Guide to the Human Genome
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Name: LOC100293870 Sequence: fasta or formatted (281aa) NCBI GI: 239757014
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         23           2
 C cysteine            3.6         10           2
 D aspartate           3.2          9           1
 E glutamate           2.8          8           2
 F phenylalanine       1.8          5           2
 G glycine             8.9         25           2
 H histidine           3.6         10           1
 I isoleucine          1.8          5           1
 K lysine              1.4          4           1
 L leucine             9.3         26           3
 M methionine          1.4          4           1
 N asparagine          1.8          5           2
 P proline            10.0         28           3
 Q glutamine           3.2          9           2
 R arginine           15.3         43           7
 S serine             11.0         31           3
 T threonine           3.2          9           1
 V valine              7.1         20           3
 W tryptophan          1.4          4           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289085          0.903   PREDICTED: hypothetical protein XP_002343916 
LOC100288738          0.903   PREDICTED: hypothetical protein XP_002343788 
LOC100130360          0.022   PREDICTED: hypothetical protein 
SNRPN                 0.022   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.022   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.022   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.022   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.022   small nuclear ribonucleoprotein polypeptide N 
LOC729417             0.022   PREDICTED: hypothetical protein 
LOC729417             0.022   PREDICTED: hypothetical protein 
LOC729417             0.022   PREDICTED: hypothetical protein 
APC2                  0.022   adenomatosis polyposis coli 2 
LOC100290879          0.020   PREDICTED: hypothetical protein XP_002347499 
LOC100286940          0.020   PREDICTED: hypothetical protein XP_002343317 
NSUN5C                0.018   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
NSUN5C                0.018   NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho...
NSUN5C                0.018   NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho...
LOC100293644          0.016   PREDICTED: hypothetical protein 
LOC100292508          0.016   PREDICTED: hypothetical protein 
LOC100287563          0.016   PREDICTED: hypothetical protein 
LOC100287563          0.016   PREDICTED: hypothetical protein XP_002343733 
ILDR1                 0.014   immunoglobulin-like domain containing receptor 1 [Ho...
SRRM1                 0.014   serine/arginine repetitive matrix 1 
AHDC1                 0.014   AT hook, DNA binding motif, containing 1 
SRCAP                 0.013   Snf2-related CBP activator protein 
DACT3                 0.013   thymus expressed gene 3-like 
LOC100292793          0.013   PREDICTED: hypothetical protein 
LOC100129630          0.013   PREDICTED: hypothetical protein 
LOC100290071          0.013   PREDICTED: hypothetical protein XP_002347957 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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