of Sequences: 37866
Number of extensions: 594622
Number of successful extensions: 1293
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 17
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.